Wall clock time and date at job start Wed Apr 1 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38212 * 120.00070 * 179.76653 * 3 2 1 5 5 C 1.38263 * 119.99580 * 0.50837 * 4 3 2 6 6 C 1.50703 * 119.99552 * 179.72474 * 5 4 3 7 7 C 1.38217 * 120.00274 * 359.74597 * 5 4 3 8 8 C 1.50700 * 119.99985 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.46778 * 85.02528 * 8 7 5 10 10 O 1.21281 * 120.00273 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99974 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99960 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.88794 * 336.34068 * 12 11 9 14 14 C 1.53947 * 113.66445 * 107.81350 * 12 11 9 15 15 C 1.53952 * 87.29667 * 89.73507 * 14 12 11 16 16 H 1.08998 * 113.66074 * 139.20766 * 15 14 12 17 17 N 1.46498 * 113.74707 * 270.24843 * 15 14 12 18 18 C 1.36930 * 120.00160 * 252.22770 * 17 15 14 19 19 H 1.07996 * 120.00282 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00277 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99527 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00506 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47174 * 90.00055 * 22 20 18 24 24 H 1.48501 * 109.47042 * 210.00552 * 22 20 18 25 25 H 1.48502 * 109.47003 * 330.00009 * 22 20 18 26 26 C 1.52912 * 86.78254 * 24.73494 * 15 14 12 27 27 C 1.52906 * 121.13585 * 100.81531 * 26 15 14 28 28 C 1.53954 * 86.77820 * 100.82294 * 27 26 15 29 29 C 1.52897 * 121.13516 * 209.38107 * 26 15 14 30 30 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 33 33 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 34 34 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.00520 * 180.23414 * 4 3 2 36 36 H 1.09001 * 109.46994 * 270.01925 * 6 5 4 37 37 H 1.09000 * 109.47076 * 30.02352 * 6 5 4 38 38 H 1.09003 * 109.47063 * 150.02658 * 6 5 4 39 39 H 1.08997 * 109.46854 * 205.02554 * 8 7 5 40 40 H 1.08997 * 109.47196 * 325.02563 * 8 7 5 41 41 H 0.97001 * 119.99331 * 359.97438 * 11 9 8 42 42 H 1.08997 * 113.58196 * 204.33771 * 14 12 11 43 43 H 1.09003 * 113.58145 * 335.13238 * 14 12 11 44 44 H 0.96999 * 119.99493 * 72.23202 * 17 15 14 45 45 H 0.97006 * 119.99906 * 179.97438 * 21 20 18 46 46 H 1.08996 * 113.66473 * 215.29232 * 27 26 15 47 47 H 1.08999 * 113.66342 * 346.35276 * 27 26 15 48 48 H 1.09000 * 113.57900 * 270.12950 * 28 27 26 49 49 H 1.08997 * 113.65118 * 139.35504 * 28 27 26 50 50 H 1.08995 * 113.66675 * 13.65058 * 29 26 15 51 51 H 1.09004 * 113.66528 * 144.61505 * 29 26 15 52 52 H 1.07999 * 119.99625 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0049 5 6 4.2717 0.0000 -0.0009 6 6 5.7787 0.0000 -0.0018 7 6 3.5806 -1.1970 -0.0062 8 6 4.3341 -2.5021 -0.0130 9 6 4.6929 -2.8823 1.4003 10 8 4.3683 -2.1645 2.3224 11 7 5.3737 -4.0206 1.6398 12 6 5.7220 -4.3905 3.0138 13 1 5.7604 -3.5338 3.6867 14 6 4.9030 -5.5732 3.5619 15 6 5.9970 -6.4978 2.9977 16 1 6.2540 -7.3254 3.6588 17 7 5.7541 -6.9253 1.6177 18 6 5.3819 -8.2169 1.3565 19 1 5.2679 -8.9206 2.1677 20 6 5.1523 -8.6222 0.0488 21 7 5.2928 -7.7650 -0.9400 22 14 4.6440 -10.3840 -0.3075 23 1 3.1629 -10.4874 -0.2782 24 1 5.1415 -10.7810 -1.6492 25 1 5.2235 -11.2842 0.7216 26 6 6.9448 -5.3034 3.1124 27 6 7.9289 -5.1839 4.2766 28 6 9.0087 -5.6883 3.3020 29 6 8.1312 -5.1414 2.1615 30 6 2.1981 -1.1969 -0.0058 31 1 -0.3633 -0.0050 1.0277 32 1 -0.3633 -0.8875 -0.5181 33 1 -0.3633 0.8925 -0.5096 34 1 1.6583 2.1326 0.0004 35 1 4.1205 2.1326 0.0087 36 1 6.1414 0.0049 -1.0297 37 1 6.1424 0.8875 0.5161 38 1 6.1424 -0.8925 0.5074 39 1 3.7091 -3.2802 -0.4511 40 1 5.2446 -2.3929 -0.6022 41 1 5.6324 -4.5953 0.9024 42 1 4.8360 -5.5903 4.6497 43 1 3.9351 -5.6957 3.0758 44 1 5.8569 -6.2934 0.8890 45 1 5.1327 -8.0482 -1.8539 46 1 8.0870 -4.1591 4.6125 47 1 7.7229 -5.8727 5.0959 48 1 9.1129 -6.7732 3.2902 49 1 9.9639 -5.1730 3.4029 50 1 8.0869 -5.7961 1.2912 51 1 8.3451 -4.1047 1.9015 52 1 1.6581 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078717992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:53 Heat of formation + Delta-G solvation = 17.307878 kcal Electronic energy + Delta-G solvation = -30518.487941 eV Core-core repulsion = 26676.273649 eV Total energy + Delta-G solvation = -3842.214292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.00156 -40.91509 -39.58596 -36.64886 -35.39158 -35.09634 -33.86398 -33.16673 -31.71620 -30.13524 -28.94023 -26.76657 -26.23814 -25.63876 -25.45541 -24.28211 -23.10459 -22.02156 -21.36175 -20.84278 -19.64841 -18.71762 -18.01196 -17.21471 -17.01701 -16.72354 -16.60744 -16.21226 -15.99930 -15.81722 -15.51764 -15.32540 -14.87480 -14.75739 -14.38900 -14.07919 -13.96192 -13.92806 -13.63844 -13.55075 -13.43687 -13.27076 -13.09539 -12.93712 -12.82634 -12.74845 -12.66967 -12.53466 -12.36276 -12.17216 -11.92325 -11.83724 -11.82954 -11.80723 -11.29238 -11.18124 -10.90509 -10.80776 -10.65093 -9.84118 -9.67879 -9.25958 -8.99499 -7.95380 -5.22094 0.41583 0.49071 1.48434 1.49401 1.56843 1.62486 2.17947 2.55831 2.84827 3.37516 3.42589 3.66082 3.69006 3.80410 3.85382 3.93539 3.99941 4.02717 4.05061 4.13399 4.20534 4.28251 4.30035 4.35007 4.52072 4.57838 4.61081 4.67117 4.71862 4.78702 4.81203 4.81844 4.85191 4.88044 4.89881 4.92224 5.00087 5.11049 5.12798 5.13884 5.20597 5.23176 5.26920 5.37639 5.53096 5.53904 5.60264 5.62918 5.69128 5.72795 5.75064 6.16119 6.28177 6.56830 7.24146 7.35560 8.07935 8.32693 9.27403 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009962 B = 0.003331 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.902451 B = 8404.446884 C =10103.616265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.124 4.124 4 C -0.124 4.124 5 C -0.091 4.091 6 C -0.113 4.113 7 C -0.074 4.074 8 C -0.103 4.103 9 C 0.520 3.480 10 O -0.572 6.572 11 N -0.699 5.699 12 C 0.139 3.861 13 H 0.091 0.909 14 C -0.180 4.180 15 C 0.178 3.822 16 H 0.063 0.937 17 N -0.708 5.708 18 C -0.243 4.243 19 H 0.073 0.927 20 C -0.063 4.063 21 N -0.961 5.961 22 Si 0.966 3.034 23 H -0.292 1.292 24 H -0.296 1.296 25 H -0.273 1.273 26 C -0.120 4.120 27 C -0.094 4.094 28 C -0.127 4.127 29 C -0.126 4.126 30 C -0.128 4.128 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.403 0.597 42 H 0.100 0.900 43 H 0.041 0.959 44 H 0.375 0.625 45 H 0.252 0.748 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.048 0.952 51 H 0.084 0.916 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 16.472 3.642 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.091 4.091 6 C -0.169 4.169 7 C -0.074 4.074 8 C -0.142 4.142 9 C 0.308 3.692 10 O -0.452 6.452 11 N -0.350 5.350 12 C 0.034 3.966 13 H 0.109 0.891 14 C -0.221 4.221 15 C 0.068 3.932 16 H 0.081 0.919 17 N -0.347 5.347 18 C -0.375 4.375 19 H 0.091 0.909 20 C -0.256 4.256 21 N -0.611 5.611 22 Si 0.796 3.204 23 H -0.220 1.220 24 H -0.222 1.222 25 H -0.198 1.198 26 C -0.122 4.122 27 C -0.132 4.132 28 C -0.164 4.164 29 C -0.163 4.163 30 C -0.146 4.146 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.240 0.760 42 H 0.118 0.882 43 H 0.060 0.940 44 H 0.210 0.790 45 H 0.061 0.939 46 H 0.116 0.884 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.102 0.898 50 H 0.067 0.933 51 H 0.102 0.898 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.459 16.755 4.283 17.300 hybrid contribution -0.494 -1.466 -1.075 1.884 sum -0.035 15.289 3.208 15.622 Atomic orbital electron populations 1.20801 0.89611 1.03577 1.02689 1.20172 0.97392 0.92858 0.99967 1.21307 0.94328 0.98049 1.00537 1.21275 0.94598 0.97727 1.00555 1.19970 0.96907 0.92682 0.99544 1.20818 0.90419 1.02754 1.02926 1.19262 0.93623 0.93511 1.01015 1.20699 1.03032 0.96623 0.93861 1.20780 0.76701 0.80169 0.91546 1.90646 1.54778 1.52781 1.47010 1.45829 1.56643 1.23281 1.09221 1.21621 0.95789 0.95940 0.83260 0.89124 1.24213 0.98767 0.98221 1.00946 1.21048 0.92610 0.93192 0.86392 0.91896 1.42168 1.80916 1.09422 1.02201 1.19584 1.37124 0.88502 0.92256 0.90869 1.25374 1.03380 1.01246 0.95645 1.69742 1.57286 1.35261 0.98795 0.85258 0.77483 0.80817 0.76866 1.21963 1.22241 1.19765 1.23436 0.92335 0.96232 1.00202 1.22541 0.93170 1.02475 0.95032 1.22705 0.97627 1.00603 0.95503 1.22551 0.95813 1.00773 0.97207 1.21061 0.93664 0.98379 1.01465 0.91044 0.91498 0.89795 0.83709 0.83850 0.89578 0.90409 0.93068 0.87915 0.86249 0.75970 0.88170 0.94024 0.79015 0.93926 0.88358 0.90243 0.91133 0.89806 0.93290 0.89778 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.10 -2.54 5.88 -19.86 -0.12 -2.66 16 3 C -0.12 -2.72 9.70 22.27 0.22 -2.50 16 4 C -0.12 -2.81 9.70 22.27 0.22 -2.59 16 5 C -0.09 -2.38 5.88 -19.86 -0.12 -2.50 16 6 C -0.11 -2.47 9.22 71.24 0.66 -1.81 16 7 C -0.07 -2.16 4.37 -19.87 -0.09 -2.25 16 8 C -0.10 -3.02 5.15 29.10 0.15 -2.87 16 9 C 0.52 18.04 7.05 87.65 0.62 18.66 16 10 O -0.57 -22.99 15.63 -3.03 -0.05 -23.03 16 11 N -0.70 -24.15 4.93 -441.16 -2.18 -26.33 16 12 C 0.14 4.64 4.12 45.28 0.19 4.83 16 13 H 0.09 3.04 7.46 -2.39 -0.02 3.02 16 14 C -0.18 -6.39 7.69 31.23 0.24 -6.15 16 15 C 0.18 6.74 4.36 45.28 0.20 6.94 16 16 H 0.06 2.39 8.10 -2.39 -0.02 2.37 16 17 N -0.71 -33.02 4.74 -321.57 -1.52 -34.54 16 18 C -0.24 -12.81 9.97 84.04 0.84 -11.98 16 19 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 20 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 21 N -0.96 -54.76 13.06 21.65 0.28 -54.48 16 22 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 26 C -0.12 -3.66 0.78 -52.32 -0.04 -3.70 16 27 C -0.09 -2.23 7.84 30.89 0.24 -1.99 16 28 C -0.13 -3.15 8.08 31.23 0.25 -2.90 16 29 C -0.13 -3.75 7.27 30.88 0.22 -3.53 16 30 C -0.13 -3.68 9.34 22.27 0.21 -3.47 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 33 H 0.08 1.18 8.08 -2.38 -0.02 1.16 16 34 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 38 H 0.05 1.27 6.16 -2.39 -0.01 1.25 16 39 H 0.10 3.04 8.05 -2.39 -0.02 3.02 16 40 H 0.12 3.02 6.99 -2.39 -0.02 3.00 16 41 H 0.40 14.79 6.14 -92.71 -0.57 14.22 16 42 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.38 18.08 5.14 -92.71 -0.48 17.61 16 45 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 46 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.05 1.78 7.58 -2.39 -0.02 1.76 16 51 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 52 H 0.11 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -65.17 414.62 3.50 -61.67 By element: Atomic # 1 Polarization: 54.93 SS G_CDS: -0.13 Total: 54.81 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 5.06 Total: -24.77 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -3.42 Total: -115.35 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.17 3.50 -61.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078717992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.979 kcal (2) G-P(sol) polarization free energy of solvation -65.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds