Wall clock time and date at job start Wed Apr 1 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38212 * 120.00070 * 179.76653 * 3 2 1 5 5 C 1.38259 * 119.99673 * 0.48817 * 4 3 2 6 6 C 1.50700 * 119.99834 * 179.77070 * 5 4 3 7 7 C 1.38220 * 120.00274 * 359.78638 * 5 4 3 8 8 C 1.50695 * 120.00097 * 179.97438 * 7 5 4 9 9 C 1.50692 * 109.46964 * 84.98139 * 8 7 5 10 10 O 1.21286 * 120.00445 * 359.97438 * 9 8 7 11 11 N 1.34787 * 119.99999 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99752 * 180.02562 * 11 9 8 13 13 H 1.09000 * 112.88907 * 333.15770 * 12 11 9 14 14 C 1.53950 * 113.66280 * 104.50801 * 12 11 9 15 15 C 1.53949 * 87.29336 * 139.20204 * 14 12 11 16 16 H 1.09002 * 113.66103 * 220.69326 * 15 14 12 17 17 N 1.46500 * 113.66153 * 89.74171 * 15 14 12 18 18 C 1.36937 * 120.00461 * 104.50343 * 17 15 14 19 19 H 1.07993 * 119.99945 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99772 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00350 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99624 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47081 * 89.99432 * 22 20 18 24 24 H 1.48496 * 109.46898 * 209.99404 * 22 20 18 25 25 H 1.48500 * 109.46889 * 329.99598 * 22 20 18 26 26 C 1.52904 * 86.78510 * 335.26553 * 15 14 12 27 27 C 1.52907 * 121.13773 * 150.62686 * 26 15 14 28 28 C 1.53954 * 86.78194 * 100.81116 * 27 26 15 29 29 C 1.52917 * 121.13055 * 259.18213 * 26 15 14 30 30 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 33 33 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 34 34 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 35 35 H 1.07993 * 120.00436 * 180.25908 * 4 3 2 36 36 H 1.09002 * 109.46793 * 270.02013 * 6 5 4 37 37 H 1.09001 * 109.47163 * 30.01804 * 6 5 4 38 38 H 1.09004 * 109.47290 * 150.02044 * 6 5 4 39 39 H 1.08996 * 109.47007 * 204.98213 * 8 7 5 40 40 H 1.09001 * 109.47100 * 324.98103 * 8 7 5 41 41 H 0.96993 * 119.99664 * 359.97438 * 11 9 8 42 42 H 1.08999 * 113.57843 * 253.80775 * 14 12 11 43 43 H 1.09000 * 113.57920 * 24.59504 * 14 12 11 44 44 H 0.97004 * 119.99404 * 284.49950 * 17 15 14 45 45 H 0.96994 * 120.00008 * 180.02562 * 21 20 18 46 46 H 1.08996 * 113.65962 * 215.28417 * 27 26 15 47 47 H 1.08998 * 113.66225 * 346.34022 * 27 26 15 48 48 H 1.09000 * 113.58305 * 270.13128 * 28 27 26 49 49 H 1.09007 * 113.64693 * 139.34797 * 28 27 26 50 50 H 1.09003 * 113.66084 * 13.65793 * 29 26 15 51 51 H 1.09001 * 113.66260 * 144.61980 * 29 26 15 52 52 H 1.07999 * 119.99625 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0049 5 6 4.2717 0.0000 -0.0004 6 6 5.7787 0.0000 -0.0004 7 6 3.5806 -1.1970 -0.0062 8 6 4.3341 -2.5021 -0.0126 9 6 4.6930 -2.8817 1.4009 10 8 4.3693 -2.1631 2.3227 11 7 5.3738 -4.0200 1.6408 12 6 5.7222 -4.3894 3.0150 13 1 5.8147 -3.5271 3.6752 14 6 4.8488 -5.5183 3.5917 15 6 6.1327 -6.0929 4.2173 16 1 6.2005 -7.1792 4.1570 17 7 6.4137 -5.5784 5.5599 18 6 6.1828 -6.3649 6.6569 19 1 5.7932 -7.3644 6.5323 20 6 6.4487 -5.8770 7.9290 21 7 6.9231 -4.6588 8.0808 22 14 6.1331 -6.9497 9.4254 23 1 7.3553 -7.7323 9.7401 24 1 5.7830 -6.0908 10.5851 25 1 5.0101 -7.8787 9.1405 26 6 6.8952 -5.3658 3.1093 27 6 8.3238 -4.8668 3.3289 28 6 8.7859 -6.1122 2.5507 29 6 7.4022 -6.1143 1.8760 30 6 2.1981 -1.1969 -0.0058 31 1 -0.3633 -0.0050 1.0277 32 1 -0.3633 -0.8875 -0.5181 33 1 -0.3633 0.8925 -0.5096 34 1 1.6583 2.1326 0.0004 35 1 4.1205 2.1326 0.0091 36 1 6.1420 0.0050 -1.0280 37 1 6.1420 0.8875 0.5178 38 1 6.1421 -0.8925 0.5092 39 1 3.7090 -3.2803 -0.4503 40 1 5.2446 -2.3930 -0.6019 41 1 5.6324 -4.5949 0.9036 42 1 4.1214 -5.1745 4.3271 43 1 4.4091 -6.1620 2.8298 44 1 6.7634 -4.6805 5.6718 45 1 7.1091 -4.3181 8.9697 46 1 8.5420 -3.9275 2.8207 47 1 8.6309 -4.8655 4.3747 48 1 8.9635 -6.9812 3.1842 49 1 9.6070 -5.9169 1.8609 50 1 6.9729 -7.1096 1.7613 51 1 7.3599 -5.5261 0.9593 52 1 1.6581 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078717991.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:49 Heat of formation + Delta-G solvation = 10.550289 kcal Electronic energy + Delta-G solvation = -29960.107939 eV Core-core repulsion = 26117.600617 eV Total energy + Delta-G solvation = -3842.507323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.93223 -40.90953 -39.59161 -36.49333 -35.60046 -35.09530 -34.05692 -33.21297 -31.56289 -30.13780 -28.91796 -26.74944 -26.25631 -25.64654 -25.48176 -24.31100 -23.07425 -21.82351 -21.67033 -20.74678 -19.48406 -18.77948 -18.02126 -17.42538 -17.03928 -16.71987 -16.65036 -16.23965 -15.85365 -15.79071 -15.59836 -15.27064 -14.93015 -14.53062 -14.35700 -14.07971 -13.94564 -13.92766 -13.65767 -13.56874 -13.46510 -13.27735 -13.10840 -12.88001 -12.82570 -12.73613 -12.66911 -12.60044 -12.35945 -12.19645 -12.00710 -11.82144 -11.80359 -11.79416 -11.29032 -11.22763 -10.92029 -10.82301 -10.68252 -9.84207 -9.66371 -9.25146 -9.01985 -7.96384 -5.25500 0.41975 0.50088 1.44991 1.47205 1.55480 1.70385 2.26491 2.53289 2.87465 3.35236 3.42806 3.56385 3.66957 3.79038 3.87825 3.97823 4.00735 4.03952 4.08021 4.13974 4.20273 4.24785 4.32193 4.37578 4.53957 4.58814 4.63698 4.65601 4.70800 4.78708 4.80657 4.82035 4.85667 4.86196 4.90171 4.91535 5.07043 5.11402 5.12988 5.15560 5.24170 5.26391 5.34065 5.37854 5.47677 5.52245 5.54390 5.61723 5.70334 5.74399 5.77045 6.17044 6.25533 6.68257 7.30641 7.38884 8.07148 8.29235 9.27077 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.002607 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.500606 B =10738.233414 C =11840.093657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C -0.129 4.129 4 C -0.131 4.131 5 C -0.093 4.093 6 C -0.113 4.113 7 C -0.079 4.079 8 C -0.094 4.094 9 C 0.508 3.492 10 O -0.585 6.585 11 N -0.699 5.699 12 C 0.150 3.850 13 H 0.062 0.938 14 C -0.172 4.172 15 C 0.178 3.822 16 H 0.071 0.929 17 N -0.716 5.716 18 C -0.240 4.240 19 H 0.080 0.920 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.284 1.284 24 H -0.299 1.299 25 H -0.268 1.268 26 C -0.110 4.110 27 C -0.135 4.135 28 C -0.125 4.125 29 C -0.093 4.093 30 C -0.122 4.122 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.416 0.584 42 H 0.031 0.969 43 H 0.103 0.897 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.110 0.890 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.816 4.518 -27.047 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.147 4.147 4 C -0.149 4.149 5 C -0.093 4.093 6 C -0.169 4.169 7 C -0.079 4.079 8 C -0.133 4.133 9 C 0.296 3.704 10 O -0.464 6.464 11 N -0.352 5.352 12 C 0.045 3.955 13 H 0.081 0.919 14 C -0.214 4.214 15 C 0.067 3.933 16 H 0.089 0.911 17 N -0.353 5.353 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.211 1.211 24 H -0.226 1.226 25 H -0.193 1.193 26 C -0.113 4.113 27 C -0.173 4.173 28 C -0.162 4.162 29 C -0.131 4.131 30 C -0.140 4.140 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.255 0.745 42 H 0.050 0.950 43 H 0.122 0.878 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.057 0.943 48 H 0.086 0.914 49 H 0.105 0.895 50 H 0.104 0.896 51 H 0.129 0.871 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.088 4.857 -26.271 27.197 hybrid contribution 0.009 0.077 1.645 1.647 sum -5.078 4.934 -24.626 25.624 Atomic orbital electron populations 1.20799 0.89678 1.03748 1.02475 1.20206 0.97396 0.93112 1.00072 1.21283 0.94332 0.98241 1.00841 1.21256 0.94691 0.97935 1.01043 1.20004 0.96866 0.92993 0.99488 1.20818 0.90507 1.02520 1.03092 1.19389 0.93729 0.94046 1.00744 1.20745 1.03532 0.96348 0.92707 1.21227 0.76917 0.80352 0.91951 1.90753 1.54747 1.52939 1.48011 1.45826 1.56869 1.23733 1.08749 1.21813 0.95894 0.94772 0.83065 0.91937 1.24165 0.98558 0.98731 0.99943 1.20910 0.92880 0.96165 0.83379 0.91125 1.42254 1.76554 1.15903 1.00609 1.19659 1.34570 0.96916 0.86025 0.90239 1.25596 1.02784 0.98006 1.00525 1.69839 1.52496 1.17745 1.22030 0.85129 0.77993 0.77614 0.78968 1.21116 1.22603 1.19307 1.23382 0.92602 0.96772 0.98515 1.22681 0.95815 0.98875 0.99947 1.22687 0.97750 0.96950 0.98846 1.22570 0.94925 1.00632 0.94945 1.21119 0.93620 0.98394 1.00840 0.91571 0.90665 0.90225 0.84469 0.84744 0.88815 0.91648 0.92747 0.85240 0.85197 0.74501 0.95025 0.87844 0.79631 0.94117 0.89943 0.94292 0.91374 0.89489 0.89569 0.87141 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.01 71.24 0.71 -1.01 16 2 C -0.11 -2.31 5.88 -19.86 -0.12 -2.43 16 3 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 4 C -0.13 -2.87 9.70 22.27 0.22 -2.66 16 5 C -0.09 -2.16 5.88 -19.86 -0.12 -2.28 16 6 C -0.11 -2.17 9.22 71.24 0.66 -1.51 16 7 C -0.08 -1.81 4.37 -19.87 -0.09 -1.90 16 8 C -0.09 -1.67 5.15 29.10 0.15 -1.52 16 9 C 0.51 13.93 7.05 87.65 0.62 14.54 16 10 O -0.59 -23.38 15.67 -3.05 -0.05 -23.43 16 11 N -0.70 -16.69 5.29 -441.14 -2.33 -19.03 16 12 C 0.15 5.01 4.01 45.28 0.18 5.19 16 13 H 0.06 2.75 7.54 -2.39 -0.02 2.74 16 14 C -0.17 -6.15 7.68 31.23 0.24 -5.91 16 15 C 0.18 6.93 4.35 45.28 0.20 7.13 16 16 H 0.07 2.67 8.12 -2.39 -0.02 2.65 16 17 N -0.72 -36.89 4.91 -321.57 -1.58 -38.47 16 18 C -0.24 -13.53 9.98 84.03 0.84 -12.69 16 19 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 20 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 21 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 22 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 C -0.11 -3.33 0.91 -52.31 -0.05 -3.37 16 27 C -0.14 -4.24 7.59 30.89 0.23 -4.01 16 28 C -0.12 -2.94 8.08 31.23 0.25 -2.69 16 29 C -0.09 -1.83 7.16 30.89 0.22 -1.61 16 30 C -0.12 -2.77 9.34 22.27 0.21 -2.56 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.08 0.97 8.08 -2.38 -0.02 0.95 16 34 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 38 H 0.05 1.16 6.16 -2.38 -0.01 1.15 16 39 H 0.13 1.52 8.05 -2.39 -0.02 1.50 16 40 H 0.13 1.55 6.99 -2.39 -0.02 1.53 16 41 H 0.42 6.25 6.93 -92.71 -0.64 5.61 16 42 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.37 21.13 7.47 -92.71 -0.69 20.44 16 45 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.04 1.56 7.50 -2.39 -0.02 1.54 16 48 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 50 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.11 1.46 6.96 -2.39 -0.02 1.45 16 52 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -78.57 416.79 2.98 -75.60 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: -0.41 Total: 43.11 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 5.04 Total: -25.83 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -3.63 Total: -118.66 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -78.57 2.98 -75.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717991.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.148 kcal (2) G-P(sol) polarization free energy of solvation -78.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds