Wall clock time and date at job start Wed Apr 1 2020 02:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38226 * 119.99753 * 2 1 4 4 C 1.38244 * 119.99754 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99901 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99579 * 0.02562 * 4 3 2 7 7 C 1.38231 * 120.00440 * 359.95389 * 6 4 3 8 8 C 1.50698 * 120.00057 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47492 * 89.99877 * 8 7 6 10 10 O 1.21287 * 119.99714 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00239 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00356 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.94396 * 23.59819 * 12 11 9 14 14 C 1.53954 * 113.66582 * 252.19513 * 12 11 9 15 15 C 1.53955 * 87.29005 * 270.26254 * 14 12 11 16 16 H 1.08999 * 113.66562 * 89.73867 * 15 14 12 17 17 N 1.46505 * 113.74335 * 220.78336 * 15 14 12 18 18 C 1.36939 * 119.99755 * 252.22955 * 17 15 14 19 19 H 1.08003 * 119.99905 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00006 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99884 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00067 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47071 * 60.00139 * 22 20 18 24 24 H 1.48501 * 109.47207 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47262 * 300.00395 * 22 20 18 26 26 C 1.52906 * 113.66234 * 155.00127 * 12 11 9 27 27 C 1.52906 * 121.14442 * 323.85524 * 26 12 11 28 28 C 1.53952 * 86.88366 * 209.42220 * 27 26 12 29 29 C 1.53102 * 121.20422 * 215.33098 * 26 12 11 30 30 C 1.38236 * 119.99540 * 180.20765 * 2 1 3 31 31 H 1.09000 * 109.46761 * 90.00251 * 1 2 3 32 32 H 1.08995 * 109.47356 * 210.00011 * 1 2 3 33 33 H 1.09002 * 109.46979 * 329.99893 * 1 2 3 34 34 H 1.08003 * 120.00642 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.46581 * 270.02033 * 5 4 3 36 36 H 1.08997 * 109.46894 * 30.01690 * 5 4 3 37 37 H 1.08994 * 109.46825 * 150.02652 * 5 4 3 38 38 H 1.08003 * 119.99342 * 179.97438 * 6 4 3 39 39 H 1.09001 * 109.47029 * 329.99803 * 8 7 6 40 40 H 1.09001 * 109.46836 * 209.99975 * 8 7 6 41 41 H 0.97008 * 120.00070 * 0.02562 * 11 9 8 42 42 H 1.08994 * 113.57830 * 155.65907 * 14 12 11 43 43 H 1.08999 * 113.58081 * 24.86049 * 14 12 11 44 44 H 0.96997 * 120.00321 * 72.22777 * 17 15 14 45 45 H 0.97008 * 120.00011 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.66421 * 94.90439 * 27 26 12 47 47 H 1.08998 * 113.66230 * 323.94207 * 27 26 12 48 48 H 1.09007 * 113.57685 * 139.28894 * 28 27 26 49 49 H 1.08994 * 113.58377 * 270.08447 * 28 27 26 50 50 H 1.08998 * 113.57982 * 36.05296 * 29 26 12 51 51 H 1.08999 * 113.80409 * 265.03356 * 29 26 12 52 52 H 1.07994 * 120.00398 * 0.05104 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3341 2.5023 0.0011 6 6 4.2717 -0.0001 0.0005 7 6 3.5805 -1.1972 0.0010 8 6 4.3340 -2.5023 0.0015 9 6 4.5851 -2.9368 1.4225 10 8 4.1906 -2.2541 2.3441 11 7 5.2472 -4.0845 1.6693 12 6 5.4918 -4.5067 3.0506 13 1 4.7816 -4.0784 3.7579 14 6 6.9610 -4.3663 3.4887 15 6 7.1752 -5.8015 2.9743 16 1 7.4664 -5.8513 1.9251 17 7 8.0282 -6.6178 3.8417 18 6 9.2998 -6.9376 3.4467 19 1 9.6740 -6.5876 2.4960 20 6 10.1081 -7.7106 4.2687 21 7 9.6526 -8.1358 5.4281 22 14 11.8425 -8.1474 3.7296 23 1 12.6255 -6.9024 3.5247 24 1 12.4929 -8.9750 4.7772 25 1 11.7877 -8.9126 2.4581 26 6 5.6792 -6.0161 3.2069 27 6 4.8806 -7.0044 2.3564 28 6 4.9958 -7.9848 3.5378 29 6 5.1686 -6.7546 4.4471 30 6 2.1982 -1.1972 -0.0043 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6582 2.1325 0.0004 35 1 4.5158 2.8172 -1.0264 36 1 3.7449 3.2616 0.5151 37 1 5.2865 2.3717 0.5149 38 1 5.3517 0.0000 0.0005 39 1 5.2865 -2.3722 -0.5123 40 1 3.7449 -3.2621 -0.5120 41 1 5.5624 -4.6307 0.9321 42 1 7.0869 -4.2661 4.5667 43 1 7.5140 -3.6143 2.9258 44 1 7.6923 -6.9318 4.6958 45 1 10.2174 -8.6764 6.0024 46 1 5.4063 -7.3352 1.4606 47 1 3.8594 -6.6817 2.1537 48 1 4.0805 -8.5445 3.7308 49 1 5.8798 -8.6208 3.4921 50 1 4.2285 -6.3603 4.8330 51 1 5.9232 -6.8862 5.2225 52 1 1.6582 -2.1324 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078717598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:30 Heat of formation + Delta-G solvation = 27.268257 kcal Electronic energy + Delta-G solvation = -29491.205318 eV Core-core repulsion = 25649.422941 eV Total energy + Delta-G solvation = -3841.782377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.65650 -39.89344 -38.62219 -35.00760 -34.02450 -33.68150 -33.64115 -32.21429 -29.96552 -28.49998 -27.18298 -26.85649 -25.44205 -24.62696 -24.10799 -22.46131 -21.48356 -20.90096 -20.34679 -19.87870 -17.94646 -17.26609 -16.79758 -16.46466 -16.11692 -15.86176 -15.17901 -14.80548 -14.72647 -14.57109 -14.29539 -14.04298 -13.73495 -13.43336 -13.37643 -13.12489 -13.11958 -12.76548 -12.74729 -12.50884 -12.35673 -12.00831 -11.90286 -11.74933 -11.68612 -11.60814 -11.34585 -11.16757 -11.13064 -10.88335 -10.82325 -10.59046 -10.21108 -10.13149 -9.86101 -9.80518 -9.60085 -9.38333 -8.85606 -8.72124 -8.66220 -8.63883 -6.98344 -5.81031 -3.09567 1.21036 1.26319 2.72442 3.20122 3.40916 3.45867 3.46613 3.67981 4.44409 4.55494 4.57299 4.61572 4.80243 4.90303 4.97427 5.03731 5.06084 5.09784 5.12180 5.15298 5.27094 5.29158 5.33592 5.33910 5.39635 5.41250 5.42785 5.45366 5.63844 5.66259 5.70016 5.85568 5.96117 5.99248 6.01296 6.04114 6.06617 6.12156 6.20662 6.30973 6.39917 6.40384 6.42896 6.50262 6.52264 6.57914 6.66988 6.89274 6.90208 6.94678 7.07555 7.65338 7.66779 8.35641 8.37746 9.49161 10.06729 10.41505 11.41081 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002231 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.608065 B =12548.411871 C =13630.798859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.104 4.104 9 C 0.514 3.486 10 O -0.535 6.535 11 N -0.705 5.705 12 C 0.130 3.870 13 H 0.094 0.906 14 C -0.175 4.175 15 C 0.192 3.808 16 H 0.075 0.925 17 N -0.708 5.708 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.131 4.131 29 C -0.110 4.110 30 C -0.111 4.111 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.400 0.600 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.073 0.927 51 H 0.078 0.922 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.914 14.212 -13.573 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.054 4.054 8 C -0.144 4.144 9 C 0.300 3.700 10 O -0.411 6.411 11 N -0.355 5.355 12 C 0.024 3.976 13 H 0.112 0.888 14 C -0.217 4.217 15 C 0.080 3.920 16 H 0.093 0.907 17 N -0.346 5.346 18 C -0.375 4.375 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.124 4.124 27 C -0.162 4.162 28 C -0.169 4.169 29 C -0.148 4.148 30 C -0.129 4.129 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.234 0.766 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.108 0.892 50 H 0.091 0.909 51 H 0.097 0.903 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.995 14.636 -12.952 25.900 hybrid contribution 1.130 -0.646 -0.242 1.324 sum -15.865 13.991 -13.194 24.930 Atomic orbital electron populations 1.20774 0.91295 1.02790 1.02095 1.19822 0.95911 0.93047 0.99618 1.20854 0.93496 0.97393 1.02403 1.19838 0.93804 0.95184 0.99485 1.20780 1.00042 0.94070 1.02130 1.20836 0.99551 0.91449 1.00973 1.19223 0.93460 0.93545 0.99215 1.20696 1.02288 0.96200 0.95233 1.20438 0.77720 0.80872 0.90969 1.90723 1.50736 1.53403 1.46209 1.45617 1.57626 1.23564 1.08648 1.21691 0.98154 0.95043 0.82680 0.88801 1.24267 0.94322 1.01275 1.01830 1.21276 0.86659 0.89385 0.94722 0.90695 1.42394 1.12139 1.59528 1.20572 1.19224 0.89830 1.26374 1.02104 0.91272 1.24743 0.98542 1.00704 0.96750 1.69644 1.36677 1.40619 1.10939 0.86284 0.84638 0.77971 0.77366 1.21280 1.21705 1.21287 1.23613 0.98856 0.91526 0.98384 1.22626 0.99146 0.97088 0.97384 1.22739 1.01694 0.96289 0.96138 1.22479 1.00381 0.95715 0.96206 1.20808 0.93340 0.97536 1.01217 0.91317 0.91547 0.91648 0.86385 0.91290 0.91640 0.91465 0.86294 0.87924 0.88011 0.76625 0.89702 0.92374 0.77699 0.93393 0.91783 0.91046 0.92532 0.89189 0.90862 0.90313 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.08 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.24 9.36 -39.58 -0.37 -1.61 16 4 C -0.08 -0.87 5.88 -104.62 -0.62 -1.48 16 5 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 6 C -0.11 -1.24 9.36 -39.59 -0.37 -1.61 16 7 C -0.05 -0.61 4.37 -104.63 -0.46 -1.07 16 8 C -0.10 -1.00 5.83 -29.04 -0.17 -1.17 16 9 C 0.51 6.86 7.82 -10.99 -0.09 6.77 16 10 O -0.53 -9.44 15.63 5.55 0.09 -9.36 16 11 N -0.70 -8.92 5.05 -53.37 -0.27 -9.19 16 12 C 0.13 2.00 4.13 -67.48 -0.28 1.72 16 13 H 0.09 1.58 7.46 -51.93 -0.39 1.20 16 14 C -0.17 -3.10 7.69 -25.74 -0.20 -3.30 16 15 C 0.19 3.61 4.27 -67.47 -0.29 3.33 16 16 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 17 N -0.71 -16.89 5.33 -52.98 -0.28 -17.17 16 18 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 19 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.12 -1.90 0.93 -154.61 -0.14 -2.05 16 27 C -0.12 -1.73 7.48 -26.28 -0.20 -1.93 16 28 C -0.13 -2.01 8.09 -25.74 -0.21 -2.22 16 29 C -0.11 -1.76 7.47 -26.18 -0.20 -1.96 16 30 C -0.11 -1.21 9.36 -39.58 -0.37 -1.58 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 38 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.10 0.78 8.09 -51.93 -0.42 0.37 16 40 H 0.10 0.73 8.08 -51.93 -0.42 0.32 16 41 H 0.40 4.16 8.62 -40.82 -0.35 3.81 16 42 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.39 9.82 5.93 -40.82 -0.24 9.58 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 49 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 50 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 51 H 0.08 1.45 6.43 -51.93 -0.33 1.12 16 52 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 421.99 15.07 6.36 6.36 Total: -1.00 -32.18 421.99 -11.37 -43.55 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -8.87 Total: 13.29 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -4.09 Total: -17.74 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.17 Total: -53.05 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.18 -11.37 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.818 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds