Wall clock time and date at job start Wed Apr 1 2020 02:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38226 * 119.99753 * 2 1 4 4 C 1.38244 * 119.99754 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99901 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99579 * 0.02562 * 4 3 2 7 7 C 1.38231 * 120.00440 * 359.95389 * 6 4 3 8 8 C 1.50698 * 120.00057 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47492 * 89.99877 * 8 7 6 10 10 O 1.21287 * 119.99714 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00239 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00356 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.94396 * 23.59819 * 12 11 9 14 14 C 1.53954 * 113.66582 * 252.19513 * 12 11 9 15 15 C 1.53955 * 87.29005 * 270.26254 * 14 12 11 16 16 H 1.08999 * 113.66562 * 89.73867 * 15 14 12 17 17 N 1.46505 * 113.74335 * 220.78336 * 15 14 12 18 18 C 1.36939 * 119.99755 * 252.22955 * 17 15 14 19 19 H 1.08003 * 119.99905 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00006 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99884 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00067 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47071 * 60.00139 * 22 20 18 24 24 H 1.48501 * 109.47207 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47262 * 300.00395 * 22 20 18 26 26 C 1.52906 * 113.66234 * 155.00127 * 12 11 9 27 27 C 1.52906 * 121.14442 * 323.85524 * 26 12 11 28 28 C 1.53952 * 86.88366 * 209.42220 * 27 26 12 29 29 C 1.53102 * 121.20422 * 215.33098 * 26 12 11 30 30 C 1.38236 * 119.99540 * 180.20765 * 2 1 3 31 31 H 1.09000 * 109.46761 * 90.00251 * 1 2 3 32 32 H 1.08995 * 109.47356 * 210.00011 * 1 2 3 33 33 H 1.09002 * 109.46979 * 329.99893 * 1 2 3 34 34 H 1.08003 * 120.00642 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.46581 * 270.02033 * 5 4 3 36 36 H 1.08997 * 109.46894 * 30.01690 * 5 4 3 37 37 H 1.08994 * 109.46825 * 150.02652 * 5 4 3 38 38 H 1.08003 * 119.99342 * 179.97438 * 6 4 3 39 39 H 1.09001 * 109.47029 * 329.99803 * 8 7 6 40 40 H 1.09001 * 109.46836 * 209.99975 * 8 7 6 41 41 H 0.97008 * 120.00070 * 0.02562 * 11 9 8 42 42 H 1.08994 * 113.57830 * 155.65907 * 14 12 11 43 43 H 1.08999 * 113.58081 * 24.86049 * 14 12 11 44 44 H 0.96997 * 120.00321 * 72.22777 * 17 15 14 45 45 H 0.97008 * 120.00011 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.66421 * 94.90439 * 27 26 12 47 47 H 1.08998 * 113.66230 * 323.94207 * 27 26 12 48 48 H 1.09007 * 113.57685 * 139.28894 * 28 27 26 49 49 H 1.08994 * 113.58377 * 270.08447 * 28 27 26 50 50 H 1.08998 * 113.57982 * 36.05296 * 29 26 12 51 51 H 1.08999 * 113.80409 * 265.03356 * 29 26 12 52 52 H 1.07994 * 120.00398 * 0.05104 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3341 2.5023 0.0011 6 6 4.2717 -0.0001 0.0005 7 6 3.5805 -1.1972 0.0010 8 6 4.3340 -2.5023 0.0015 9 6 4.5851 -2.9368 1.4225 10 8 4.1906 -2.2541 2.3441 11 7 5.2472 -4.0845 1.6693 12 6 5.4918 -4.5067 3.0506 13 1 4.7816 -4.0784 3.7579 14 6 6.9610 -4.3663 3.4887 15 6 7.1752 -5.8015 2.9743 16 1 7.4664 -5.8513 1.9251 17 7 8.0282 -6.6178 3.8417 18 6 9.2998 -6.9376 3.4467 19 1 9.6740 -6.5876 2.4960 20 6 10.1081 -7.7106 4.2687 21 7 9.6526 -8.1358 5.4281 22 14 11.8425 -8.1474 3.7296 23 1 12.6255 -6.9024 3.5247 24 1 12.4929 -8.9750 4.7772 25 1 11.7877 -8.9126 2.4581 26 6 5.6792 -6.0161 3.2069 27 6 4.8806 -7.0044 2.3564 28 6 4.9958 -7.9848 3.5378 29 6 5.1686 -6.7546 4.4471 30 6 2.1982 -1.1972 -0.0043 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6582 2.1325 0.0004 35 1 4.5158 2.8172 -1.0264 36 1 3.7449 3.2616 0.5151 37 1 5.2865 2.3717 0.5149 38 1 5.3517 0.0000 0.0005 39 1 5.2865 -2.3722 -0.5123 40 1 3.7449 -3.2621 -0.5120 41 1 5.5624 -4.6307 0.9321 42 1 7.0869 -4.2661 4.5667 43 1 7.5140 -3.6143 2.9258 44 1 7.6923 -6.9318 4.6958 45 1 10.2174 -8.6764 6.0024 46 1 5.4063 -7.3352 1.4606 47 1 3.8594 -6.6817 2.1537 48 1 4.0805 -8.5445 3.7308 49 1 5.8798 -8.6208 3.4921 50 1 4.2285 -6.3603 4.8330 51 1 5.9232 -6.8862 5.2225 52 1 1.6582 -2.1324 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078717598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:29 Heat of formation + Delta-G solvation = 10.052247 kcal Electronic energy + Delta-G solvation = -29491.951861 eV Core-core repulsion = 25649.422941 eV Total energy + Delta-G solvation = -3842.528919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.92294 -40.78625 -39.66064 -36.35068 -35.74075 -34.46849 -34.35428 -33.69810 -31.74553 -29.31659 -27.90639 -27.54011 -26.69047 -26.41885 -25.48708 -23.95181 -22.61884 -21.60450 -21.47504 -20.94871 -19.60212 -18.76097 -18.01532 -17.30627 -17.08208 -16.82969 -16.72721 -16.34493 -15.78423 -15.73324 -15.49098 -15.11884 -14.96671 -14.63199 -14.11730 -13.99135 -13.96215 -13.85423 -13.79994 -13.49488 -13.33861 -13.31740 -13.16911 -13.12415 -12.85593 -12.74013 -12.52403 -12.48936 -12.32953 -12.19396 -11.90704 -11.87971 -11.86048 -11.82979 -11.29794 -11.18762 -10.87808 -10.84857 -10.67037 -9.87433 -9.48705 -9.39759 -8.94813 -7.92602 -5.20104 0.43851 0.50519 1.47672 1.49884 1.55807 1.68784 2.18188 2.57161 2.87437 3.38137 3.50783 3.68054 3.69631 3.78527 3.88526 3.95198 3.96120 4.01488 4.06369 4.14427 4.25932 4.28361 4.40614 4.46113 4.54672 4.59552 4.63932 4.65944 4.72010 4.72965 4.76384 4.81344 4.85890 4.87680 4.90681 5.01718 5.03195 5.07905 5.09922 5.13741 5.19866 5.28117 5.31240 5.38113 5.50255 5.60507 5.64653 5.64863 5.66880 5.71677 5.75190 6.18099 6.29138 6.64788 7.33419 7.36160 8.13617 8.36606 9.30310 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002231 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.608065 B =12548.411871 C =13630.798859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.096 4.096 5 C -0.112 4.112 6 C -0.132 4.132 7 C -0.069 4.069 8 C -0.095 4.095 9 C 0.516 3.484 10 O -0.581 6.581 11 N -0.694 5.694 12 C 0.150 3.850 13 H 0.082 0.918 14 C -0.174 4.174 15 C 0.181 3.819 16 H 0.084 0.916 17 N -0.720 5.720 18 C -0.240 4.240 19 H 0.077 0.923 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.969 3.031 23 H -0.281 1.281 24 H -0.299 1.299 25 H -0.276 1.276 26 C -0.112 4.112 27 C -0.106 4.106 28 C -0.131 4.131 29 C -0.114 4.114 30 C -0.128 4.128 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.414 0.586 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.376 0.624 45 H 0.249 0.751 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.057 0.943 50 H 0.094 0.906 51 H 0.046 0.954 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.323 14.829 -16.172 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.153 4.153 4 C -0.096 4.096 5 C -0.169 4.169 6 C -0.150 4.150 7 C -0.070 4.070 8 C -0.135 4.135 9 C 0.304 3.696 10 O -0.460 6.460 11 N -0.344 5.344 12 C 0.043 3.957 13 H 0.101 0.899 14 C -0.216 4.216 15 C 0.070 3.930 16 H 0.102 0.898 17 N -0.358 5.358 18 C -0.372 4.372 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.799 3.201 23 H -0.207 1.207 24 H -0.226 1.226 25 H -0.202 1.202 26 C -0.114 4.114 27 C -0.144 4.144 28 C -0.168 4.168 29 C -0.152 4.152 30 C -0.146 4.146 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.251 0.749 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.210 0.790 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.116 0.884 48 H 0.098 0.902 49 H 0.075 0.925 50 H 0.112 0.888 51 H 0.065 0.935 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.418 15.272 -15.627 28.578 hybrid contribution 1.509 -0.738 0.565 1.772 sum -16.909 14.534 -15.063 26.908 Atomic orbital electron populations 1.20811 0.89564 1.03260 1.03123 1.20209 0.97392 0.92986 0.98855 1.21154 0.93625 0.98258 1.02302 1.20194 0.94386 0.95972 0.99009 1.20811 0.99744 0.93221 1.03081 1.21062 0.99954 0.92086 1.01926 1.19476 0.93926 0.94198 0.99382 1.20733 1.03823 0.96226 0.92685 1.21094 0.76425 0.80024 0.92090 1.90711 1.52589 1.54705 1.48010 1.45495 1.57383 1.23783 1.07786 1.21309 0.95827 0.94440 0.84104 0.89946 1.24133 0.96554 1.00399 1.00535 1.21563 0.87983 0.89136 0.94294 0.89809 1.42556 1.12069 1.60281 1.20931 1.19637 0.90865 1.24807 1.01878 0.90508 1.25516 1.02305 1.01797 0.97149 1.69809 1.37780 1.42094 1.12228 0.85272 0.80346 0.77606 0.76892 1.20746 1.22572 1.20216 1.23367 0.96597 0.92279 0.99205 1.22589 1.00123 0.94965 0.96693 1.22650 1.01302 0.96010 0.96843 1.22537 1.00395 0.96661 0.95625 1.21069 0.93539 0.98345 1.01668 0.89924 0.91391 0.90871 0.84678 0.89951 0.90756 0.91725 0.86019 0.85690 0.85001 0.74874 0.91878 0.92419 0.78993 0.94179 0.90950 0.88428 0.90233 0.92463 0.88786 0.93538 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.24 0.71 -0.74 16 2 C -0.09 -1.79 5.88 -19.87 -0.12 -1.91 16 3 C -0.14 -2.55 9.36 22.27 0.21 -2.34 16 4 C -0.10 -1.90 5.88 -19.86 -0.12 -2.02 16 5 C -0.11 -1.63 10.01 71.24 0.71 -0.92 16 6 C -0.13 -2.86 9.36 22.27 0.21 -2.65 16 7 C -0.07 -1.46 4.37 -19.87 -0.09 -1.55 16 8 C -0.10 -1.57 5.83 29.10 0.17 -1.40 16 9 C 0.52 12.73 7.82 87.66 0.69 13.41 16 10 O -0.58 -20.08 15.63 -3.05 -0.05 -20.12 16 11 N -0.69 -15.90 5.05 -441.16 -2.23 -18.12 16 12 C 0.15 4.43 4.13 45.28 0.19 4.62 16 13 H 0.08 2.72 7.46 -2.39 -0.02 2.70 16 14 C -0.17 -6.20 7.69 31.23 0.24 -5.96 16 15 C 0.18 6.72 4.27 45.28 0.19 6.91 16 16 H 0.08 2.96 8.10 -2.39 -0.02 2.94 16 17 N -0.72 -35.05 5.33 -321.54 -1.71 -36.77 16 18 C -0.24 -12.94 9.97 84.03 0.84 -12.11 16 19 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 22 Si 0.97 45.67 29.55 68.60 2.03 47.69 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 C -0.11 -3.39 0.93 -52.25 -0.05 -3.44 16 27 C -0.11 -2.65 7.48 30.88 0.23 -2.42 16 28 C -0.13 -3.84 8.09 31.23 0.25 -3.59 16 29 C -0.11 -3.62 7.47 30.95 0.23 -3.39 16 30 C -0.13 -2.61 9.36 22.27 0.21 -2.40 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 33 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 34 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 37 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 38 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.13 1.51 8.09 -2.39 -0.02 1.49 16 40 H 0.13 1.38 8.08 -2.39 -0.02 1.36 16 41 H 0.41 7.21 8.62 -92.70 -0.80 6.41 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.38 19.88 5.93 -92.71 -0.55 19.33 16 45 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 49 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 50 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 51 H 0.05 1.78 6.43 -2.39 -0.02 1.77 16 52 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -71.62 421.99 3.07 -68.56 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: -0.43 Total: 42.96 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 5.18 Total: -25.69 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -3.66 Total: -113.39 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.62 3.07 -68.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.611 kcal (2) G-P(sol) polarization free energy of solvation -71.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds