Wall clock time and date at job start Wed Apr 1 2020 02:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38236 * 120.00062 * 2 1 4 4 C 1.38232 * 120.00339 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00318 * 180.02562 * 4 3 2 6 6 C 1.38236 * 119.99671 * 0.02562 * 4 3 2 7 7 C 1.38239 * 120.00075 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.99870 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47184 * 90.00135 * 8 7 6 10 10 O 1.21283 * 120.00207 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00080 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99855 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.89068 * 26.83973 * 12 11 9 14 14 C 1.53957 * 113.66038 * 255.49590 * 12 11 9 15 15 C 1.53951 * 87.29223 * 270.26325 * 14 12 11 16 16 H 1.09002 * 113.65739 * 220.79382 * 15 14 12 17 17 N 1.46497 * 113.66258 * 89.82910 * 15 14 12 18 18 C 1.36942 * 119.99716 * 104.50544 * 17 15 14 19 19 H 1.08005 * 120.00281 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99950 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99907 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47061 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47090 * 119.99730 * 22 20 18 25 25 H 1.48495 * 109.47022 * 240.00028 * 22 20 18 26 26 C 1.52907 * 86.78409 * 335.26560 * 15 14 12 27 27 C 1.52904 * 121.13569 * 150.62815 * 26 15 14 28 28 C 1.53949 * 86.78615 * 100.81615 * 27 26 15 29 29 C 1.52910 * 121.13449 * 259.18412 * 26 15 14 30 30 C 1.38232 * 120.00031 * 359.70755 * 7 6 4 31 31 H 1.09002 * 109.47152 * 89.99927 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00027 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00008 * 1 2 3 34 34 H 1.08008 * 119.99603 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47027 * 89.99611 * 5 4 3 36 36 H 1.08997 * 109.46683 * 209.99985 * 5 4 3 37 37 H 1.09000 * 109.46639 * 329.99997 * 5 4 3 38 38 H 1.08004 * 120.00013 * 179.97438 * 6 4 3 39 39 H 1.09002 * 109.47427 * 210.00208 * 8 7 6 40 40 H 1.09006 * 109.47325 * 330.00375 * 8 7 6 41 41 H 0.96992 * 120.00057 * 0.02562 * 11 9 8 42 42 H 1.08998 * 113.57983 * 24.86625 * 14 12 11 43 43 H 1.09000 * 113.57706 * 155.58044 * 14 12 11 44 44 H 0.96995 * 120.00349 * 284.50027 * 17 15 14 45 45 H 0.97003 * 119.99652 * 180.02562 * 21 20 18 46 46 H 1.09007 * 113.65721 * 215.28340 * 27 26 15 47 47 H 1.09002 * 113.66409 * 346.33805 * 27 26 15 48 48 H 1.09008 * 113.57639 * 270.13208 * 28 27 26 49 49 H 1.08993 * 113.58390 * 139.34217 * 28 27 26 50 50 H 1.09002 * 113.66418 * 13.65678 * 29 26 15 51 51 H 1.09000 * 113.66408 * 144.71191 * 29 26 15 52 52 H 1.07998 * 120.00124 * 180.29551 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0000 0.0005 7 6 3.5805 -1.1971 -0.0005 8 6 4.3340 -2.5022 -0.0011 9 6 4.5846 -2.9382 1.4195 10 8 4.1898 -2.2566 2.3417 11 7 5.2467 -4.0862 1.6652 12 6 5.4898 -4.5103 3.0463 13 1 4.7451 -4.1281 3.7445 14 6 6.9413 -4.2952 3.5122 15 6 7.2425 -5.7106 2.9867 16 1 7.8980 -6.2887 3.6381 17 7 7.6635 -5.7397 1.5839 18 6 8.9814 -5.9369 1.2684 19 1 9.7105 -6.0706 2.0539 20 6 9.3804 -5.9639 -0.0608 21 7 8.4919 -5.8005 -1.0181 22 14 11.1783 -6.2323 -0.4911 23 1 11.9681 -6.3874 0.7569 24 1 11.3117 -7.4587 -1.3176 25 1 11.6843 -5.0634 -1.2545 26 6 5.7567 -6.0090 3.1901 27 6 5.0283 -7.0295 2.3149 28 6 5.1785 -8.0141 3.4887 29 6 5.2663 -6.7857 4.4125 30 6 2.1982 -1.1972 0.0045 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6581 2.1325 0.0004 35 1 4.5152 2.8167 1.0289 36 1 5.2866 2.3720 -0.5124 37 1 3.7451 3.2620 -0.5128 38 1 5.3517 0.0000 0.0005 39 1 3.7452 -3.2616 -0.5157 40 1 5.2867 -2.3715 -0.5145 41 1 5.5621 -4.6315 0.9278 42 1 7.4620 -3.5078 2.9674 43 1 7.0425 -4.1994 4.5933 44 1 7.0087 -5.6193 0.8784 45 1 8.7707 -5.8198 -1.9470 46 1 3.9941 -6.7612 2.0986 47 1 5.5868 -7.3207 1.4253 48 1 6.0977 -8.5989 3.4523 49 1 4.2933 -8.6264 3.6603 50 1 6.0151 -6.8822 5.1988 51 1 4.2992 -6.4490 4.7857 52 1 1.6582 -2.1325 0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078717597.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:26 Heat of formation + Delta-G solvation = 29.326183 kcal Electronic energy + Delta-G solvation = -30157.014297 eV Core-core repulsion = 26315.321158 eV Total energy + Delta-G solvation = -3841.693139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.62263 -39.72639 -38.39470 -35.23916 -33.65184 -33.50720 -33.39077 -32.16282 -29.93187 -28.35928 -27.01769 -26.66764 -25.45631 -24.55698 -24.15441 -22.71348 -21.18324 -20.71410 -20.22737 -19.72690 -18.06072 -17.05116 -16.64003 -16.26312 -15.89516 -15.71872 -15.17219 -14.69650 -14.64726 -14.32711 -14.26795 -14.00589 -13.68073 -13.27246 -13.10900 -12.95232 -12.92319 -12.88053 -12.61735 -12.59551 -12.23142 -12.09883 -11.88631 -11.62558 -11.50124 -11.44312 -11.33363 -10.98177 -10.94874 -10.92893 -10.87121 -10.68872 -10.19145 -10.08659 -9.82954 -9.71190 -9.47272 -9.40797 -8.91312 -8.51027 -8.46889 -8.42900 -7.08499 -5.90213 -3.18294 1.41829 1.45746 3.00659 3.36794 3.42895 3.44861 3.46554 3.88763 4.47051 4.70091 4.77026 4.77849 4.79899 4.99456 5.01390 5.16423 5.16870 5.20643 5.28291 5.29829 5.34854 5.36845 5.44858 5.49206 5.56736 5.59935 5.61894 5.66996 5.71708 5.77745 5.83159 5.85015 5.90420 5.99299 6.00188 6.03165 6.15734 6.18956 6.23198 6.30531 6.36566 6.50580 6.58666 6.60998 6.63074 6.70411 6.72076 6.79945 6.96473 7.10330 7.15032 7.63431 7.97182 8.29509 8.63963 9.40536 9.94936 10.29091 11.32558 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003141 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.348106 B = 8913.551299 C =10677.813245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.109 4.109 7 C -0.047 4.047 8 C -0.107 4.107 9 C 0.519 3.481 10 O -0.545 6.545 11 N -0.698 5.698 12 C 0.140 3.860 13 H 0.088 0.912 14 C -0.185 4.185 15 C 0.192 3.808 16 H 0.064 0.936 17 N -0.700 5.700 18 C -0.240 4.240 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.127 4.127 27 C -0.126 4.126 28 C -0.134 4.134 29 C -0.107 4.107 30 C -0.111 4.111 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.407 0.593 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.380 0.620 45 H 0.256 0.744 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.078 0.922 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.623 7.638 3.120 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.084 4.084 5 C -0.169 4.169 6 C -0.127 4.127 7 C -0.048 4.048 8 C -0.147 4.147 9 C 0.305 3.695 10 O -0.423 6.423 11 N -0.350 5.350 12 C 0.034 3.966 13 H 0.106 0.894 14 C -0.227 4.227 15 C 0.079 3.921 16 H 0.082 0.918 17 N -0.339 5.339 18 C -0.371 4.371 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.129 4.129 27 C -0.164 4.164 28 C -0.172 4.172 29 C -0.145 4.145 30 C -0.130 4.130 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.245 0.755 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.215 0.785 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.096 0.904 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.689 8.076 3.725 16.324 hybrid contribution 1.030 -0.339 -0.886 1.400 sum -12.659 7.737 2.839 15.106 Atomic orbital electron populations 1.20758 0.91419 1.02603 1.02021 1.19798 0.95794 0.93076 0.99973 1.20808 0.93463 0.97268 1.02822 1.19818 0.93781 0.95135 0.99676 1.20771 0.99859 0.94027 1.02274 1.20883 0.99709 0.91438 1.00708 1.19266 0.93389 0.93667 0.98469 1.20711 1.02706 0.95922 0.95373 1.20390 0.77466 0.80751 0.90899 1.90675 1.51703 1.53694 1.46204 1.45728 1.56897 1.23702 1.08661 1.21589 0.97418 0.94304 0.83284 0.89432 1.24264 0.96272 1.02232 0.99980 1.20864 0.90231 0.92944 0.88033 0.91844 1.42098 1.06937 1.85194 0.99710 1.19307 0.84713 1.41438 0.91606 0.90883 1.24716 0.97791 1.02516 0.95602 1.69628 1.32465 1.56893 0.99120 0.86099 0.84606 0.77340 0.78015 1.20545 1.21841 1.21854 1.23501 0.99202 0.92305 0.97934 1.22575 0.99644 0.96074 0.98104 1.22750 1.01536 0.96041 0.96839 1.22515 1.00687 0.95794 0.95503 1.20809 0.93389 0.97467 1.01286 0.91387 0.91780 0.91641 0.86524 0.91263 0.91523 0.91800 0.86200 0.88015 0.87423 0.75546 0.91028 0.90657 0.78456 0.93424 0.90968 0.90207 0.90082 0.92202 0.91379 0.90351 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 2 C -0.09 -1.06 5.88 -104.62 -0.62 -1.67 16 3 C -0.13 -1.51 9.36 -39.58 -0.37 -1.88 16 4 C -0.08 -1.07 5.88 -104.62 -0.62 -1.69 16 5 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 6 C -0.11 -1.56 9.36 -39.58 -0.37 -1.93 16 7 C -0.05 -0.69 4.37 -104.62 -0.46 -1.14 16 8 C -0.11 -1.53 5.83 -29.04 -0.17 -1.70 16 9 C 0.52 8.90 7.82 -10.99 -0.09 8.81 16 10 O -0.55 -10.96 15.67 5.56 0.09 -10.87 16 11 N -0.70 -11.89 4.93 -53.37 -0.26 -12.16 16 12 C 0.14 2.37 4.08 -67.48 -0.28 2.09 16 13 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 14 C -0.19 -3.34 7.68 -25.75 -0.20 -3.54 16 15 C 0.19 3.64 4.35 -67.48 -0.29 3.35 16 16 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 17 N -0.70 -16.02 4.77 -52.99 -0.25 -16.27 16 18 C -0.24 -6.25 9.98 -15.06 -0.15 -6.40 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.01 13.06 55.49 0.72 -25.29 16 22 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C -0.13 -2.01 0.77 -154.72 -0.12 -2.13 16 27 C -0.13 -1.93 7.18 -26.29 -0.19 -2.12 16 28 C -0.13 -1.81 8.08 -25.75 -0.21 -2.02 16 29 C -0.11 -1.42 7.84 -26.28 -0.21 -1.62 16 30 C -0.11 -1.50 9.36 -39.58 -0.37 -1.87 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 40 H 0.11 1.50 8.09 -51.93 -0.42 1.08 16 41 H 0.41 7.18 6.20 -40.82 -0.25 6.93 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.38 8.89 5.13 -40.82 -0.21 8.69 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.42 7.51 -51.93 -0.39 1.03 16 48 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 52 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 419.24 15.07 6.32 6.32 Total: -1.00 -30.18 419.24 -11.28 -41.46 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -8.80 Total: 17.56 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -4.07 Total: -17.24 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.21 Total: -53.72 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -30.18 -11.28 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717597.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.785 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds