Wall clock time and date at job start Wed Apr 1 2020 02:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38264 * 119.99534 * 2 1 4 4 C 1.38216 * 119.99852 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99537 * 359.80734 * 4 3 2 6 6 C 1.50708 * 119.99489 * 180.23470 * 5 4 3 7 7 C 1.38206 * 120.00362 * 0.42342 * 5 4 3 8 8 C 1.50697 * 120.00244 * 179.80750 * 7 5 4 9 9 C 1.50702 * 109.47121 * 84.72653 * 8 7 5 10 10 O 1.21283 * 119.99827 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00063 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99891 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.95019 * 26.89990 * 12 11 9 14 14 C 1.53957 * 113.66334 * 255.49630 * 12 11 9 15 15 C 1.53954 * 87.29472 * 270.26287 * 14 12 11 16 16 H 1.08993 * 113.66420 * 89.73634 * 15 14 12 17 17 N 1.46501 * 113.65933 * 220.79577 * 15 14 12 18 18 C 1.36943 * 119.99445 * 255.48968 * 17 15 14 19 19 H 1.07993 * 120.00183 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99579 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 119.99775 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47412 * 59.99731 * 22 20 18 24 24 H 1.48505 * 109.47122 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47163 * 299.99785 * 22 20 18 26 26 C 1.52904 * 113.66504 * 158.30947 * 12 11 9 27 27 C 1.52910 * 121.13709 * 323.85383 * 26 12 11 28 28 C 1.53947 * 86.78382 * 209.38040 * 27 26 12 29 29 C 1.52905 * 121.14213 * 215.29456 * 26 12 11 30 30 C 1.38213 * 120.00515 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.46647 * 270.01767 * 1 2 3 32 32 H 1.09000 * 109.47459 * 30.02231 * 1 2 3 33 33 H 1.09001 * 109.46585 * 150.02464 * 1 2 3 34 34 H 1.07992 * 120.00185 * 0.02562 * 3 2 1 35 35 H 1.07999 * 119.99997 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.46630 * 270.18980 * 6 5 4 37 37 H 1.09000 * 109.47234 * 30.18742 * 6 5 4 38 38 H 1.08991 * 109.46583 * 150.19070 * 6 5 4 39 39 H 1.09006 * 109.47238 * 324.72929 * 8 7 5 40 40 H 1.08999 * 109.47632 * 204.72520 * 8 7 5 41 41 H 0.96996 * 119.99696 * 0.02562 * 11 9 8 42 42 H 1.08998 * 113.57948 * 24.86243 * 14 12 11 43 43 H 1.09000 * 113.57875 * 155.65888 * 14 12 11 44 44 H 0.96995 * 120.00007 * 75.49526 * 17 15 14 45 45 H 0.97000 * 120.00407 * 180.02562 * 21 20 18 46 46 H 1.09003 * 113.66021 * 323.85551 * 27 26 12 47 47 H 1.09001 * 113.66716 * 94.90405 * 27 26 12 48 48 H 1.09003 * 113.57959 * 270.12744 * 28 27 26 49 49 H 1.09003 * 113.57772 * 139.33495 * 28 27 26 50 50 H 1.09004 * 113.66112 * 265.09171 * 29 26 12 51 51 H 1.09000 * 113.66196 * 36.13445 * 29 26 12 52 52 H 1.08001 * 119.99314 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 0.0051 6 6 5.7787 0.0002 0.0110 7 6 3.5807 -1.1968 0.0003 8 6 4.3342 -2.5019 0.0009 9 6 4.6930 -2.8741 1.4164 10 8 4.3683 -2.1511 2.3344 11 7 5.3747 -4.0106 1.6622 12 6 5.7229 -4.3727 3.0384 13 1 5.0324 -3.9604 3.7741 14 6 7.2050 -4.1383 3.3828 15 6 7.4692 -5.5760 2.8997 16 1 7.7008 -5.6448 1.8368 17 7 8.4159 -6.3139 3.7396 18 6 9.6992 -6.5186 3.3075 19 1 10.0133 -6.1357 2.3478 20 6 10.5961 -7.2182 4.1031 21 7 10.2130 -7.6852 5.2725 22 14 12.3467 -7.4968 3.5141 23 1 13.0093 -6.1862 3.2935 24 1 13.0978 -8.2643 4.5398 25 1 12.3248 -8.2609 2.2409 26 6 6.0038 -5.8637 3.2283 27 6 5.2136 -6.9216 2.4572 28 6 5.4548 -7.8529 3.6591 29 6 5.6094 -6.5846 4.5178 30 6 2.1982 -1.1969 0.0005 31 1 -0.3632 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3632 -0.8902 -0.5135 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1329 0.0010 36 1 6.1460 0.0021 -1.0152 37 1 6.1400 0.8893 0.5278 38 1 6.1400 -0.8906 0.5247 39 1 5.2448 -2.3960 -0.5889 40 1 3.7093 -3.2825 -0.4328 41 1 5.6346 -4.5886 0.9280 42 1 7.6810 -3.3765 2.7653 43 1 7.3879 -3.9957 4.4478 44 1 8.1338 -6.6574 4.6017 45 1 10.8398 -8.1737 5.8287 46 1 4.1654 -6.6623 2.3081 47 1 5.7037 -7.2529 1.5417 48 1 6.3700 -8.4397 3.5792 49 1 4.5865 -8.4560 3.9245 50 1 6.4159 -6.6466 5.2485 51 1 4.6726 -6.2306 4.9480 52 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078717990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:46 Heat of formation + Delta-G solvation = 29.709205 kcal Electronic energy + Delta-G solvation = -29862.182528 eV Core-core repulsion = 26020.505998 eV Total energy + Delta-G solvation = -3841.676530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.71512 -39.97799 -38.56345 -35.02299 -34.33214 -34.01861 -32.65884 -32.05052 -29.91144 -29.44473 -27.96015 -25.46587 -24.97976 -24.59419 -24.12486 -22.67279 -22.02929 -21.11144 -20.15978 -19.79028 -17.94325 -17.26210 -16.81257 -16.26550 -16.10242 -15.77438 -15.20396 -14.88283 -14.80781 -14.66265 -14.34382 -13.96719 -13.74562 -13.46822 -13.28640 -13.20738 -12.94237 -12.87544 -12.60473 -12.50227 -12.15155 -12.07812 -11.99781 -11.74289 -11.67074 -11.62242 -11.35423 -11.09170 -11.06144 -10.88320 -10.82581 -10.61104 -10.21230 -10.13747 -9.85257 -9.79713 -9.61771 -9.40007 -8.87600 -8.85050 -8.65770 -8.48634 -6.98100 -5.80923 -3.09430 1.20520 1.28450 2.72131 3.20743 3.40993 3.45972 3.46673 3.67974 4.45606 4.55552 4.60188 4.72671 4.78430 4.85932 4.90882 5.02135 5.02690 5.05210 5.10221 5.23788 5.25984 5.27589 5.33504 5.38690 5.40383 5.45442 5.50274 5.58296 5.59675 5.69391 5.79129 5.85007 5.94875 5.98287 5.99784 6.05561 6.09854 6.11270 6.20022 6.29634 6.31362 6.42247 6.45094 6.52102 6.54056 6.57010 6.67276 6.87427 6.90830 6.93761 7.08069 7.65378 7.66564 8.35538 8.37922 9.49332 10.06893 10.41677 11.41243 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.002371 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.465119 B =11804.302627 C =12900.494681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.072 4.072 6 C -0.117 4.117 7 C -0.060 4.060 8 C -0.106 4.106 9 C 0.514 3.486 10 O -0.532 6.532 11 N -0.705 5.705 12 C 0.131 3.869 13 H 0.092 0.908 14 C -0.174 4.174 15 C 0.192 3.808 16 H 0.074 0.926 17 N -0.709 5.709 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.131 4.131 29 C -0.111 4.111 30 C -0.104 4.104 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.399 0.601 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.056 0.944 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.815 12.028 -12.940 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.072 4.072 6 C -0.174 4.174 7 C -0.060 4.060 8 C -0.145 4.145 9 C 0.300 3.700 10 O -0.408 6.408 11 N -0.355 5.355 12 C 0.025 3.975 13 H 0.111 0.889 14 C -0.216 4.216 15 C 0.080 3.920 16 H 0.092 0.908 17 N -0.348 5.348 18 C -0.375 4.375 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.122 4.122 27 C -0.164 4.164 28 C -0.169 4.169 29 C -0.149 4.149 30 C -0.122 4.122 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.233 0.767 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.108 0.892 49 H 0.075 0.925 50 H 0.097 0.903 51 H 0.092 0.908 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.842 12.496 -12.329 25.030 hybrid contribution 1.088 -0.506 -0.258 1.227 sum -16.754 11.990 -12.587 24.143 Atomic orbital electron populations 1.20761 0.91350 1.02479 1.02277 1.19818 0.95908 0.93113 1.00645 1.20962 0.94147 0.97348 1.01215 1.20957 0.94142 0.97336 1.01102 1.19694 0.95948 0.92555 0.98984 1.20831 0.91317 1.03300 1.01938 1.19098 0.93275 0.93164 1.00459 1.20711 1.02091 0.96374 0.95370 1.20419 0.77758 0.80980 0.90849 1.90725 1.53406 1.50544 1.46168 1.45629 1.57071 1.23697 1.09139 1.21687 0.97350 0.95570 0.82883 0.88949 1.24261 0.94105 1.01214 1.02031 1.21272 0.86067 0.89828 0.94866 0.90838 1.42395 1.08306 1.63819 1.20248 1.19217 0.87540 1.29016 1.01703 0.91277 1.24743 0.98364 1.00897 0.96747 1.69640 1.35009 1.42056 1.11200 0.86285 0.84770 0.77716 0.77492 1.21284 1.21709 1.21286 1.23521 0.98745 0.91426 0.98472 1.22645 0.99086 0.96946 0.97674 1.22744 1.01801 0.96155 0.96178 1.22458 1.00975 0.95595 0.95827 1.20820 0.93234 0.97568 1.00551 0.91279 0.91739 0.91692 0.86345 0.86180 0.91185 0.91435 0.91431 0.87857 0.88140 0.76653 0.92417 0.89703 0.77688 0.93396 0.90969 0.91727 0.89192 0.92482 0.90265 0.90786 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.09 -0.96 5.88 -104.62 -0.62 -1.58 16 3 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 4 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 5 C -0.07 -0.82 5.88 -104.62 -0.62 -1.43 16 6 C -0.12 -1.18 9.22 36.01 0.33 -0.85 16 7 C -0.06 -0.68 4.37 -104.63 -0.46 -1.13 16 8 C -0.11 -1.03 5.15 -29.04 -0.15 -1.18 16 9 C 0.51 6.81 7.03 -10.98 -0.08 6.73 16 10 O -0.53 -9.31 15.68 5.55 0.09 -9.22 16 11 N -0.71 -8.85 5.07 -53.37 -0.27 -9.12 16 12 C 0.13 1.99 4.08 -67.48 -0.28 1.72 16 13 H 0.09 1.54 7.55 -51.93 -0.39 1.15 16 14 C -0.17 -3.09 7.68 -25.74 -0.20 -3.28 16 15 C 0.19 3.60 4.28 -67.48 -0.29 3.31 16 16 H 0.07 1.36 8.12 -51.93 -0.42 0.93 16 17 N -0.71 -16.88 5.35 -52.99 -0.28 -17.17 16 18 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.12 -1.86 0.91 -154.71 -0.14 -2.00 16 27 C -0.13 -1.72 7.43 -26.28 -0.20 -1.92 16 28 C -0.13 -1.99 8.08 -25.76 -0.21 -2.20 16 29 C -0.11 -1.76 7.45 -26.29 -0.20 -1.95 16 30 C -0.10 -1.12 9.34 -39.58 -0.37 -1.49 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.07 0.76 6.15 -51.93 -0.32 0.44 16 39 H 0.10 0.83 7.01 -51.93 -0.36 0.46 16 40 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 41 H 0.40 4.12 8.54 -40.82 -0.35 3.77 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 44 H 0.39 9.80 5.86 -40.82 -0.24 9.56 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 49 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.08 1.45 6.42 -51.93 -0.33 1.12 16 51 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 52 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 417.24 15.07 6.29 6.29 Total: -1.00 -32.04 417.24 -11.30 -43.34 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -8.71 Total: 13.60 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -4.11 Total: -17.99 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.17 Total: -52.97 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.04 -11.30 -43.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.051 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds