Wall clock time and date at job start Wed Apr 1 2020 02:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.99832 * 2 1 4 4 C 1.38214 * 120.00344 * 180.02562 * 3 2 1 5 5 C 1.38264 * 119.99489 * 359.95615 * 4 3 2 6 6 C 1.50697 * 119.99572 * 180.02562 * 5 4 3 7 7 C 1.38212 * 120.00003 * 359.97412 * 5 4 3 8 8 C 1.50703 * 119.99703 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46714 * 85.00340 * 8 7 5 10 10 O 1.21275 * 120.00404 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99413 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99461 * 180.02562 * 11 9 8 13 13 H 1.08991 * 112.88571 * 23.65245 * 12 11 9 14 14 C 1.53955 * 113.65935 * 252.18412 * 12 11 9 15 15 C 1.53950 * 87.29560 * 220.79460 * 14 12 11 16 16 H 1.09003 * 113.66520 * 270.26660 * 15 14 12 17 17 N 1.46500 * 113.74704 * 139.21430 * 15 14 12 18 18 C 1.36936 * 119.99935 * 107.77207 * 17 15 14 19 19 H 1.08002 * 119.99809 * 0.02562 * 18 17 15 20 20 C 1.38803 * 120.00282 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00261 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99931 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47492 * 90.00191 * 22 20 18 24 24 H 1.48503 * 109.47092 * 209.99974 * 22 20 18 25 25 H 1.48496 * 109.46973 * 329.99802 * 22 20 18 26 26 C 1.52907 * 113.66159 * 155.00004 * 12 11 9 27 27 C 1.52909 * 121.13625 * 13.65219 * 26 12 11 28 28 C 1.53953 * 86.78247 * 209.38193 * 27 26 12 29 29 C 1.52909 * 121.13625 * 265.08979 * 26 12 11 30 30 C 1.38211 * 120.00138 * 180.16172 * 2 1 3 31 31 H 1.09004 * 109.46748 * 90.00204 * 1 2 3 32 32 H 1.09005 * 109.46863 * 209.99896 * 1 2 3 33 33 H 1.08997 * 109.47718 * 330.00356 * 1 2 3 34 34 H 1.07998 * 119.99674 * 0.02562 * 3 2 1 35 35 H 1.07990 * 120.00412 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.46965 * 269.97558 * 6 5 4 37 37 H 1.09002 * 109.47579 * 29.97660 * 6 5 4 38 38 H 1.09001 * 109.47361 * 149.97697 * 6 5 4 39 39 H 1.08994 * 109.47426 * 325.00718 * 8 7 5 40 40 H 1.08994 * 109.47083 * 205.00400 * 8 7 5 41 41 H 0.96995 * 120.00725 * 0.02562 * 11 9 8 42 42 H 1.08999 * 113.58121 * 335.39936 * 14 12 11 43 43 H 1.09000 * 113.57495 * 106.19274 * 14 12 11 44 44 H 0.97001 * 120.00473 * 287.77707 * 17 15 14 45 45 H 0.96999 * 120.00324 * 179.97438 * 21 20 18 46 46 H 1.09007 * 113.66271 * 323.84820 * 27 26 12 47 47 H 1.09002 * 113.66600 * 94.90793 * 27 26 12 48 48 H 1.09002 * 113.57682 * 270.13011 * 28 27 26 49 49 H 1.08995 * 113.58442 * 139.33592 * 28 27 26 50 50 H 1.08998 * 113.65988 * 265.08366 * 29 26 12 51 51 H 1.08993 * 113.66264 * 36.05376 * 29 26 12 52 52 H 1.07994 * 120.00375 * 0.04682 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0001 -0.0002 6 6 5.7787 0.0002 -0.0002 7 6 3.5806 -1.1969 0.0013 8 6 4.3342 -2.5019 0.0023 9 6 4.6931 -2.8736 1.4180 10 8 4.3685 -2.1503 2.3358 11 7 5.3739 -4.0104 1.6642 12 6 5.7223 -4.3720 3.0406 13 1 5.0653 -3.9124 3.7788 14 6 7.2201 -4.2150 3.3604 15 6 7.1168 -5.5364 4.1434 16 1 6.8529 -5.4038 5.1926 17 7 8.2647 -6.4264 3.9526 18 6 9.1690 -6.6042 4.9655 19 1 9.0357 -6.0885 5.9051 20 6 10.2569 -7.4470 4.7847 21 7 11.1258 -7.6182 5.7584 22 14 10.4879 -8.3383 3.1594 23 1 11.3028 -7.4981 2.2454 24 1 11.1832 -9.6288 3.3970 25 1 9.1616 -8.5966 2.5436 26 6 5.9236 -5.8735 3.2484 27 6 6.0707 -6.8235 2.0593 28 6 5.4434 -7.9054 2.9572 29 6 4.7848 -6.7619 3.7502 30 6 2.1981 -1.1969 -0.0034 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 1.6582 2.1326 0.0004 35 1 4.1203 2.1327 -0.0010 36 1 6.1420 -0.0005 -1.0279 37 1 6.1420 0.8906 0.5130 38 1 6.1421 -0.8894 0.5143 39 1 5.2447 -2.3962 -0.5875 40 1 3.7092 -3.2827 -0.4310 41 1 5.6332 -4.5892 0.9303 42 1 7.8624 -4.2776 2.4820 43 1 7.4437 -3.3525 3.9882 44 1 8.3843 -6.8898 3.1089 45 1 11.8859 -8.2074 5.6322 46 1 5.4521 -6.5525 1.2037 47 1 7.1065 -7.0271 1.7874 48 1 6.1750 -8.4712 3.5341 49 1 4.7289 -8.5433 2.4371 50 1 4.7934 -6.9164 4.8292 51 1 3.8047 -6.4726 3.3712 52 1 1.6582 -2.1322 -0.0068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078717989.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:41 Heat of formation + Delta-G solvation = 14.486017 kcal Electronic energy + Delta-G solvation = -29929.614416 eV Core-core repulsion = 26087.277759 eV Total energy + Delta-G solvation = -3842.336657 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.98687 -40.92213 -39.60498 -36.36489 -35.76992 -35.08314 -34.09802 -33.24812 -32.30262 -30.12858 -28.94379 -26.81386 -26.30676 -25.63425 -25.50969 -23.84971 -22.94609 -21.86819 -21.70622 -20.73637 -20.20799 -18.76586 -17.97893 -17.57410 -17.04606 -16.71457 -16.56654 -16.38363 -15.98633 -15.70219 -15.65708 -15.26491 -14.85656 -14.60632 -14.40354 -14.06044 -13.99492 -13.87470 -13.77418 -13.61648 -13.51247 -13.46680 -13.17854 -12.96382 -12.88320 -12.75932 -12.71930 -12.42769 -12.34206 -12.16012 -12.02974 -11.84609 -11.81193 -11.79319 -11.39051 -11.25472 -11.07191 -10.82788 -10.75513 -9.86183 -9.65411 -9.26098 -9.23923 -8.02085 -5.35136 0.43236 0.51372 1.35479 1.40160 1.47392 1.69232 2.23797 2.47885 2.87631 3.27089 3.44709 3.51651 3.67943 3.72307 3.80717 3.88550 3.92748 3.98597 4.03389 4.07548 4.14564 4.19755 4.32704 4.37991 4.53893 4.54918 4.61642 4.65307 4.71156 4.73403 4.76905 4.78585 4.84256 4.85016 4.87038 4.91373 4.99111 5.07744 5.09956 5.13040 5.15646 5.25196 5.33654 5.38721 5.45486 5.55637 5.59614 5.67101 5.72066 5.75844 5.78697 6.17888 6.22508 6.65098 7.07976 7.33872 7.83655 8.04746 9.19565 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.002385 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.506941 B =11736.110370 C =12358.066720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.129 4.129 4 C -0.131 4.131 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.077 4.077 8 C -0.099 4.099 9 C 0.514 3.486 10 O -0.578 6.578 11 N -0.702 5.702 12 C 0.152 3.848 13 H 0.099 0.901 14 C -0.169 4.169 15 C 0.177 3.823 16 H 0.070 0.930 17 N -0.730 5.730 18 C -0.230 4.230 19 H 0.053 0.947 20 C -0.066 4.066 21 N -0.985 5.985 22 Si 0.951 3.049 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.245 1.245 26 C -0.113 4.113 27 C -0.111 4.111 28 C -0.134 4.134 29 C -0.119 4.119 30 C -0.119 4.119 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.413 0.587 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.369 0.631 45 H 0.257 0.743 46 H 0.114 0.886 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.086 0.914 50 H 0.056 0.944 51 H 0.098 0.902 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.850 11.936 -20.051 31.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 C -0.147 4.147 4 C -0.149 4.149 5 C -0.093 4.093 6 C -0.171 4.171 7 C -0.077 4.077 8 C -0.138 4.138 9 C 0.302 3.698 10 O -0.457 6.457 11 N -0.354 5.354 12 C 0.046 3.954 13 H 0.117 0.883 14 C -0.211 4.211 15 C 0.067 3.933 16 H 0.088 0.912 17 N -0.372 5.372 18 C -0.362 4.362 19 H 0.071 0.929 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.778 3.222 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.169 1.169 26 C -0.115 4.115 27 C -0.149 4.149 28 C -0.171 4.171 29 C -0.157 4.157 30 C -0.137 4.137 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.251 0.749 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.205 0.795 45 H 0.066 0.934 46 H 0.133 0.867 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.105 0.895 50 H 0.075 0.925 51 H 0.117 0.883 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.974 12.444 -19.187 31.715 hybrid contribution 1.164 -0.737 -0.222 1.396 sum -20.810 11.707 -19.409 30.770 Atomic orbital electron populations 1.20796 0.89619 1.03227 1.03039 1.20200 0.97387 0.93051 0.99963 1.21275 0.94232 0.98312 1.00845 1.21238 0.94730 0.97844 1.01074 1.19967 0.96614 0.93102 0.99651 1.20816 0.90808 1.02557 1.02879 1.19354 0.93768 0.93809 1.00794 1.20753 1.03341 0.96542 0.93144 1.21039 0.76607 0.80313 0.91811 1.90715 1.55100 1.51924 1.47924 1.45818 1.56871 1.23854 1.08841 1.21790 0.94740 0.94495 0.84363 0.88335 1.24105 0.96618 0.99325 1.01023 1.21264 0.85985 0.89570 0.96468 0.91189 1.42560 1.26476 1.53754 1.14412 1.19061 1.01689 1.21086 0.94316 0.92878 1.25515 0.97331 1.01528 1.01311 1.69891 1.16062 1.43139 1.34425 0.85465 0.78853 0.77775 0.80056 1.20520 1.22474 1.16884 1.23385 0.96772 0.92586 0.98793 1.22559 1.01104 0.94988 0.96216 1.22705 0.99760 0.96327 0.98339 1.22713 0.97387 0.95692 0.99862 1.21102 0.93400 0.98441 1.00738 0.90057 0.91374 0.90964 0.84546 0.84935 0.89346 0.91558 0.92733 0.85935 0.85215 0.74916 0.90037 0.93094 0.79534 0.93430 0.86750 0.92539 0.92423 0.89500 0.92538 0.88335 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.24 0.71 -0.64 16 2 C -0.11 -1.92 5.88 -19.87 -0.12 -2.03 16 3 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 4 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 5 C -0.09 -1.94 5.88 -19.87 -0.12 -2.06 16 6 C -0.11 -2.06 9.22 71.24 0.66 -1.40 16 7 C -0.08 -1.54 4.37 -19.86 -0.09 -1.63 16 8 C -0.10 -1.52 5.15 29.10 0.15 -1.37 16 9 C 0.51 11.80 7.05 87.66 0.62 12.42 16 10 O -0.58 -18.93 15.63 -3.01 -0.05 -18.98 16 11 N -0.70 -14.40 5.25 -441.14 -2.32 -16.72 16 12 C 0.15 4.10 4.12 45.28 0.19 4.28 16 13 H 0.10 3.00 7.46 -2.39 -0.02 2.98 16 14 C -0.17 -5.53 7.69 31.23 0.24 -5.29 16 15 C 0.18 6.55 4.36 45.28 0.20 6.75 16 16 H 0.07 2.82 8.10 -2.39 -0.02 2.80 16 17 N -0.73 -32.70 5.13 -321.56 -1.65 -34.35 16 18 C -0.23 -12.99 10.45 84.03 0.88 -12.11 16 19 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 20 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 21 N -0.98 -63.16 13.97 21.65 0.30 -62.86 16 22 Si 0.95 44.39 27.74 68.60 1.90 46.30 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.24 -10.00 6.52 99.48 0.65 -9.35 16 26 C -0.11 -3.08 1.06 -52.31 -0.06 -3.13 16 27 C -0.11 -2.56 6.77 30.89 0.21 -2.35 16 28 C -0.13 -3.30 8.08 31.23 0.25 -3.05 16 29 C -0.12 -2.94 7.84 30.89 0.24 -2.70 16 30 C -0.12 -2.28 9.34 22.27 0.21 -2.07 16 31 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.80 8.09 -2.38 -0.02 0.78 16 33 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.13 2.07 8.06 -2.92 -0.02 2.05 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 38 H 0.05 1.10 6.16 -2.39 -0.01 1.09 16 39 H 0.12 1.41 6.99 -2.39 -0.02 1.39 16 40 H 0.13 1.22 8.05 -2.39 -0.02 1.20 16 41 H 0.41 6.02 7.03 -92.71 -0.65 5.37 16 42 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.37 15.58 3.78 -92.71 -0.35 15.23 16 45 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 46 H 0.11 1.77 7.03 -2.38 -0.02 1.75 16 47 H 0.06 1.50 6.42 -2.39 -0.02 1.49 16 48 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -75.42 411.59 3.13 -72.30 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -0.14 Total: 38.50 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 5.07 Total: -24.19 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -3.66 Total: -113.93 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.98 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.30 kcal Total: -75.42 3.13 -72.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717989.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.783 kcal (2) G-P(sol) polarization free energy of solvation -75.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds