Wall clock time and date at job start Wed Apr 1 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38212 * 120.00070 * 179.76653 * 3 2 1 5 5 C 1.38263 * 119.99580 * 0.50837 * 4 3 2 6 6 C 1.50703 * 119.99552 * 179.72474 * 5 4 3 7 7 C 1.38217 * 120.00274 * 359.74597 * 5 4 3 8 8 C 1.50700 * 119.99985 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.46778 * 85.02528 * 8 7 5 10 10 O 1.21281 * 120.00273 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99974 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99960 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.88794 * 336.34068 * 12 11 9 14 14 C 1.53947 * 113.66445 * 107.81350 * 12 11 9 15 15 C 1.53952 * 87.29667 * 89.73507 * 14 12 11 16 16 H 1.08998 * 113.66074 * 139.20766 * 15 14 12 17 17 N 1.46498 * 113.74707 * 270.24843 * 15 14 12 18 18 C 1.36930 * 120.00160 * 252.22770 * 17 15 14 19 19 H 1.07996 * 120.00282 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00277 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99527 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00506 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47174 * 90.00055 * 22 20 18 24 24 H 1.48501 * 109.47042 * 210.00552 * 22 20 18 25 25 H 1.48502 * 109.47003 * 330.00009 * 22 20 18 26 26 C 1.52912 * 86.78254 * 24.73494 * 15 14 12 27 27 C 1.52906 * 121.13585 * 100.81531 * 26 15 14 28 28 C 1.53954 * 86.77820 * 100.82294 * 27 26 15 29 29 C 1.52897 * 121.13516 * 209.38107 * 26 15 14 30 30 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 33 33 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 34 34 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.00520 * 180.23414 * 4 3 2 36 36 H 1.09001 * 109.46994 * 270.01925 * 6 5 4 37 37 H 1.09000 * 109.47076 * 30.02352 * 6 5 4 38 38 H 1.09003 * 109.47063 * 150.02658 * 6 5 4 39 39 H 1.08997 * 109.46854 * 205.02554 * 8 7 5 40 40 H 1.08997 * 109.47196 * 325.02563 * 8 7 5 41 41 H 0.97001 * 119.99331 * 359.97438 * 11 9 8 42 42 H 1.08997 * 113.58196 * 204.33771 * 14 12 11 43 43 H 1.09003 * 113.58145 * 335.13238 * 14 12 11 44 44 H 0.96999 * 119.99493 * 72.23202 * 17 15 14 45 45 H 0.97006 * 119.99906 * 179.97438 * 21 20 18 46 46 H 1.08996 * 113.66473 * 215.29232 * 27 26 15 47 47 H 1.08999 * 113.66342 * 346.35276 * 27 26 15 48 48 H 1.09000 * 113.57900 * 270.12950 * 28 27 26 49 49 H 1.08997 * 113.65118 * 139.35504 * 28 27 26 50 50 H 1.08995 * 113.66675 * 13.65058 * 29 26 15 51 51 H 1.09004 * 113.66528 * 144.61505 * 29 26 15 52 52 H 1.07999 * 119.99625 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0049 5 6 4.2717 0.0000 -0.0009 6 6 5.7787 0.0000 -0.0018 7 6 3.5806 -1.1970 -0.0062 8 6 4.3341 -2.5021 -0.0130 9 6 4.6929 -2.8823 1.4003 10 8 4.3683 -2.1645 2.3224 11 7 5.3737 -4.0206 1.6398 12 6 5.7220 -4.3905 3.0138 13 1 5.7604 -3.5338 3.6867 14 6 4.9030 -5.5732 3.5619 15 6 5.9970 -6.4978 2.9977 16 1 6.2540 -7.3254 3.6588 17 7 5.7541 -6.9253 1.6177 18 6 5.3819 -8.2169 1.3565 19 1 5.2679 -8.9206 2.1677 20 6 5.1523 -8.6222 0.0488 21 7 5.2928 -7.7650 -0.9400 22 14 4.6440 -10.3840 -0.3075 23 1 3.1629 -10.4874 -0.2782 24 1 5.1415 -10.7810 -1.6492 25 1 5.2235 -11.2842 0.7216 26 6 6.9448 -5.3034 3.1124 27 6 7.9289 -5.1839 4.2766 28 6 9.0087 -5.6883 3.3020 29 6 8.1312 -5.1414 2.1615 30 6 2.1981 -1.1969 -0.0058 31 1 -0.3633 -0.0050 1.0277 32 1 -0.3633 -0.8875 -0.5181 33 1 -0.3633 0.8925 -0.5096 34 1 1.6583 2.1326 0.0004 35 1 4.1205 2.1326 0.0087 36 1 6.1414 0.0049 -1.0297 37 1 6.1424 0.8875 0.5161 38 1 6.1424 -0.8925 0.5074 39 1 3.7091 -3.2802 -0.4511 40 1 5.2446 -2.3929 -0.6022 41 1 5.6324 -4.5953 0.9024 42 1 4.8360 -5.5903 4.6497 43 1 3.9351 -5.6957 3.0758 44 1 5.8569 -6.2934 0.8890 45 1 5.1327 -8.0482 -1.8539 46 1 8.0870 -4.1591 4.6125 47 1 7.7229 -5.8727 5.0959 48 1 9.1129 -6.7732 3.2902 49 1 9.9639 -5.1730 3.4029 50 1 8.0869 -5.7961 1.2912 51 1 8.3451 -4.1047 1.9015 52 1 1.6581 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078717992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:54 Heat of formation + Delta-G solvation = 31.708463 kcal Electronic energy + Delta-G solvation = -30517.863485 eV Core-core repulsion = 26676.273649 eV Total energy + Delta-G solvation = -3841.589835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.64929 -39.82401 -38.33891 -35.24688 -34.15132 -33.63480 -32.48804 -31.95430 -29.91373 -29.28325 -27.80742 -25.44351 -24.83387 -24.50948 -24.14405 -22.79470 -21.99271 -20.76257 -20.10948 -19.64680 -18.07357 -17.05395 -16.63556 -16.06680 -15.90960 -15.61394 -15.16277 -14.82796 -14.62807 -14.46340 -14.29552 -13.95869 -13.68648 -13.27701 -13.11037 -12.96572 -12.88099 -12.75829 -12.69507 -12.50589 -12.12972 -11.94891 -11.92800 -11.75509 -11.50565 -11.45738 -11.34598 -10.95390 -10.90549 -10.88813 -10.84288 -10.67664 -10.22951 -10.07769 -9.83238 -9.72858 -9.47783 -9.38970 -8.91941 -8.67165 -8.43817 -8.30447 -7.09799 -5.90794 -3.19022 1.39768 1.47547 2.98715 3.37018 3.42291 3.43788 3.46381 3.87630 4.46859 4.71302 4.78174 4.80381 4.90363 5.00206 5.02408 5.04885 5.17604 5.18809 5.22700 5.30870 5.35653 5.43466 5.46159 5.54939 5.57119 5.63651 5.66888 5.67777 5.77761 5.78755 5.85009 5.91140 5.92894 5.99692 6.00983 6.03666 6.16437 6.17445 6.27017 6.29580 6.36938 6.50035 6.52178 6.62690 6.64038 6.69679 6.74064 6.80647 6.96013 7.10125 7.14251 7.62320 7.96166 8.28922 8.62687 9.39827 9.94087 10.28136 11.31952 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009962 B = 0.003331 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.902451 B = 8404.446884 C =10103.616265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.075 4.075 6 C -0.115 4.115 7 C -0.052 4.052 8 C -0.109 4.109 9 C 0.519 3.481 10 O -0.544 6.544 11 N -0.699 5.699 12 C 0.139 3.861 13 H 0.089 0.911 14 C -0.186 4.186 15 C 0.191 3.809 16 H 0.065 0.935 17 N -0.699 5.699 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.129 4.129 27 C -0.107 4.107 28 C -0.134 4.134 29 C -0.125 4.125 30 C -0.103 4.103 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.407 0.593 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.380 0.620 45 H 0.257 0.743 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.059 0.941 50 H 0.079 0.921 51 H 0.071 0.929 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.061 15.011 2.667 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.075 4.075 6 C -0.172 4.172 7 C -0.053 4.053 8 C -0.148 4.148 9 C 0.305 3.695 10 O -0.421 6.421 11 N -0.351 5.351 12 C 0.033 3.967 13 H 0.107 0.893 14 C -0.228 4.228 15 C 0.079 3.921 16 H 0.083 0.917 17 N -0.339 5.339 18 C -0.373 4.373 19 H 0.091 0.909 20 C -0.205 4.205 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.132 4.132 27 C -0.145 4.145 28 C -0.172 4.172 29 C -0.163 4.163 30 C -0.121 4.121 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.245 0.755 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.215 0.785 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.078 0.922 50 H 0.098 0.902 51 H 0.090 0.910 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.209 15.298 3.266 15.645 hybrid contribution -0.262 -1.050 -0.829 1.363 sum -0.471 14.248 2.438 14.463 Atomic orbital electron populations 1.20762 0.91413 1.02477 1.02208 1.19812 0.95878 0.93092 1.00621 1.20922 0.94127 0.97236 1.01692 1.20908 0.94119 0.97173 1.01476 1.19668 0.95845 0.92558 0.99431 1.20809 0.91516 1.02948 1.01914 1.19144 0.93296 0.93206 0.99639 1.20722 1.02288 0.96353 0.95466 1.20377 0.77582 0.80742 0.90794 1.90676 1.53611 1.51937 1.45899 1.45766 1.56760 1.23367 1.09216 1.21601 0.95498 0.96216 0.83365 0.89268 1.24270 1.00736 0.98032 0.99743 1.20870 0.90795 0.92118 0.88313 0.91670 1.42100 1.80759 1.10381 1.00619 1.19272 1.38517 0.87232 0.92245 0.90904 1.24714 1.02219 0.98046 0.95547 1.69617 1.55692 1.33940 0.98892 0.86167 0.78245 0.84310 0.77314 1.21688 1.21745 1.20727 1.23561 0.92572 0.99075 0.97959 1.22510 0.95226 1.00960 0.95797 1.22747 0.96576 1.01021 0.96826 1.22554 0.95293 1.00557 0.97874 1.20891 0.93382 0.97687 1.00140 0.91345 0.91597 0.91828 0.86477 0.86352 0.91213 0.91680 0.91514 0.87579 0.87904 0.75482 0.90574 0.91036 0.78475 0.93347 0.90389 0.91417 0.90106 0.92242 0.90210 0.91045 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.09 -1.18 5.88 -104.62 -0.62 -1.80 16 3 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 4 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 5 C -0.07 -1.01 5.88 -104.62 -0.62 -1.62 16 6 C -0.12 -1.33 9.22 36.01 0.33 -1.00 16 7 C -0.05 -0.76 4.37 -104.62 -0.46 -1.22 16 8 C -0.11 -1.55 5.15 -29.04 -0.15 -1.70 16 9 C 0.52 8.79 7.05 -10.99 -0.08 8.71 16 10 O -0.54 -10.76 15.63 5.56 0.09 -10.67 16 11 N -0.70 -11.83 4.93 -53.37 -0.26 -12.09 16 12 C 0.14 2.34 4.12 -67.48 -0.28 2.06 16 13 H 0.09 1.54 7.46 -51.93 -0.39 1.16 16 14 C -0.19 -3.31 7.69 -25.75 -0.20 -3.51 16 15 C 0.19 3.62 4.36 -67.48 -0.29 3.33 16 16 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 17 N -0.70 -15.96 4.74 -52.99 -0.25 -16.22 16 18 C -0.24 -6.29 9.97 -15.06 -0.15 -6.44 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -25.98 13.06 55.49 0.72 -25.25 16 22 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C -0.13 -2.04 0.78 -154.72 -0.12 -2.16 16 27 C -0.11 -1.42 7.84 -26.28 -0.21 -1.62 16 28 C -0.13 -1.82 8.08 -25.75 -0.21 -2.03 16 29 C -0.13 -1.92 7.27 -26.29 -0.19 -2.12 16 30 C -0.10 -1.45 9.34 -39.58 -0.37 -1.82 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.06 0.51 8.08 -51.93 -0.42 0.10 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.07 0.84 6.16 -51.93 -0.32 0.52 16 39 H 0.11 1.47 8.05 -51.93 -0.42 1.06 16 40 H 0.10 1.27 6.99 -51.93 -0.36 0.91 16 41 H 0.41 7.21 6.14 -40.82 -0.25 6.96 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.38 8.86 5.14 -40.82 -0.21 8.65 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 51 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 52 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 414.62 15.07 6.25 6.25 Total: -1.00 -29.93 414.62 -11.22 -41.15 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -8.64 Total: 18.07 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -4.10 Total: -17.65 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.21 Total: -53.56 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.93 -11.22 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.857 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds