Wall clock time and date at job start Wed Apr 1 2020 02:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38264 * 119.99534 * 2 1 4 4 C 1.38216 * 119.99852 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99537 * 359.80734 * 4 3 2 6 6 C 1.50708 * 119.99489 * 180.23470 * 5 4 3 7 7 C 1.38206 * 120.00362 * 0.42342 * 5 4 3 8 8 C 1.50697 * 120.00244 * 179.80750 * 7 5 4 9 9 C 1.50702 * 109.47121 * 84.72653 * 8 7 5 10 10 O 1.21283 * 119.99827 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00063 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99891 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.95019 * 26.89990 * 12 11 9 14 14 C 1.53957 * 113.66334 * 255.49630 * 12 11 9 15 15 C 1.53954 * 87.29472 * 270.26287 * 14 12 11 16 16 H 1.08993 * 113.66420 * 89.73634 * 15 14 12 17 17 N 1.46501 * 113.65933 * 220.79577 * 15 14 12 18 18 C 1.36943 * 119.99445 * 255.48968 * 17 15 14 19 19 H 1.07993 * 120.00183 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99579 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 119.99775 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47412 * 59.99731 * 22 20 18 24 24 H 1.48505 * 109.47122 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47163 * 299.99785 * 22 20 18 26 26 C 1.52904 * 113.66504 * 158.30947 * 12 11 9 27 27 C 1.52910 * 121.13709 * 323.85383 * 26 12 11 28 28 C 1.53947 * 86.78382 * 209.38040 * 27 26 12 29 29 C 1.52905 * 121.14213 * 215.29456 * 26 12 11 30 30 C 1.38213 * 120.00515 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.46647 * 270.01767 * 1 2 3 32 32 H 1.09000 * 109.47459 * 30.02231 * 1 2 3 33 33 H 1.09001 * 109.46585 * 150.02464 * 1 2 3 34 34 H 1.07992 * 120.00185 * 0.02562 * 3 2 1 35 35 H 1.07999 * 119.99997 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.46630 * 270.18980 * 6 5 4 37 37 H 1.09000 * 109.47234 * 30.18742 * 6 5 4 38 38 H 1.08991 * 109.46583 * 150.19070 * 6 5 4 39 39 H 1.09006 * 109.47238 * 324.72929 * 8 7 5 40 40 H 1.08999 * 109.47632 * 204.72520 * 8 7 5 41 41 H 0.96996 * 119.99696 * 0.02562 * 11 9 8 42 42 H 1.08998 * 113.57948 * 24.86243 * 14 12 11 43 43 H 1.09000 * 113.57875 * 155.65888 * 14 12 11 44 44 H 0.96995 * 120.00007 * 75.49526 * 17 15 14 45 45 H 0.97000 * 120.00407 * 180.02562 * 21 20 18 46 46 H 1.09003 * 113.66021 * 323.85551 * 27 26 12 47 47 H 1.09001 * 113.66716 * 94.90405 * 27 26 12 48 48 H 1.09003 * 113.57959 * 270.12744 * 28 27 26 49 49 H 1.09003 * 113.57772 * 139.33495 * 28 27 26 50 50 H 1.09004 * 113.66112 * 265.09171 * 29 26 12 51 51 H 1.09000 * 113.66196 * 36.13445 * 29 26 12 52 52 H 1.08001 * 119.99314 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 0.0051 6 6 5.7787 0.0002 0.0110 7 6 3.5807 -1.1968 0.0003 8 6 4.3342 -2.5019 0.0009 9 6 4.6930 -2.8741 1.4164 10 8 4.3683 -2.1511 2.3344 11 7 5.3747 -4.0106 1.6622 12 6 5.7229 -4.3727 3.0384 13 1 5.0324 -3.9604 3.7741 14 6 7.2050 -4.1383 3.3828 15 6 7.4692 -5.5760 2.8997 16 1 7.7008 -5.6448 1.8368 17 7 8.4159 -6.3139 3.7396 18 6 9.6992 -6.5186 3.3075 19 1 10.0133 -6.1357 2.3478 20 6 10.5961 -7.2182 4.1031 21 7 10.2130 -7.6852 5.2725 22 14 12.3467 -7.4968 3.5141 23 1 13.0093 -6.1862 3.2935 24 1 13.0978 -8.2643 4.5398 25 1 12.3248 -8.2609 2.2409 26 6 6.0038 -5.8637 3.2283 27 6 5.2136 -6.9216 2.4572 28 6 5.4548 -7.8529 3.6591 29 6 5.6094 -6.5846 4.5178 30 6 2.1982 -1.1969 0.0005 31 1 -0.3632 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3632 -0.8902 -0.5135 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1329 0.0010 36 1 6.1460 0.0021 -1.0152 37 1 6.1400 0.8893 0.5278 38 1 6.1400 -0.8906 0.5247 39 1 5.2448 -2.3960 -0.5889 40 1 3.7093 -3.2825 -0.4328 41 1 5.6346 -4.5886 0.9280 42 1 7.6810 -3.3765 2.7653 43 1 7.3879 -3.9957 4.4478 44 1 8.1338 -6.6574 4.6017 45 1 10.8398 -8.1737 5.8287 46 1 4.1654 -6.6623 2.3081 47 1 5.7037 -7.2529 1.5417 48 1 6.3700 -8.4397 3.5792 49 1 4.5865 -8.4560 3.9245 50 1 6.4159 -6.6466 5.2485 51 1 4.6726 -6.2306 4.9480 52 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078717990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:45 Heat of formation + Delta-G solvation = 12.418171 kcal Electronic energy + Delta-G solvation = -29862.932323 eV Core-core repulsion = 26020.505998 eV Total energy + Delta-G solvation = -3842.426325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.95484 -40.89955 -39.59058 -36.35056 -35.74056 -35.07617 -33.86245 -33.16357 -31.68928 -30.12197 -28.83948 -26.69898 -26.44452 -25.63658 -25.48018 -23.98285 -23.11128 -22.18268 -21.31344 -20.72443 -19.59667 -18.75227 -18.01495 -17.26410 -17.00313 -16.77680 -16.60638 -16.34980 -15.77780 -15.74403 -15.62607 -15.27992 -14.99488 -14.56297 -14.15299 -14.04054 -14.02541 -13.85963 -13.60871 -13.57889 -13.41128 -13.29495 -13.16102 -12.89254 -12.84638 -12.74190 -12.69184 -12.48941 -12.34171 -12.19262 -11.92093 -11.85451 -11.80411 -11.78618 -11.27357 -11.19152 -10.89302 -10.85259 -10.65999 -9.88005 -9.65003 -9.23662 -8.94542 -7.92572 -5.20007 0.43554 0.52028 1.47583 1.49857 1.55739 1.69164 2.18667 2.57200 2.87735 3.38188 3.49802 3.68787 3.69373 3.77511 3.89485 3.94752 4.00852 4.03769 4.08524 4.14603 4.15332 4.28386 4.33641 4.38939 4.56101 4.60082 4.64378 4.67652 4.72871 4.75342 4.78753 4.84829 4.86200 4.88174 4.90766 4.92431 5.03667 5.10065 5.13516 5.14241 5.19976 5.26033 5.30071 5.39409 5.50314 5.56160 5.60344 5.64541 5.71249 5.73162 5.76638 6.18500 6.29296 6.65050 7.33938 7.36321 8.13923 8.36884 9.30359 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.002371 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.465119 B =11804.302627 C =12900.494681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.128 4.128 4 C -0.131 4.131 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.077 4.077 8 C -0.097 4.097 9 C 0.516 3.484 10 O -0.578 6.578 11 N -0.695 5.695 12 C 0.151 3.849 13 H 0.082 0.918 14 C -0.174 4.174 15 C 0.180 3.820 16 H 0.082 0.918 17 N -0.721 5.721 18 C -0.240 4.240 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.969 3.031 23 H -0.281 1.281 24 H -0.299 1.299 25 H -0.276 1.276 26 C -0.110 4.110 27 C -0.107 4.107 28 C -0.131 4.131 29 C -0.115 4.115 30 C -0.118 4.118 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.414 0.586 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.377 0.623 45 H 0.250 0.750 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.046 0.954 51 H 0.095 0.905 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.475 12.384 -15.515 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 C -0.146 4.146 4 C -0.149 4.149 5 C -0.093 4.093 6 C -0.171 4.171 7 C -0.078 4.078 8 C -0.137 4.137 9 C 0.304 3.696 10 O -0.457 6.457 11 N -0.345 5.345 12 C 0.045 3.955 13 H 0.100 0.900 14 C -0.216 4.216 15 C 0.070 3.930 16 H 0.100 0.900 17 N -0.360 5.360 18 C -0.372 4.372 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.799 3.201 23 H -0.208 1.208 24 H -0.226 1.226 25 H -0.202 1.202 26 C -0.112 4.112 27 C -0.144 4.144 28 C -0.168 4.168 29 C -0.153 4.153 30 C -0.136 4.136 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.251 0.749 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.211 0.789 45 H 0.058 0.942 46 H 0.117 0.883 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.098 0.902 50 H 0.064 0.936 51 H 0.113 0.887 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.523 12.867 -14.978 27.768 hybrid contribution 1.540 -0.512 0.544 1.712 sum -17.983 12.354 -14.433 26.160 Atomic orbital electron populations 1.20796 0.89587 1.03678 1.02610 1.20203 0.97400 0.93029 0.99991 1.21280 0.94211 0.98318 1.00785 1.21236 0.94742 0.97808 1.01101 1.19966 0.96592 0.93123 0.99601 1.20817 0.90859 1.02518 1.02886 1.19346 0.93794 0.93755 1.00865 1.20742 1.03396 0.96604 0.92930 1.21034 0.76558 0.80082 0.91878 1.90713 1.55166 1.51865 1.47921 1.45505 1.56749 1.23988 1.08300 1.21301 0.95042 0.94885 0.84314 0.90035 1.24125 0.96492 1.00342 1.00612 1.21555 0.87091 0.89803 0.94529 0.89989 1.42559 1.08415 1.64444 1.20537 1.19625 0.88711 1.27320 1.01503 0.90568 1.25512 1.02159 1.01888 0.97200 1.69804 1.35902 1.43672 1.12527 0.85275 0.80353 0.77535 0.76974 1.20782 1.22551 1.20200 1.23279 0.96492 0.92298 0.99168 1.22612 1.00190 0.94611 0.97034 1.22655 1.01240 0.95948 0.96969 1.22519 1.00816 0.96588 0.95367 1.21107 0.93376 0.98480 1.00668 0.91251 0.90422 0.90699 0.84480 0.84898 0.89330 0.91522 0.92840 0.85922 0.85140 0.74913 0.92570 0.91976 0.78945 0.94173 0.88258 0.90884 0.92462 0.90155 0.93553 0.88656 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.69 16 2 C -0.11 -1.98 5.88 -19.86 -0.12 -2.10 16 3 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 4 C -0.13 -2.62 9.70 22.27 0.22 -2.41 16 5 C -0.09 -2.01 5.88 -19.86 -0.12 -2.13 16 6 C -0.11 -2.18 9.22 71.24 0.66 -1.52 16 7 C -0.08 -1.63 4.37 -19.87 -0.09 -1.71 16 8 C -0.10 -1.64 5.15 29.10 0.15 -1.49 16 9 C 0.52 12.70 7.03 87.66 0.62 13.32 16 10 O -0.58 -19.79 15.68 -3.04 -0.05 -19.84 16 11 N -0.69 -15.84 5.07 -441.15 -2.24 -18.07 16 12 C 0.15 4.44 4.08 45.28 0.18 4.63 16 13 H 0.08 2.67 7.55 -2.39 -0.02 2.65 16 14 C -0.17 -6.20 7.68 31.23 0.24 -5.96 16 15 C 0.18 6.71 4.28 45.28 0.19 6.91 16 16 H 0.08 2.91 8.12 -2.39 -0.02 2.89 16 17 N -0.72 -35.09 5.35 -321.55 -1.72 -36.81 16 18 C -0.24 -12.95 9.98 84.03 0.84 -12.11 16 19 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -58.76 13.06 21.65 0.28 -58.47 16 22 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 C -0.11 -3.31 0.91 -52.31 -0.05 -3.36 16 27 C -0.11 -2.62 7.43 30.88 0.23 -2.39 16 28 C -0.13 -3.79 8.08 31.23 0.25 -3.54 16 29 C -0.11 -3.61 7.45 30.88 0.23 -3.38 16 30 C -0.12 -2.36 9.34 22.27 0.21 -2.15 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 33 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 34 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 38 H 0.05 1.15 6.15 -2.39 -0.01 1.14 16 39 H 0.12 1.59 7.01 -2.38 -0.02 1.57 16 40 H 0.13 1.41 8.05 -2.39 -0.02 1.39 16 41 H 0.41 7.17 8.54 -92.71 -0.79 6.38 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.38 19.85 5.86 -92.71 -0.54 19.31 16 45 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.05 1.77 6.42 -2.38 -0.02 1.75 16 51 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 52 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -71.38 417.24 2.93 -68.45 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -0.41 Total: 43.07 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 5.04 Total: -26.05 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -3.68 Total: -113.36 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.38 2.93 -68.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.870 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds