Wall clock time and date at job start Wed Apr 1 2020 02:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38236 * 120.00062 * 2 1 4 4 C 1.38232 * 120.00339 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00318 * 180.02562 * 4 3 2 6 6 C 1.38236 * 119.99671 * 0.02562 * 4 3 2 7 7 C 1.38239 * 120.00075 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.99870 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47184 * 90.00135 * 8 7 6 10 10 O 1.21283 * 120.00207 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00080 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99855 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.89068 * 26.83973 * 12 11 9 14 14 C 1.53957 * 113.66038 * 255.49590 * 12 11 9 15 15 C 1.53951 * 87.29223 * 270.26325 * 14 12 11 16 16 H 1.09002 * 113.65739 * 220.79382 * 15 14 12 17 17 N 1.46497 * 113.66258 * 89.82910 * 15 14 12 18 18 C 1.36942 * 119.99716 * 104.50544 * 17 15 14 19 19 H 1.08005 * 120.00281 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99950 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99907 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47061 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47090 * 119.99730 * 22 20 18 25 25 H 1.48495 * 109.47022 * 240.00028 * 22 20 18 26 26 C 1.52907 * 86.78409 * 335.26560 * 15 14 12 27 27 C 1.52904 * 121.13569 * 150.62815 * 26 15 14 28 28 C 1.53949 * 86.78615 * 100.81615 * 27 26 15 29 29 C 1.52910 * 121.13449 * 259.18412 * 26 15 14 30 30 C 1.38232 * 120.00031 * 359.70755 * 7 6 4 31 31 H 1.09002 * 109.47152 * 89.99927 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00027 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00008 * 1 2 3 34 34 H 1.08008 * 119.99603 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47027 * 89.99611 * 5 4 3 36 36 H 1.08997 * 109.46683 * 209.99985 * 5 4 3 37 37 H 1.09000 * 109.46639 * 329.99997 * 5 4 3 38 38 H 1.08004 * 120.00013 * 179.97438 * 6 4 3 39 39 H 1.09002 * 109.47427 * 210.00208 * 8 7 6 40 40 H 1.09006 * 109.47325 * 330.00375 * 8 7 6 41 41 H 0.96992 * 120.00057 * 0.02562 * 11 9 8 42 42 H 1.08998 * 113.57983 * 24.86625 * 14 12 11 43 43 H 1.09000 * 113.57706 * 155.58044 * 14 12 11 44 44 H 0.96995 * 120.00349 * 284.50027 * 17 15 14 45 45 H 0.97003 * 119.99652 * 180.02562 * 21 20 18 46 46 H 1.09007 * 113.65721 * 215.28340 * 27 26 15 47 47 H 1.09002 * 113.66409 * 346.33805 * 27 26 15 48 48 H 1.09008 * 113.57639 * 270.13208 * 28 27 26 49 49 H 1.08993 * 113.58390 * 139.34217 * 28 27 26 50 50 H 1.09002 * 113.66418 * 13.65678 * 29 26 15 51 51 H 1.09000 * 113.66408 * 144.71191 * 29 26 15 52 52 H 1.07998 * 120.00124 * 180.29551 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0000 0.0005 7 6 3.5805 -1.1971 -0.0005 8 6 4.3340 -2.5022 -0.0011 9 6 4.5846 -2.9382 1.4195 10 8 4.1898 -2.2566 2.3417 11 7 5.2467 -4.0862 1.6652 12 6 5.4898 -4.5103 3.0463 13 1 4.7451 -4.1281 3.7445 14 6 6.9413 -4.2952 3.5122 15 6 7.2425 -5.7106 2.9867 16 1 7.8980 -6.2887 3.6381 17 7 7.6635 -5.7397 1.5839 18 6 8.9814 -5.9369 1.2684 19 1 9.7105 -6.0706 2.0539 20 6 9.3804 -5.9639 -0.0608 21 7 8.4919 -5.8005 -1.0181 22 14 11.1783 -6.2323 -0.4911 23 1 11.9681 -6.3874 0.7569 24 1 11.3117 -7.4587 -1.3176 25 1 11.6843 -5.0634 -1.2545 26 6 5.7567 -6.0090 3.1901 27 6 5.0283 -7.0295 2.3149 28 6 5.1785 -8.0141 3.4887 29 6 5.2663 -6.7857 4.4125 30 6 2.1982 -1.1972 0.0045 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6581 2.1325 0.0004 35 1 4.5152 2.8167 1.0289 36 1 5.2866 2.3720 -0.5124 37 1 3.7451 3.2620 -0.5128 38 1 5.3517 0.0000 0.0005 39 1 3.7452 -3.2616 -0.5157 40 1 5.2867 -2.3715 -0.5145 41 1 5.5621 -4.6315 0.9278 42 1 7.4620 -3.5078 2.9674 43 1 7.0425 -4.1994 4.5933 44 1 7.0087 -5.6193 0.8784 45 1 8.7707 -5.8198 -1.9470 46 1 3.9941 -6.7612 2.0986 47 1 5.5868 -7.3207 1.4253 48 1 6.0977 -8.5989 3.4523 49 1 4.2933 -8.6264 3.6603 50 1 6.0151 -6.8822 5.1988 51 1 4.2992 -6.4490 4.7857 52 1 1.6582 -2.1325 0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078717597.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:25 Heat of formation + Delta-G solvation = 14.823345 kcal Electronic energy + Delta-G solvation = -30157.643187 eV Core-core repulsion = 26315.321158 eV Total energy + Delta-G solvation = -3842.322029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.98859 -40.81113 -39.65772 -36.64754 -35.38467 -34.49736 -34.37886 -33.69638 -31.74419 -29.40636 -27.93188 -27.56391 -26.78219 -26.20587 -25.47088 -24.26548 -22.45035 -21.62660 -21.46181 -21.05547 -19.65578 -18.72728 -18.01519 -17.30712 -17.05153 -16.86211 -16.69015 -16.22676 -16.02894 -15.72956 -15.47334 -15.11438 -14.89225 -14.77215 -14.44906 -13.99380 -13.93960 -13.86974 -13.82705 -13.47165 -13.33373 -13.29453 -13.17609 -13.10245 -12.84872 -12.69630 -12.55710 -12.54357 -12.36254 -12.12841 -11.94412 -11.90759 -11.86277 -11.82941 -11.29066 -11.18369 -10.92581 -10.81424 -10.64495 -9.84843 -9.51572 -9.43213 -8.99000 -7.95532 -5.22091 0.41101 0.47097 1.47175 1.49021 1.57236 1.62661 2.17855 2.55320 2.84013 3.37320 3.41506 3.64955 3.68479 3.78925 3.84461 3.92575 3.94622 4.00282 4.03429 4.20179 4.22116 4.28408 4.32864 4.43535 4.51995 4.58099 4.60555 4.66271 4.69763 4.70246 4.79296 4.81730 4.85784 4.87589 4.91764 4.98941 4.99918 5.06530 5.12317 5.13698 5.21309 5.25998 5.26839 5.36294 5.53121 5.59532 5.62086 5.62508 5.64098 5.72354 5.72521 6.15126 6.28148 6.56902 7.24148 7.35479 8.07924 8.32858 9.27311 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003141 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.348106 B = 8913.551299 C =10677.813245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.131 4.131 4 C -0.092 4.092 5 C -0.111 4.111 6 C -0.137 4.137 7 C -0.065 4.065 8 C -0.102 4.102 9 C 0.518 3.482 10 O -0.575 6.575 11 N -0.697 5.697 12 C 0.140 3.860 13 H 0.089 0.911 14 C -0.180 4.180 15 C 0.178 3.822 16 H 0.061 0.939 17 N -0.708 5.708 18 C -0.240 4.240 19 H 0.073 0.927 20 C -0.065 4.065 21 N -0.960 5.960 22 Si 0.966 3.034 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.297 1.297 26 C -0.117 4.117 27 C -0.127 4.127 28 C -0.127 4.127 29 C -0.094 4.094 30 C -0.129 4.129 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.143 0.857 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.404 0.596 42 H 0.040 0.960 43 H 0.099 0.901 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.085 0.915 47 H 0.049 0.951 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.099 0.901 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 7.834 4.163 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.092 4.092 5 C -0.168 4.168 6 C -0.155 4.155 7 C -0.065 4.065 8 C -0.141 4.141 9 C 0.306 3.694 10 O -0.455 6.455 11 N -0.348 5.348 12 C 0.034 3.966 13 H 0.107 0.893 14 C -0.222 4.222 15 C 0.068 3.932 16 H 0.079 0.921 17 N -0.347 5.347 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.258 4.258 21 N -0.610 5.610 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.221 1.221 25 H -0.224 1.224 26 C -0.120 4.120 27 C -0.165 4.165 28 C -0.164 4.164 29 C -0.132 4.132 30 C -0.147 4.147 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.241 0.759 42 H 0.058 0.942 43 H 0.117 0.883 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.104 0.896 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.103 0.897 50 H 0.098 0.902 51 H 0.117 0.883 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.274 8.263 4.809 18.020 hybrid contribution 1.505 -0.364 -1.155 1.932 sum -13.769 7.899 3.654 16.289 Atomic orbital electron populations 1.20810 0.89075 1.03462 1.03212 1.20228 0.97608 0.92673 0.98564 1.21174 0.93302 0.98404 1.02036 1.20181 0.94583 0.95616 0.98836 1.20813 0.99979 0.93198 1.02773 1.21028 0.99631 0.92431 1.02397 1.19374 0.94108 0.93526 0.99500 1.20702 1.03025 0.96827 0.93563 1.20843 0.76640 0.80170 0.91736 1.90646 1.53045 1.54472 1.47376 1.45791 1.56621 1.23681 1.08715 1.21616 0.96520 0.95220 0.83210 0.89267 1.24207 0.96746 1.00200 1.01001 1.21038 0.92430 0.93720 0.86026 0.92069 1.42161 1.05901 1.85320 1.01349 1.19595 0.86118 1.39851 0.91624 0.90953 1.25377 1.01066 1.03567 0.95772 1.69748 1.33771 1.58504 0.98986 0.85190 0.80923 0.76590 0.77720 1.19566 1.22110 1.22436 1.23379 0.96443 0.91834 1.00300 1.22577 0.99741 0.96653 0.97488 1.22708 1.02195 0.96065 0.95453 1.22550 1.01841 0.94300 0.94546 1.21035 0.93106 0.98639 1.01873 0.89910 0.90376 0.91351 0.83914 0.90940 0.91460 0.89714 0.87002 0.85948 0.87749 0.75927 0.94157 0.88302 0.78986 0.93959 0.89643 0.93200 0.91092 0.89744 0.90238 0.88291 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.01 71.24 0.71 -1.02 16 2 C -0.09 -2.10 5.88 -19.86 -0.12 -2.21 16 3 C -0.13 -2.96 9.36 22.27 0.21 -2.75 16 4 C -0.09 -2.31 5.88 -19.87 -0.12 -2.42 16 5 C -0.11 -2.09 10.01 71.24 0.71 -1.38 16 6 C -0.14 -4.03 9.36 22.27 0.21 -3.82 16 7 C -0.06 -1.91 4.37 -19.87 -0.09 -2.00 16 8 C -0.10 -2.98 5.83 29.10 0.17 -2.81 16 9 C 0.52 18.17 7.82 87.66 0.69 18.86 16 10 O -0.58 -23.50 15.67 -3.04 -0.05 -23.55 16 11 N -0.70 -24.19 4.93 -441.14 -2.17 -26.36 16 12 C 0.14 4.68 4.08 45.28 0.18 4.87 16 13 H 0.09 3.00 7.54 -2.39 -0.02 2.99 16 14 C -0.18 -6.47 7.68 31.23 0.24 -6.23 16 15 C 0.18 6.77 4.35 45.28 0.20 6.97 16 16 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 17 N -0.71 -33.09 4.77 -321.56 -1.53 -34.62 16 18 C -0.24 -12.70 9.98 84.03 0.84 -11.86 16 19 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 20 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 21 N -0.96 -54.77 13.06 21.65 0.28 -54.49 16 22 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 26 C -0.12 -3.59 0.77 -52.32 -0.04 -3.63 16 27 C -0.13 -3.75 7.18 30.88 0.22 -3.53 16 28 C -0.13 -3.12 8.08 31.23 0.25 -2.87 16 29 C -0.09 -2.23 7.84 30.89 0.24 -1.98 16 30 C -0.13 -3.42 9.36 22.27 0.21 -3.21 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.02 8.09 -2.39 -0.02 1.01 16 33 H 0.07 1.05 8.08 -2.38 -0.02 1.03 16 34 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 37 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 38 H 0.11 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.12 2.99 8.09 -2.39 -0.02 2.97 16 40 H 0.10 3.09 8.09 -2.38 -0.02 3.07 16 41 H 0.40 14.70 6.20 -92.71 -0.57 14.12 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.38 18.12 5.13 -92.71 -0.48 17.65 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 47 H 0.05 1.79 7.51 -2.39 -0.02 1.77 16 48 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 49 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -65.81 419.24 3.61 -62.20 By element: Atomic # 1 Polarization: 54.19 SS G_CDS: -0.14 Total: 54.05 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 5.19 Total: -24.09 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -3.42 Total: -115.47 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.81 3.61 -62.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717597.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.028 kcal (2) G-P(sol) polarization free energy of solvation -65.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds