Wall clock time and date at job start Wed Apr 1 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 119.99996 * 2 1 4 4 C 1.38234 * 120.00052 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00069 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99918 * 359.97438 * 4 3 2 7 7 C 1.38235 * 120.00030 * 0.02562 * 6 4 3 8 8 C 1.50704 * 120.00106 * 179.97438 * 7 6 4 9 9 C 1.50708 * 109.46839 * 89.99720 * 8 7 6 10 10 O 1.21277 * 120.00295 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99629 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00222 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.94398 * 333.10759 * 12 11 9 14 14 C 1.53950 * 113.65952 * 104.50431 * 12 11 9 15 15 C 1.53952 * 87.37851 * 89.78430 * 14 12 11 16 16 H 1.09004 * 113.65933 * 270.12700 * 15 14 12 17 17 N 1.46501 * 113.66271 * 139.16614 * 15 14 12 18 18 C 1.36932 * 119.99926 * 104.50250 * 17 15 14 19 19 H 1.08001 * 120.00097 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99812 * 179.97438 * 18 17 15 21 21 N 1.31626 * 119.99925 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99984 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47375 * 90.00480 * 22 20 18 24 24 H 1.48503 * 109.47179 * 210.00221 * 22 20 18 25 25 H 1.48499 * 109.47515 * 329.99928 * 22 20 18 26 26 C 1.52909 * 86.78252 * 24.68886 * 15 14 12 27 27 C 1.52907 * 121.13536 * 209.38099 * 26 15 14 28 28 C 1.53958 * 86.78205 * 209.38733 * 27 26 15 29 29 C 1.52915 * 121.13447 * 100.82251 * 26 15 14 30 30 C 1.38232 * 119.99918 * 180.27486 * 2 1 3 31 31 H 1.09000 * 109.47227 * 90.00230 * 1 2 3 32 32 H 1.09007 * 109.47340 * 210.00302 * 1 2 3 33 33 H 1.08999 * 109.47045 * 330.00130 * 1 2 3 34 34 H 1.07996 * 119.99972 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.47028 * 270.02061 * 5 4 3 36 36 H 1.08997 * 109.47221 * 30.02394 * 5 4 3 37 37 H 1.09007 * 109.47221 * 150.02479 * 5 4 3 38 38 H 1.08002 * 120.00510 * 179.97438 * 6 4 3 39 39 H 1.09000 * 109.47054 * 330.00206 * 8 7 6 40 40 H 1.08994 * 109.47437 * 209.99353 * 8 7 6 41 41 H 0.97001 * 119.99924 * 0.02562 * 11 9 8 42 42 H 1.09002 * 113.58302 * 335.14031 * 14 12 11 43 43 H 1.09004 * 113.57731 * 204.42204 * 14 12 11 44 44 H 0.97001 * 119.99346 * 284.50168 * 17 15 14 45 45 H 0.96996 * 119.99717 * 179.97438 * 21 20 18 46 46 H 1.08994 * 113.66316 * 323.85618 * 27 26 15 47 47 H 1.08997 * 113.66044 * 94.91866 * 27 26 15 48 48 H 1.09000 * 113.57861 * 270.13288 * 28 27 26 49 49 H 1.08990 * 113.65166 * 139.34938 * 28 27 26 50 50 H 1.09004 * 113.66330 * 265.09006 * 29 26 15 51 51 H 1.08999 * 113.66003 * 36.04585 * 29 26 15 52 52 H 1.08004 * 120.00260 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0005 7 6 3.5805 -1.1971 -0.0005 8 6 4.3340 -2.5023 -0.0011 9 6 4.5857 -2.9376 1.4196 10 8 4.1917 -2.2555 2.3417 11 7 5.2479 -4.0854 1.6653 12 6 5.4932 -4.5084 3.0464 13 1 5.5363 -3.6731 3.7453 14 6 4.5803 -5.6572 3.5121 15 6 5.6539 -6.6284 2.9883 16 1 5.5157 -6.9118 1.9449 17 7 5.8842 -7.7789 3.8655 18 6 5.3891 -9.0094 3.5251 19 1 4.8292 -9.1318 2.6097 20 6 5.6078 -10.0996 4.3560 21 7 6.2907 -9.9505 5.4714 22 14 4.9331 -11.7783 3.8913 23 1 5.9399 -12.5095 3.0807 24 1 4.6349 -12.5506 5.1241 25 1 3.6881 -11.6097 3.0997 26 6 6.6570 -5.4921 3.1901 27 6 7.9053 -5.3749 2.3148 28 6 8.5846 -4.7067 3.5241 29 6 7.5748 -5.4555 4.4126 30 6 2.1981 -1.1971 -0.0057 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6582 2.1324 -0.0004 35 1 4.5149 2.8168 -1.0289 36 1 3.7453 3.2619 0.5131 37 1 5.2869 2.3719 0.5120 38 1 5.3517 -0.0001 -0.0014 39 1 5.2862 -2.3718 -0.5153 40 1 3.7447 -3.2618 -0.5148 41 1 5.5628 -4.6312 0.9278 42 1 3.6380 -5.7137 2.9670 43 1 4.4465 -5.6970 4.5931 44 1 6.3874 -7.6689 4.6875 45 1 6.4431 -10.7123 6.0522 46 1 8.3417 -6.3362 2.0441 47 1 7.7798 -4.7094 1.4608 48 1 8.4662 -3.6234 3.5472 49 1 9.6167 -5.0224 3.6755 50 1 7.1852 -4.8545 5.2344 51 1 7.9169 -6.4398 4.7325 52 1 1.6582 -2.1325 -0.0098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078717599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:34 Heat of formation + Delta-G solvation = 27.271432 kcal Electronic energy + Delta-G solvation = -29498.570571 eV Core-core repulsion = 25656.788332 eV Total energy + Delta-G solvation = -3841.782239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.70022 -39.89848 -38.61540 -35.05941 -34.04987 -33.68373 -33.64761 -32.24559 -29.92269 -28.50763 -27.18940 -26.85843 -25.49489 -24.69745 -24.04886 -22.56340 -21.40046 -20.90314 -20.43877 -19.88635 -17.92954 -17.29723 -16.88184 -16.46246 -16.11611 -15.73044 -15.32817 -14.84819 -14.68540 -14.59417 -14.29694 -14.07886 -13.73504 -13.43414 -13.35005 -13.12950 -13.11677 -12.74955 -12.70327 -12.62958 -12.42919 -12.08613 -11.90024 -11.75710 -11.67899 -11.60144 -11.37314 -11.17542 -11.13278 -10.94533 -10.83354 -10.67493 -10.19983 -10.13992 -9.88025 -9.79795 -9.63995 -9.36792 -8.83224 -8.72477 -8.70581 -8.65673 -6.96516 -5.80364 -3.08587 1.20642 1.26071 2.70923 3.17529 3.40917 3.46554 3.48117 3.66991 4.43711 4.56262 4.56935 4.61402 4.74649 4.88328 4.96996 4.97431 5.03290 5.06482 5.10087 5.15173 5.20986 5.26711 5.32961 5.33734 5.39262 5.41022 5.42634 5.45723 5.63566 5.64484 5.66301 5.85216 5.91404 5.98725 6.01475 6.03898 6.05975 6.15968 6.18359 6.20716 6.37020 6.39638 6.40128 6.42646 6.49965 6.53600 6.66994 6.76963 6.89755 6.94714 7.08051 7.64004 7.67386 8.33577 8.38635 9.50001 10.08197 10.42942 11.42032 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.002280 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.360192 B =12279.595643 C =13510.965547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.123 4.123 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.054 4.054 8 C -0.104 4.104 9 C 0.515 3.485 10 O -0.533 6.533 11 N -0.706 5.706 12 C 0.144 3.856 13 H 0.093 0.907 14 C -0.174 4.174 15 C 0.181 3.819 16 H 0.073 0.927 17 N -0.709 5.709 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.140 4.140 29 C -0.105 4.105 30 C -0.110 4.110 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.400 0.600 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.097 0.903 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 22.098 -13.860 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.129 4.129 7 C -0.055 4.055 8 C -0.144 4.144 9 C 0.301 3.699 10 O -0.409 6.409 11 N -0.357 5.357 12 C 0.039 3.961 13 H 0.111 0.889 14 C -0.217 4.217 15 C 0.068 3.932 16 H 0.090 0.910 17 N -0.348 5.348 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.125 4.125 27 C -0.160 4.160 28 C -0.177 4.177 29 C -0.143 4.143 30 C -0.128 4.128 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.234 0.766 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.222 0.778 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.115 0.885 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.328 22.396 -13.238 26.228 hybrid contribution -0.081 -1.312 -0.202 1.330 sum -3.409 21.084 -13.440 25.235 Atomic orbital electron populations 1.20783 0.91253 1.02864 1.02134 1.19835 0.95963 0.93029 0.99463 1.20854 0.93495 0.97399 1.02382 1.19821 0.93809 0.95148 0.99628 1.20773 0.99975 0.94109 1.02097 1.20805 0.99424 0.91446 1.01208 1.19221 0.93482 0.93505 0.99262 1.20697 1.02236 0.96288 0.95180 1.20436 0.77835 0.80669 0.91005 1.90724 1.50157 1.53880 1.46147 1.45637 1.57847 1.23543 1.08624 1.21516 0.96041 0.95921 0.82671 0.88869 1.24279 0.98855 0.96758 1.01764 1.21375 0.91405 0.85879 0.94520 0.90953 1.42371 1.64217 1.03978 1.24197 1.19272 1.27563 0.85919 1.04570 0.91218 1.24750 1.00921 0.98080 0.97121 1.69654 1.44934 1.30255 1.13144 0.86202 0.78465 0.84440 0.77143 1.21742 1.21783 1.20789 1.23414 0.92963 0.97664 0.98496 1.22634 0.96527 1.00672 0.96188 1.22817 0.98469 0.99124 0.97308 1.22469 0.95300 1.01356 0.95207 1.20841 0.93375 0.97632 1.00963 0.91284 0.91455 0.91638 0.86380 0.91316 0.91645 0.91549 0.86391 0.88010 0.87890 0.76573 0.92437 0.89700 0.77803 0.93462 0.89640 0.92297 0.91005 0.91891 0.91864 0.88465 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.08 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.24 9.36 -39.58 -0.37 -1.61 16 4 C -0.08 -0.85 5.88 -104.63 -0.62 -1.47 16 5 C -0.11 -0.84 10.01 36.00 0.36 -0.48 16 6 C -0.11 -1.20 9.36 -39.58 -0.37 -1.57 16 7 C -0.05 -0.61 4.37 -104.62 -0.46 -1.07 16 8 C -0.10 -0.99 5.83 -29.03 -0.17 -1.16 16 9 C 0.51 6.84 7.82 -10.98 -0.09 6.76 16 10 O -0.53 -9.40 15.68 5.56 0.09 -9.31 16 11 N -0.71 -8.91 4.87 -53.29 -0.26 -9.17 16 12 C 0.14 2.21 4.09 -67.40 -0.28 1.94 16 13 H 0.09 1.56 7.55 -51.93 -0.39 1.17 16 14 C -0.17 -3.13 7.68 -25.75 -0.20 -3.33 16 15 C 0.18 3.43 4.28 -67.48 -0.29 3.14 16 16 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 17 N -0.71 -17.12 5.34 -52.99 -0.28 -17.40 16 18 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C -0.12 -1.93 0.91 -154.63 -0.14 -2.07 16 27 C -0.12 -1.68 7.60 -26.28 -0.20 -1.88 16 28 C -0.14 -1.87 8.08 -25.75 -0.21 -2.08 16 29 C -0.11 -1.68 7.16 -26.28 -0.19 -1.86 16 30 C -0.11 -1.24 9.36 -39.58 -0.37 -1.61 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.53 8.09 -51.92 -0.42 0.11 16 33 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.40 4.14 8.27 -40.82 -0.34 3.80 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.39 9.89 6.12 -40.82 -0.25 9.64 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 46 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 51 H 0.10 1.77 6.96 -51.93 -0.36 1.41 16 52 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 421.46 15.07 6.35 6.35 Total: -1.00 -32.57 421.46 -11.35 -43.92 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -8.87 Total: 12.96 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -4.08 Total: -17.52 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.18 Total: -53.48 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.57 -11.35 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.189 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds