Wall clock time and date at job start Wed Apr 1 2020 02:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38236 * 120.00510 * 2 1 4 4 C 1.38229 * 120.00534 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00253 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99664 * 0.02562 * 4 3 2 7 7 C 1.38232 * 120.00312 * 0.02562 * 6 4 3 8 8 C 1.50697 * 120.00227 * 179.97438 * 7 6 4 9 9 C 1.50705 * 109.47009 * 89.99404 * 8 7 6 10 10 O 1.21276 * 119.99940 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99999 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00184 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.88200 * 336.34763 * 12 11 9 14 14 C 1.53947 * 113.66168 * 107.81602 * 12 11 9 15 15 C 1.53957 * 87.29654 * 139.20574 * 14 12 11 16 16 H 1.08999 * 113.74605 * 89.74708 * 15 14 12 17 17 N 1.46499 * 113.66372 * 220.79461 * 15 14 12 18 18 C 1.36939 * 119.99933 * 252.46113 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31624 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47144 * 90.00258 * 22 20 18 24 24 H 1.48500 * 109.47140 * 210.00775 * 22 20 18 25 25 H 1.48502 * 109.46967 * 330.00206 * 22 20 18 26 26 C 1.52908 * 86.77901 * 335.26633 * 15 14 12 27 27 C 1.52908 * 121.13642 * 259.17649 * 26 15 14 28 28 C 1.53946 * 86.78542 * 209.38235 * 27 26 15 29 29 C 1.52910 * 121.13509 * 150.61875 * 26 15 14 30 30 C 1.38236 * 120.00029 * 180.27243 * 2 1 3 31 31 H 1.09002 * 109.47076 * 89.99925 * 1 2 3 32 32 H 1.08996 * 109.47308 * 210.00218 * 1 2 3 33 33 H 1.09003 * 109.46933 * 330.00569 * 1 2 3 34 34 H 1.08005 * 119.99509 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.47383 * 270.02414 * 5 4 3 36 36 H 1.09003 * 109.47417 * 30.02475 * 5 4 3 37 37 H 1.08999 * 109.47555 * 150.02649 * 5 4 3 38 38 H 1.08008 * 119.99940 * 179.97438 * 6 4 3 39 39 H 1.09001 * 109.47360 * 329.99669 * 8 7 6 40 40 H 1.09000 * 109.47616 * 209.99680 * 8 7 6 41 41 H 0.97006 * 119.99964 * 0.02562 * 11 9 8 42 42 H 1.09000 * 113.58267 * 24.60486 * 14 12 11 43 43 H 1.08999 * 113.57745 * 253.80726 * 14 12 11 44 44 H 0.97001 * 119.99790 * 72.18086 * 17 15 14 45 45 H 0.96998 * 119.99409 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.66478 * 323.85928 * 27 26 15 47 47 H 1.09008 * 113.65934 * 94.91137 * 27 26 15 48 48 H 1.08996 * 113.58314 * 270.13495 * 28 27 26 49 49 H 1.08999 * 113.65166 * 139.34935 * 28 27 26 50 50 H 1.09004 * 113.66092 * 265.08702 * 29 26 15 51 51 H 1.08994 * 113.66382 * 36.05415 * 29 26 15 52 52 H 1.08002 * 120.00004 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5021 -0.0011 6 6 4.2716 -0.0001 -0.0016 7 6 3.5805 -1.1972 -0.0027 8 6 4.3339 -2.5023 -0.0044 9 6 4.5857 -2.9389 1.4159 10 8 4.1917 -2.2576 2.3385 11 7 5.2479 -4.0870 1.6606 12 6 5.4922 -4.5117 3.0412 13 1 5.4786 -3.6824 3.7485 14 6 4.6356 -5.7137 3.4787 15 6 5.8887 -6.2544 4.1912 16 1 5.9870 -5.9168 5.2229 17 7 6.0701 -7.7007 4.0453 18 6 5.8457 -8.5300 5.1117 19 1 5.5393 -8.1172 6.0615 20 6 6.0119 -9.9010 4.9718 21 7 6.3857 -10.4039 3.8143 22 14 5.7065 -11.0321 6.4267 23 1 4.2834 -11.4559 6.4340 24 1 6.5789 -12.2286 6.3152 25 1 6.0146 -10.3107 7.6877 26 6 6.7052 -5.4299 3.1954 27 6 7.3619 -6.0832 1.9788 28 6 8.4360 -4.9847 2.0772 29 6 8.0779 -4.8702 3.5702 30 6 2.1981 -1.1971 -0.0057 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5138 34 1 1.6582 2.1324 -0.0004 35 1 4.5150 2.8168 -1.0289 36 1 3.7454 3.2618 0.5132 37 1 5.2869 2.3718 0.5119 38 1 5.3517 -0.0002 -0.0024 39 1 5.2861 -2.3715 -0.5185 40 1 3.7446 -3.2615 -0.5188 41 1 5.5627 -4.6321 0.9226 42 1 4.3029 -6.3371 2.6488 43 1 3.8272 -5.4481 4.1599 44 1 6.3452 -8.0714 3.1921 45 1 6.5021 -11.3619 3.7167 46 1 7.7426 -7.0860 2.1730 47 1 6.7589 -6.0256 1.0725 48 1 8.1984 -4.0899 1.5020 49 1 9.4486 -5.3460 1.8981 50 1 8.0470 -3.8436 3.9351 51 1 8.6592 -5.5313 4.2129 52 1 1.6581 -2.1325 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078717600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:38 Heat of formation + Delta-G solvation = 26.797859 kcal Electronic energy + Delta-G solvation = -29510.614881 eV Core-core repulsion = 25668.812106 eV Total energy + Delta-G solvation = -3841.802775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.70117 -39.89876 -38.59534 -34.91777 -34.07474 -33.68139 -33.63937 -32.44682 -29.93891 -28.55359 -27.20276 -26.85488 -25.52512 -24.62332 -24.06743 -22.61016 -21.08731 -20.90018 -20.39701 -20.04723 -18.00015 -17.32173 -16.70108 -16.48438 -16.11602 -16.05315 -15.21259 -14.78695 -14.72252 -14.58338 -14.31971 -14.17711 -13.69483 -13.43289 -13.18063 -13.11786 -13.01711 -12.83604 -12.74798 -12.59897 -12.45760 -12.10951 -11.91783 -11.76740 -11.63745 -11.49396 -11.31232 -11.18147 -11.12942 -10.99133 -10.81075 -10.72921 -10.22996 -10.09213 -9.97893 -9.84649 -9.62931 -9.42838 -8.82971 -8.71229 -8.67440 -8.64944 -6.97129 -5.81088 -3.09066 1.21335 1.26412 2.72936 3.24706 3.41809 3.47612 3.48626 3.69660 4.44719 4.56730 4.57386 4.61688 4.74719 4.90686 4.92019 4.97501 5.01832 5.06974 5.10304 5.14843 5.15496 5.27634 5.33609 5.33930 5.39667 5.41248 5.42868 5.45083 5.63211 5.63833 5.66292 5.84786 5.90074 5.97832 6.01659 6.02011 6.04209 6.13316 6.16088 6.25729 6.32431 6.39114 6.40067 6.40609 6.50430 6.60033 6.60945 6.77251 6.89809 6.92952 7.07827 7.67714 7.68760 8.35279 8.38116 9.49618 10.06839 10.41874 11.41346 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.002188 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.331323 B =12796.632959 C =13706.476184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.054 4.054 8 C -0.106 4.106 9 C 0.513 3.487 10 O -0.536 6.536 11 N -0.714 5.714 12 C 0.145 3.855 13 H 0.110 0.890 14 C -0.174 4.174 15 C 0.181 3.819 16 H 0.080 0.920 17 N -0.706 5.706 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.124 4.124 27 C -0.107 4.107 28 C -0.139 4.139 29 C -0.122 4.122 30 C -0.110 4.110 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.399 0.601 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.386 0.614 45 H 0.255 0.745 46 H 0.097 0.903 47 H 0.056 0.944 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.059 0.941 51 H 0.086 0.914 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 22.352 -12.487 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.129 4.129 7 C -0.054 4.054 8 C -0.145 4.145 9 C 0.298 3.702 10 O -0.412 6.412 11 N -0.365 5.365 12 C 0.040 3.960 13 H 0.128 0.872 14 C -0.217 4.217 15 C 0.068 3.932 16 H 0.098 0.902 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.127 4.127 27 C -0.145 4.145 28 C -0.177 4.177 29 C -0.160 4.160 30 C -0.128 4.128 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.234 0.766 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.221 0.779 45 H 0.065 0.935 46 H 0.116 0.884 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.104 0.896 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.996 22.714 -11.631 25.830 hybrid contribution 0.019 -1.191 0.109 1.196 sum -3.978 21.523 -11.522 24.735 Atomic orbital electron populations 1.20780 0.91260 1.02851 1.02129 1.19832 0.95954 0.93028 0.99478 1.20852 0.93494 0.97393 1.02422 1.19819 0.93808 0.95143 0.99625 1.20772 0.99974 0.94108 1.02096 1.20805 0.99418 0.91447 1.01225 1.19223 0.93480 0.93520 0.99180 1.20711 1.02166 0.96257 0.95408 1.20459 0.77908 0.80864 0.90930 1.90714 1.50395 1.54019 1.46094 1.46047 1.57651 1.23481 1.09287 1.22139 0.95671 0.95535 0.82614 0.87240 1.24285 0.99772 0.96281 1.01340 1.21151 0.91372 0.85158 0.95500 0.90239 1.42315 1.80220 0.99318 1.12578 1.19311 1.38397 0.88218 0.91330 0.91076 1.24743 1.02280 0.96841 0.97017 1.69654 1.53608 1.11849 1.23023 0.86190 0.77546 0.80556 0.81907 1.21732 1.21812 1.20730 1.23484 0.93094 0.97244 0.98878 1.22442 0.96678 0.99321 0.96054 1.22825 0.98866 0.98731 0.97264 1.22674 0.96635 1.00412 0.96239 1.20837 0.93379 0.97615 1.00998 0.91290 0.91465 0.91641 0.86386 0.91318 0.91648 0.91550 0.86407 0.88099 0.87997 0.76577 0.90241 0.92227 0.77895 0.93498 0.88417 0.92524 0.91088 0.91922 0.92180 0.89595 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.00 0.36 -0.54 16 2 C -0.08 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.24 9.36 -39.59 -0.37 -1.61 16 4 C -0.08 -0.86 5.88 -104.63 -0.62 -1.47 16 5 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 6 C -0.11 -1.22 9.36 -39.58 -0.37 -1.59 16 7 C -0.05 -0.61 4.37 -104.63 -0.46 -1.07 16 8 C -0.11 -1.03 5.83 -29.03 -0.17 -1.20 16 9 C 0.51 6.87 7.82 -10.98 -0.09 6.78 16 10 O -0.54 -9.42 15.63 5.56 0.09 -9.34 16 11 N -0.71 -9.08 5.28 -53.37 -0.28 -9.36 16 12 C 0.15 2.21 4.12 -67.48 -0.28 1.93 16 13 H 0.11 1.79 7.46 -51.93 -0.39 1.41 16 14 C -0.17 -3.08 7.68 -25.75 -0.20 -3.28 16 15 C 0.18 3.51 4.36 -67.48 -0.29 3.21 16 16 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 17 N -0.71 -16.96 5.30 -52.99 -0.28 -17.24 16 18 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 22 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.12 -1.94 1.06 -154.71 -0.16 -2.10 16 27 C -0.11 -1.57 6.78 -26.29 -0.18 -1.75 16 28 C -0.14 -1.78 8.08 -25.75 -0.21 -1.98 16 29 C -0.12 -1.76 7.84 -26.28 -0.21 -1.97 16 30 C -0.11 -1.25 9.36 -39.58 -0.37 -1.62 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 40 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 41 H 0.40 4.28 6.72 -40.82 -0.27 4.00 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.39 9.70 6.23 -40.82 -0.25 9.44 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.10 1.71 7.03 -51.93 -0.36 1.34 16 47 H 0.06 0.73 6.42 -51.92 -0.33 0.40 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 52 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 419.35 15.07 6.32 6.32 Total: -1.00 -32.15 419.35 -11.31 -43.47 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -8.75 Total: 13.12 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -4.11 Total: -17.37 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.16 Total: -53.33 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.15 -11.31 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.265 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds