Wall clock time and date at job start Wed Apr 1 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 119.99996 * 2 1 4 4 C 1.38234 * 120.00052 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00069 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99918 * 359.97438 * 4 3 2 7 7 C 1.38235 * 120.00030 * 0.02562 * 6 4 3 8 8 C 1.50704 * 120.00106 * 179.97438 * 7 6 4 9 9 C 1.50708 * 109.46839 * 89.99720 * 8 7 6 10 10 O 1.21277 * 120.00295 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99629 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00222 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.94398 * 333.10759 * 12 11 9 14 14 C 1.53950 * 113.65952 * 104.50431 * 12 11 9 15 15 C 1.53952 * 87.37851 * 89.78430 * 14 12 11 16 16 H 1.09004 * 113.65933 * 270.12700 * 15 14 12 17 17 N 1.46501 * 113.66271 * 139.16614 * 15 14 12 18 18 C 1.36932 * 119.99926 * 104.50250 * 17 15 14 19 19 H 1.08001 * 120.00097 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99812 * 179.97438 * 18 17 15 21 21 N 1.31626 * 119.99925 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99984 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47375 * 90.00480 * 22 20 18 24 24 H 1.48503 * 109.47179 * 210.00221 * 22 20 18 25 25 H 1.48499 * 109.47515 * 329.99928 * 22 20 18 26 26 C 1.52909 * 86.78252 * 24.68886 * 15 14 12 27 27 C 1.52907 * 121.13536 * 209.38099 * 26 15 14 28 28 C 1.53958 * 86.78205 * 209.38733 * 27 26 15 29 29 C 1.52915 * 121.13447 * 100.82251 * 26 15 14 30 30 C 1.38232 * 119.99918 * 180.27486 * 2 1 3 31 31 H 1.09000 * 109.47227 * 90.00230 * 1 2 3 32 32 H 1.09007 * 109.47340 * 210.00302 * 1 2 3 33 33 H 1.08999 * 109.47045 * 330.00130 * 1 2 3 34 34 H 1.07996 * 119.99972 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.47028 * 270.02061 * 5 4 3 36 36 H 1.08997 * 109.47221 * 30.02394 * 5 4 3 37 37 H 1.09007 * 109.47221 * 150.02479 * 5 4 3 38 38 H 1.08002 * 120.00510 * 179.97438 * 6 4 3 39 39 H 1.09000 * 109.47054 * 330.00206 * 8 7 6 40 40 H 1.08994 * 109.47437 * 209.99353 * 8 7 6 41 41 H 0.97001 * 119.99924 * 0.02562 * 11 9 8 42 42 H 1.09002 * 113.58302 * 335.14031 * 14 12 11 43 43 H 1.09004 * 113.57731 * 204.42204 * 14 12 11 44 44 H 0.97001 * 119.99346 * 284.50168 * 17 15 14 45 45 H 0.96996 * 119.99717 * 179.97438 * 21 20 18 46 46 H 1.08994 * 113.66316 * 323.85618 * 27 26 15 47 47 H 1.08997 * 113.66044 * 94.91866 * 27 26 15 48 48 H 1.09000 * 113.57861 * 270.13288 * 28 27 26 49 49 H 1.08990 * 113.65166 * 139.34938 * 28 27 26 50 50 H 1.09004 * 113.66330 * 265.09006 * 29 26 15 51 51 H 1.08999 * 113.66003 * 36.04585 * 29 26 15 52 52 H 1.08004 * 120.00260 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0005 7 6 3.5805 -1.1971 -0.0005 8 6 4.3340 -2.5023 -0.0011 9 6 4.5857 -2.9376 1.4196 10 8 4.1917 -2.2555 2.3417 11 7 5.2479 -4.0854 1.6653 12 6 5.4932 -4.5084 3.0464 13 1 5.5363 -3.6731 3.7453 14 6 4.5803 -5.6572 3.5121 15 6 5.6539 -6.6284 2.9883 16 1 5.5157 -6.9118 1.9449 17 7 5.8842 -7.7789 3.8655 18 6 5.3891 -9.0094 3.5251 19 1 4.8292 -9.1318 2.6097 20 6 5.6078 -10.0996 4.3560 21 7 6.2907 -9.9505 5.4714 22 14 4.9331 -11.7783 3.8913 23 1 5.9399 -12.5095 3.0807 24 1 4.6349 -12.5506 5.1241 25 1 3.6881 -11.6097 3.0997 26 6 6.6570 -5.4921 3.1901 27 6 7.9053 -5.3749 2.3148 28 6 8.5846 -4.7067 3.5241 29 6 7.5748 -5.4555 4.4126 30 6 2.1981 -1.1971 -0.0057 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6582 2.1324 -0.0004 35 1 4.5149 2.8168 -1.0289 36 1 3.7453 3.2619 0.5131 37 1 5.2869 2.3719 0.5120 38 1 5.3517 -0.0001 -0.0014 39 1 5.2862 -2.3718 -0.5153 40 1 3.7447 -3.2618 -0.5148 41 1 5.5628 -4.6312 0.9278 42 1 3.6380 -5.7137 2.9670 43 1 4.4465 -5.6970 4.5931 44 1 6.3874 -7.6689 4.6875 45 1 6.4431 -10.7123 6.0522 46 1 8.3417 -6.3362 2.0441 47 1 7.7798 -4.7094 1.4608 48 1 8.4662 -3.6234 3.5472 49 1 9.6167 -5.0224 3.6755 50 1 7.1852 -4.8545 5.2344 51 1 7.9169 -6.4398 4.7325 52 1 1.6582 -2.1325 -0.0098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078717599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:33 Heat of formation + Delta-G solvation = 9.795744 kcal Electronic energy + Delta-G solvation = -29499.328374 eV Core-core repulsion = 25656.788332 eV Total energy + Delta-G solvation = -3842.540042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.95815 -40.78291 -39.65183 -36.44325 -35.69285 -34.47672 -34.35642 -33.76327 -31.71005 -29.33136 -27.91241 -27.54196 -26.73461 -26.46270 -25.37927 -24.08385 -22.51249 -21.61068 -21.59270 -20.94749 -19.43185 -18.99497 -18.00835 -17.25781 -17.09330 -16.82229 -16.75487 -16.33070 -15.81904 -15.75335 -15.49566 -15.12059 -14.96076 -14.63653 -14.20611 -13.99197 -13.91664 -13.83759 -13.82686 -13.57895 -13.34729 -13.33903 -13.20083 -13.08441 -12.83609 -12.72621 -12.59265 -12.51546 -12.33320 -12.14978 -12.02483 -11.88301 -11.83360 -11.82407 -11.30875 -11.19723 -10.89294 -10.83972 -10.63966 -9.94301 -9.49134 -9.39968 -8.94648 -7.93586 -5.21013 0.43463 0.50312 1.47354 1.48461 1.56678 1.67220 2.14681 2.56669 2.86767 3.37412 3.45639 3.65520 3.67835 3.76463 3.88340 3.95102 3.95853 3.99866 4.02905 4.16569 4.25713 4.31195 4.40135 4.45793 4.54443 4.57774 4.63168 4.64029 4.71066 4.71898 4.76546 4.81157 4.84430 4.85811 4.96259 5.00778 5.01615 5.07757 5.08450 5.11148 5.13314 5.27844 5.30873 5.37929 5.49040 5.52125 5.64351 5.65254 5.67141 5.70071 5.74957 6.17835 6.28686 6.62409 7.31289 7.35368 8.13312 8.36272 9.29697 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.002280 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.360192 B =12279.595643 C =13510.965547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.094 4.094 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.070 4.070 8 C -0.095 4.095 9 C 0.516 3.484 10 O -0.579 6.579 11 N -0.695 5.695 12 C 0.165 3.835 13 H 0.082 0.918 14 C -0.174 4.174 15 C 0.168 3.832 16 H 0.081 0.919 17 N -0.722 5.722 18 C -0.239 4.239 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.970 3.030 23 H -0.286 1.286 24 H -0.299 1.299 25 H -0.271 1.271 26 C -0.113 4.113 27 C -0.113 4.113 28 C -0.125 4.125 29 C -0.117 4.117 30 C -0.132 4.132 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.415 0.585 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.376 0.624 45 H 0.250 0.750 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 23.521 -16.431 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.153 4.153 4 C -0.094 4.094 5 C -0.168 4.168 6 C -0.146 4.146 7 C -0.070 4.070 8 C -0.134 4.134 9 C 0.304 3.696 10 O -0.459 6.459 11 N -0.347 5.347 12 C 0.058 3.942 13 H 0.101 0.899 14 C -0.216 4.216 15 C 0.058 3.942 16 H 0.098 0.902 17 N -0.360 5.360 18 C -0.371 4.371 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.800 3.200 23 H -0.213 1.213 24 H -0.226 1.226 25 H -0.196 1.196 26 C -0.115 4.115 27 C -0.150 4.150 28 C -0.162 4.162 29 C -0.155 4.155 30 C -0.150 4.150 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.252 0.748 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.209 0.791 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.175 23.842 -15.884 28.824 hybrid contribution -0.193 -1.660 0.596 1.774 sum -3.368 22.182 -15.288 27.150 Atomic orbital electron populations 1.20813 0.89822 1.03152 1.03081 1.20189 0.97278 0.93084 0.99012 1.21153 0.93827 0.98059 1.02283 1.20208 0.94230 0.96146 0.98853 1.20810 0.99804 0.93014 1.03129 1.21068 1.00149 0.91733 1.01635 1.19474 0.93718 0.94386 0.99422 1.20737 1.04033 0.96070 0.92609 1.21101 0.76467 0.79865 0.92137 1.90713 1.51937 1.55246 1.47955 1.45517 1.57680 1.23717 1.07737 1.21109 0.94434 0.94507 0.84123 0.89949 1.24142 0.98950 0.98092 1.00440 1.21671 0.93314 0.85201 0.93986 0.90152 1.42543 1.64143 1.04659 1.24665 1.19671 1.26225 0.87001 1.04199 0.90566 1.25531 1.02231 1.01631 0.97481 1.69814 1.47021 1.30762 1.14409 0.85185 0.78169 0.80208 0.76468 1.21318 1.22622 1.19586 1.23250 0.93276 0.95561 0.99419 1.22592 0.94524 1.00893 0.97037 1.22763 0.98228 0.99603 0.95635 1.22466 0.96791 1.00417 0.95797 1.21065 0.93866 0.98180 1.01928 0.89945 0.91744 0.90756 0.84679 0.89918 0.90878 0.91375 0.85346 0.84930 0.85666 0.74801 0.92622 0.91920 0.79062 0.94147 0.90619 0.89389 0.89451 0.90901 0.92028 0.91270 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.01 71.24 0.71 -0.93 16 2 C -0.10 -1.91 5.88 -19.87 -0.12 -2.03 16 3 C -0.14 -2.55 9.36 22.27 0.21 -2.34 16 4 C -0.09 -1.79 5.88 -19.87 -0.12 -1.90 16 5 C -0.11 -1.45 10.01 71.24 0.71 -0.73 16 6 C -0.13 -2.59 9.36 22.27 0.21 -2.38 16 7 C -0.07 -1.46 4.37 -19.86 -0.09 -1.55 16 8 C -0.10 -1.56 5.83 29.11 0.17 -1.39 16 9 C 0.52 12.72 7.82 87.66 0.69 13.41 16 10 O -0.58 -20.02 15.68 -3.02 -0.05 -20.06 16 11 N -0.70 -15.93 4.87 -440.89 -2.15 -18.08 16 12 C 0.17 4.90 4.09 45.33 0.19 5.08 16 13 H 0.08 2.72 7.55 -2.39 -0.02 2.70 16 14 C -0.17 -6.29 7.68 31.23 0.24 -6.05 16 15 C 0.17 6.35 4.28 45.28 0.19 6.54 16 16 H 0.08 2.90 8.12 -2.38 -0.02 2.88 16 17 N -0.72 -35.53 5.34 -321.55 -1.72 -37.25 16 18 C -0.24 -13.02 9.98 84.04 0.84 -12.18 16 19 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 21 N -0.97 -59.05 13.06 21.65 0.28 -58.77 16 22 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 26 C -0.11 -3.43 0.91 -52.26 -0.05 -3.48 16 27 C -0.11 -2.82 7.60 30.89 0.23 -2.58 16 28 C -0.12 -3.08 8.08 31.23 0.25 -2.82 16 29 C -0.12 -3.71 7.16 30.89 0.22 -3.49 16 30 C -0.13 -2.86 9.36 22.27 0.21 -2.66 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.96 8.09 -2.38 -0.02 0.95 16 33 H 0.07 0.93 8.09 -2.39 -0.02 0.92 16 34 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 37 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 38 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.13 1.36 8.09 -2.39 -0.02 1.34 16 40 H 0.13 1.51 8.08 -2.39 -0.02 1.49 16 41 H 0.41 7.18 8.27 -92.71 -0.77 6.41 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 44 H 0.38 19.96 6.12 -92.71 -0.57 19.39 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.09 1.70 7.51 -2.39 -0.02 1.68 16 48 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 51 H 0.07 2.62 6.96 -2.39 -0.02 2.60 16 52 H 0.12 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -72.15 421.46 3.15 -69.00 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -0.42 Total: 42.61 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 5.17 Total: -25.37 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.58 Total: -114.09 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.05 Total: -20.06 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -72.15 3.15 -69.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.800 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds