Wall clock time and date at job start Wed Apr 1 2020 02:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.99832 * 2 1 4 4 C 1.38214 * 120.00344 * 180.02562 * 3 2 1 5 5 C 1.38264 * 119.99489 * 359.95615 * 4 3 2 6 6 C 1.50697 * 119.99572 * 180.02562 * 5 4 3 7 7 C 1.38212 * 120.00003 * 359.97412 * 5 4 3 8 8 C 1.50703 * 119.99703 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46714 * 85.00340 * 8 7 5 10 10 O 1.21275 * 120.00404 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99413 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99461 * 180.02562 * 11 9 8 13 13 H 1.08991 * 112.88571 * 23.65245 * 12 11 9 14 14 C 1.53955 * 113.65935 * 252.18412 * 12 11 9 15 15 C 1.53950 * 87.29560 * 220.79460 * 14 12 11 16 16 H 1.09003 * 113.66520 * 270.26660 * 15 14 12 17 17 N 1.46500 * 113.74704 * 139.21430 * 15 14 12 18 18 C 1.36936 * 119.99935 * 107.77207 * 17 15 14 19 19 H 1.08002 * 119.99809 * 0.02562 * 18 17 15 20 20 C 1.38803 * 120.00282 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00261 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99931 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47492 * 90.00191 * 22 20 18 24 24 H 1.48503 * 109.47092 * 209.99974 * 22 20 18 25 25 H 1.48496 * 109.46973 * 329.99802 * 22 20 18 26 26 C 1.52907 * 113.66159 * 155.00004 * 12 11 9 27 27 C 1.52909 * 121.13625 * 13.65219 * 26 12 11 28 28 C 1.53953 * 86.78247 * 209.38193 * 27 26 12 29 29 C 1.52909 * 121.13625 * 265.08979 * 26 12 11 30 30 C 1.38211 * 120.00138 * 180.16172 * 2 1 3 31 31 H 1.09004 * 109.46748 * 90.00204 * 1 2 3 32 32 H 1.09005 * 109.46863 * 209.99896 * 1 2 3 33 33 H 1.08997 * 109.47718 * 330.00356 * 1 2 3 34 34 H 1.07998 * 119.99674 * 0.02562 * 3 2 1 35 35 H 1.07990 * 120.00412 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.46965 * 269.97558 * 6 5 4 37 37 H 1.09002 * 109.47579 * 29.97660 * 6 5 4 38 38 H 1.09001 * 109.47361 * 149.97697 * 6 5 4 39 39 H 1.08994 * 109.47426 * 325.00718 * 8 7 5 40 40 H 1.08994 * 109.47083 * 205.00400 * 8 7 5 41 41 H 0.96995 * 120.00725 * 0.02562 * 11 9 8 42 42 H 1.08999 * 113.58121 * 335.39936 * 14 12 11 43 43 H 1.09000 * 113.57495 * 106.19274 * 14 12 11 44 44 H 0.97001 * 120.00473 * 287.77707 * 17 15 14 45 45 H 0.96999 * 120.00324 * 179.97438 * 21 20 18 46 46 H 1.09007 * 113.66271 * 323.84820 * 27 26 12 47 47 H 1.09002 * 113.66600 * 94.90793 * 27 26 12 48 48 H 1.09002 * 113.57682 * 270.13011 * 28 27 26 49 49 H 1.08995 * 113.58442 * 139.33592 * 28 27 26 50 50 H 1.08998 * 113.65988 * 265.08366 * 29 26 12 51 51 H 1.08993 * 113.66264 * 36.05376 * 29 26 12 52 52 H 1.07994 * 120.00375 * 0.04682 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0001 -0.0002 6 6 5.7787 0.0002 -0.0002 7 6 3.5806 -1.1969 0.0013 8 6 4.3342 -2.5019 0.0023 9 6 4.6931 -2.8736 1.4180 10 8 4.3685 -2.1503 2.3358 11 7 5.3739 -4.0104 1.6642 12 6 5.7223 -4.3720 3.0406 13 1 5.0653 -3.9124 3.7788 14 6 7.2201 -4.2150 3.3604 15 6 7.1168 -5.5364 4.1434 16 1 6.8529 -5.4038 5.1926 17 7 8.2647 -6.4264 3.9526 18 6 9.1690 -6.6042 4.9655 19 1 9.0357 -6.0885 5.9051 20 6 10.2569 -7.4470 4.7847 21 7 11.1258 -7.6182 5.7584 22 14 10.4879 -8.3383 3.1594 23 1 11.3028 -7.4981 2.2454 24 1 11.1832 -9.6288 3.3970 25 1 9.1616 -8.5966 2.5436 26 6 5.9236 -5.8735 3.2484 27 6 6.0707 -6.8235 2.0593 28 6 5.4434 -7.9054 2.9572 29 6 4.7848 -6.7619 3.7502 30 6 2.1981 -1.1969 -0.0034 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 1.6582 2.1326 0.0004 35 1 4.1203 2.1327 -0.0010 36 1 6.1420 -0.0005 -1.0279 37 1 6.1420 0.8906 0.5130 38 1 6.1421 -0.8894 0.5143 39 1 5.2447 -2.3962 -0.5875 40 1 3.7092 -3.2827 -0.4310 41 1 5.6332 -4.5892 0.9303 42 1 7.8624 -4.2776 2.4820 43 1 7.4437 -3.3525 3.9882 44 1 8.3843 -6.8898 3.1089 45 1 11.8859 -8.2074 5.6322 46 1 5.4521 -6.5525 1.2037 47 1 7.1065 -7.0271 1.7874 48 1 6.1750 -8.4712 3.5341 49 1 4.7289 -8.5433 2.4371 50 1 4.7934 -6.9164 4.8292 51 1 3.8047 -6.4726 3.3712 52 1 1.6582 -2.1322 -0.0068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078717989.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:42 Heat of formation + Delta-G solvation = 33.260948 kcal Electronic energy + Delta-G solvation = -29928.800274 eV Core-core repulsion = 26087.277759 eV Total energy + Delta-G solvation = -3841.522515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.81135 -40.05608 -38.63876 -35.01462 -34.39288 -34.20026 -32.75564 -32.23883 -30.48966 -29.48129 -28.11608 -25.66006 -25.03856 -24.58185 -24.26584 -22.62796 -21.86208 -20.71475 -20.57975 -19.89360 -18.43437 -17.43471 -16.83084 -16.41165 -16.27647 -15.91373 -15.22434 -14.98819 -14.90059 -14.69134 -14.50192 -14.09887 -13.80030 -13.46849 -13.25052 -13.14256 -12.95357 -12.92033 -12.72146 -12.64925 -12.31238 -12.14387 -12.10323 -11.92879 -11.81242 -11.67295 -11.55081 -11.14896 -11.12744 -11.05908 -10.89516 -10.83329 -10.27514 -10.07967 -10.03321 -9.91799 -9.71351 -9.54008 -8.92481 -8.89523 -8.71971 -8.52327 -7.30690 -5.81747 -3.17480 1.16950 1.24815 2.66059 3.18902 3.30877 3.33560 3.40433 3.64692 4.41067 4.53141 4.56034 4.65362 4.69479 4.77013 4.82077 4.85058 4.93382 4.98880 5.00598 5.08336 5.13610 5.19843 5.28555 5.33264 5.34032 5.37314 5.45810 5.51395 5.54849 5.56180 5.62822 5.75137 5.78790 5.81980 5.84517 5.92544 5.94724 6.05911 6.12412 6.16508 6.24125 6.27799 6.28327 6.41814 6.49405 6.50072 6.52139 6.68664 6.76693 6.87394 6.93304 7.58927 7.95109 8.28511 8.37900 9.15295 9.87412 10.07190 11.36430 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.002385 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.506941 B =11736.110370 C =12358.066720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.072 4.072 6 C -0.117 4.117 7 C -0.060 4.060 8 C -0.106 4.106 9 C 0.513 3.487 10 O -0.532 6.532 11 N -0.715 5.715 12 C 0.133 3.867 13 H 0.112 0.888 14 C -0.173 4.173 15 C 0.199 3.801 16 H 0.090 0.910 17 N -0.730 5.730 18 C -0.246 4.246 19 H 0.092 0.908 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.880 3.120 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.276 1.276 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.133 4.133 29 C -0.124 4.124 30 C -0.104 4.104 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.398 0.602 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.363 0.637 45 H 0.260 0.740 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.073 0.927 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.464 12.213 -16.282 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.072 4.072 6 C -0.174 4.174 7 C -0.060 4.060 8 C -0.146 4.146 9 C 0.298 3.702 10 O -0.408 6.408 11 N -0.365 5.365 12 C 0.028 3.972 13 H 0.129 0.871 14 C -0.216 4.216 15 C 0.087 3.913 16 H 0.108 0.892 17 N -0.371 5.371 18 C -0.376 4.376 19 H 0.109 0.891 20 C -0.190 4.190 21 N -0.579 5.579 22 Si 0.711 3.289 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.126 4.126 27 C -0.156 4.156 28 C -0.170 4.170 29 C -0.162 4.162 30 C -0.122 4.122 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.232 0.768 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.197 0.803 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.092 0.908 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.529 12.705 -15.363 27.908 hybrid contribution 0.492 -0.961 -1.510 1.856 sum -19.037 11.744 -16.873 28.019 Atomic orbital electron populations 1.20763 0.91329 1.02746 1.02049 1.19818 0.95926 0.93101 1.00579 1.20969 0.94149 0.97370 1.01164 1.20959 0.94146 0.97340 1.01037 1.19688 0.95927 0.92560 0.99070 1.20828 0.91340 1.03290 1.01911 1.19092 0.93272 0.93140 1.00503 1.20722 1.02025 0.96408 0.95481 1.20451 0.77737 0.81136 0.90839 1.90724 1.53311 1.50562 1.46167 1.46000 1.57265 1.23637 1.09637 1.22250 0.96963 0.94989 0.83001 0.87052 1.24230 0.94413 1.01323 1.01590 1.21039 0.85349 0.88747 0.96163 0.89247 1.42683 1.26153 1.52789 1.15431 1.19128 1.01122 1.22754 0.94607 0.89053 1.24676 0.97378 0.99819 0.97126 1.69694 1.15036 1.41516 1.31615 0.86619 0.77641 0.79815 0.84854 1.21104 1.21681 1.20227 1.23639 0.98343 0.91917 0.98689 1.22460 1.01114 0.96282 0.95774 1.22753 0.99831 0.96049 0.98374 1.22682 0.96766 0.96271 1.00436 1.20817 0.93222 0.97572 1.00601 0.91388 0.91628 0.91654 0.86311 0.86154 0.91215 0.91400 0.91477 0.87949 0.88241 0.76764 0.90324 0.91698 0.80250 0.93013 0.90741 0.91164 0.89347 0.92277 0.91179 0.90838 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.09 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 4 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 5 C -0.07 -0.80 5.88 -104.62 -0.62 -1.41 16 6 C -0.12 -1.13 9.22 36.00 0.33 -0.80 16 7 C -0.06 -0.66 4.37 -104.62 -0.46 -1.11 16 8 C -0.11 -0.99 5.15 -29.03 -0.15 -1.14 16 9 C 0.51 6.49 7.05 -10.98 -0.08 6.41 16 10 O -0.53 -8.96 15.63 5.56 0.09 -8.87 16 11 N -0.71 -8.43 5.25 -53.37 -0.28 -8.71 16 12 C 0.13 1.89 4.12 -67.48 -0.28 1.61 16 13 H 0.11 1.73 7.46 -51.93 -0.39 1.34 16 14 C -0.17 -2.86 7.69 -25.75 -0.20 -3.06 16 15 C 0.20 3.65 4.36 -67.48 -0.29 3.35 16 16 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 17 N -0.73 -16.30 5.13 -52.99 -0.27 -16.57 16 18 C -0.25 -6.71 10.45 -15.06 -0.16 -6.87 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.76 13.97 55.49 0.78 -27.98 16 22 Si 0.88 21.43 27.74 -169.99 -4.71 16.71 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 26 C -0.12 -1.80 1.06 -154.71 -0.16 -1.96 16 27 C -0.12 -1.59 6.77 -26.28 -0.18 -1.77 16 28 C -0.13 -1.84 8.08 -25.75 -0.21 -2.05 16 29 C -0.12 -1.68 7.84 -26.28 -0.21 -1.88 16 30 C -0.10 -1.10 9.34 -39.58 -0.37 -1.46 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.07 0.72 6.16 -51.93 -0.32 0.40 16 39 H 0.10 0.78 6.99 -51.93 -0.36 0.41 16 40 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 41 H 0.40 3.81 7.03 -40.82 -0.29 3.52 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.36 7.93 3.78 -40.82 -0.15 7.77 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.07 0.80 7.03 -51.93 -0.36 0.43 16 47 H 0.07 1.07 6.42 -51.93 -0.33 0.74 16 48 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 49 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 411.59 15.07 6.20 6.20 Total: -1.00 -32.97 411.59 -10.89 -43.86 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -8.55 Total: 12.52 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -4.14 Total: -17.17 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.22 Total: -53.26 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.97 -10.89 -43.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717989.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.125 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds