Wall clock time and date at job start Wed Apr 1 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47043 * 2 1 4 4 C 1.38244 * 119.99812 * 89.99909 * 3 2 1 5 5 C 1.38233 * 119.99579 * 180.02562 * 4 3 2 6 6 C 1.38231 * 120.00440 * 359.95389 * 5 4 3 7 7 C 1.50698 * 120.00057 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47492 * 89.99877 * 7 6 5 9 9 O 1.21287 * 119.99714 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00239 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00356 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.94396 * 23.59819 * 11 10 8 13 13 C 1.53954 * 113.66582 * 252.19513 * 11 10 8 14 14 C 1.53955 * 87.29005 * 270.26254 * 13 11 10 15 15 H 1.09000 * 113.65666 * 220.79483 * 14 13 11 16 16 N 1.46500 * 113.74622 * 89.75112 * 14 13 11 17 17 C 1.36933 * 120.00041 * 107.76938 * 16 14 13 18 18 H 1.08002 * 119.99832 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00034 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00233 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00027 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46956 * 90.00062 * 21 19 17 23 23 H 1.48502 * 109.47124 * 210.00161 * 21 19 17 24 24 H 1.48506 * 109.46922 * 330.00288 * 21 19 17 25 25 C 1.52906 * 113.66234 * 155.00127 * 11 10 8 26 26 C 1.52906 * 121.14442 * 323.85524 * 25 11 10 27 27 C 1.53952 * 86.88366 * 209.42220 * 26 25 11 28 28 C 1.53102 * 121.20422 * 215.33098 * 25 11 10 29 29 C 1.38238 * 119.99964 * 0.27290 * 6 5 4 30 30 C 1.38233 * 120.00164 * 270.01760 * 3 2 1 31 31 H 1.09009 * 109.47040 * 60.00057 * 1 2 3 32 32 H 1.09002 * 109.46871 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47101 * 299.99911 * 1 2 3 34 34 H 1.09003 * 109.47290 * 239.99805 * 2 1 3 35 35 H 1.09002 * 109.47376 * 119.99883 * 2 1 3 36 36 H 1.08001 * 119.99739 * 359.97438 * 4 3 2 37 37 H 1.08003 * 119.99342 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.47029 * 329.99803 * 7 6 5 39 39 H 1.09001 * 109.46836 * 209.99975 * 7 6 5 40 40 H 0.97008 * 120.00070 * 0.02562 * 10 8 7 41 41 H 1.08994 * 113.57830 * 155.65907 * 13 11 10 42 42 H 1.08999 * 113.58081 * 24.86049 * 13 11 10 43 43 H 0.97001 * 119.99742 * 287.76284 * 16 14 13 44 44 H 0.97002 * 120.00260 * 179.97438 * 20 19 17 45 45 H 1.09002 * 113.66421 * 94.90439 * 26 25 11 46 46 H 1.08998 * 113.66230 * 323.94207 * 26 25 11 47 47 H 1.09007 * 113.57685 * 139.28894 * 27 26 25 48 48 H 1.08994 * 113.58377 * 270.08447 * 27 26 25 49 49 H 1.08998 * 113.57982 * 36.05296 * 28 25 11 50 50 H 1.08999 * 113.80409 * 265.03356 * 28 25 11 51 51 H 1.07991 * 120.00034 * 179.72807 * 29 6 5 52 52 H 1.07999 * 119.99806 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7229 3.3759 1.1972 6 6 2.9537 4.0275 0.0001 7 6 3.4560 5.4483 0.0002 8 6 4.9630 5.4484 0.0007 9 8 5.5695 4.3980 0.0006 10 7 5.6368 6.6156 0.0003 11 6 7.1018 6.6157 0.0015 12 1 7.5271 5.6956 -0.3993 13 6 7.7187 7.0480 1.3441 14 6 7.6833 8.4922 0.8120 15 1 8.5733 9.0712 1.0587 16 7 6.4388 9.2027 1.1164 17 6 6.4307 10.1967 2.0582 18 1 7.3416 10.4565 2.5770 19 6 5.2516 10.8702 2.3463 20 7 5.2439 11.8259 3.2512 21 14 3.6762 10.4213 1.4484 22 1 2.9623 9.3595 2.2022 23 1 2.8082 11.6215 1.3416 24 1 4.0059 9.9261 0.0877 25 6 7.7158 7.8846 -0.5909 26 6 7.0661 8.5983 -1.7769 27 6 8.4821 9.0598 -2.1670 28 6 9.0133 7.8340 -1.4020 29 6 2.7189 3.3774 -1.1971 30 6 2.2623 2.0726 -1.1971 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0822 1.5634 2.1325 37 1 2.9025 3.8852 2.1326 38 1 3.0923 5.9622 0.8899 39 1 3.0930 5.9620 -0.8900 40 1 5.1518 7.4557 0.0001 41 1 8.7273 6.6666 1.5035 42 1 7.0629 6.8821 2.1988 43 1 5.6207 8.9692 0.6506 44 1 4.4200 12.2969 3.4522 45 1 6.4043 9.4145 -1.4872 46 1 6.6121 7.9207 -2.4999 47 1 8.6733 9.0211 -3.2394 48 1 8.7695 10.0112 -1.7194 49 1 9.1072 6.9403 -2.0190 50 1 9.9080 8.0391 -0.8142 51 1 2.8950 3.8879 -2.1323 52 1 2.0817 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078733657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:24 Heat of formation + Delta-G solvation = 36.262658 kcal Electronic energy + Delta-G solvation = -30059.686888 eV Core-core repulsion = 26218.294538 eV Total energy + Delta-G solvation = -3841.392351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.79210 -39.79682 -38.56201 -35.43183 -34.73343 -33.77489 -32.44124 -31.30371 -30.97199 -30.43956 -27.44289 -25.56671 -24.76703 -24.23456 -23.49497 -22.79949 -22.24822 -20.89238 -20.36709 -20.08730 -18.61763 -17.22538 -16.87171 -16.38411 -15.96773 -15.76989 -15.25768 -15.17071 -14.86306 -14.61941 -14.53024 -13.95596 -13.89114 -13.77926 -13.46517 -13.39880 -12.98291 -12.82354 -12.69594 -12.28062 -12.22066 -12.13849 -11.96595 -11.88460 -11.82680 -11.49052 -11.37798 -11.10816 -11.04059 -10.96590 -10.92721 -10.78434 -10.38279 -10.12951 -9.89255 -9.79722 -9.62436 -9.49967 -8.98152 -8.93641 -8.64040 -8.56246 -7.41361 -5.88912 -3.25831 1.25474 1.39075 2.78981 3.17951 3.21322 3.26271 3.33917 3.77235 4.44228 4.52380 4.58619 4.64519 4.71049 4.81306 4.88586 4.90800 4.94821 5.02660 5.05893 5.11487 5.18339 5.24737 5.30531 5.31986 5.39109 5.47878 5.50619 5.53495 5.57056 5.63114 5.73595 5.78611 5.87050 5.88625 5.89627 5.91692 6.01196 6.03116 6.08151 6.13406 6.24143 6.32808 6.35634 6.49703 6.53948 6.56677 6.57561 6.67487 6.80112 6.94267 6.96366 7.70789 7.87734 8.30223 8.40578 9.05753 9.77725 9.95982 11.29152 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.002992 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.871954 B = 9355.702183 C =10829.996023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.062 4.062 7 C -0.110 4.110 8 C 0.518 3.482 9 O -0.537 6.537 10 N -0.704 5.704 11 C 0.136 3.864 12 H 0.094 0.906 13 C -0.183 4.183 14 C 0.197 3.803 15 H 0.075 0.925 16 N -0.723 5.723 17 C -0.246 4.246 18 H 0.094 0.906 19 C 0.008 3.992 20 N -0.928 5.928 21 Si 0.874 3.126 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.134 4.134 28 C -0.105 4.105 29 C -0.103 4.103 30 C -0.118 4.118 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.399 0.601 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.355 0.645 44 H 0.261 0.739 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 -17.952 -10.674 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.063 4.063 7 C -0.150 4.150 8 C 0.304 3.696 9 O -0.414 6.414 10 N -0.355 5.355 11 C 0.031 3.969 12 H 0.112 0.888 13 C -0.225 4.225 14 C 0.085 3.915 15 H 0.093 0.907 16 N -0.364 5.364 17 C -0.375 4.375 18 H 0.112 0.888 19 C -0.188 4.188 20 N -0.575 5.575 21 Si 0.704 3.296 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.205 1.205 25 C -0.134 4.134 26 C -0.166 4.166 27 C -0.171 4.171 28 C -0.143 4.143 29 C -0.121 4.121 30 C -0.136 4.136 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.235 0.765 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.189 0.811 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.102 0.898 49 H 0.097 0.903 50 H 0.089 0.911 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.841 -18.483 -10.470 21.587 hybrid contribution -1.452 0.291 -0.482 1.557 sum -5.293 -18.193 -10.952 21.885 Atomic orbital electron populations 1.21749 0.94825 1.01534 1.02241 1.20528 0.96062 0.92832 1.02733 1.19854 0.99483 0.96092 0.93267 1.20946 1.00326 0.94734 0.97452 1.21001 0.98488 0.94865 0.97533 1.19239 0.98884 0.94547 0.93609 1.20745 0.92962 0.95741 1.05556 1.20421 0.89446 0.83777 0.75981 1.90692 1.70179 1.31117 1.49403 1.45774 1.06936 1.08397 1.74443 1.21680 0.79368 0.98025 0.97836 0.88841 1.24230 1.00468 1.00525 0.97228 1.20825 0.90635 0.90740 0.89305 0.90716 1.42467 1.05108 1.41904 1.46924 1.19088 0.97103 1.08805 1.12520 0.88812 1.24661 0.97241 0.98149 0.98745 1.69676 1.27096 1.25740 1.35032 0.86726 0.85226 0.78211 0.79428 1.20723 1.21317 1.20465 1.23625 0.97547 0.96293 0.95910 1.22589 0.96989 1.00114 0.96912 1.22754 0.96690 0.98366 0.99328 1.22530 0.95764 0.98369 0.97637 1.20936 0.98974 0.94871 0.97293 1.20915 1.00577 0.94726 0.97388 0.92596 0.92532 0.92537 0.91175 0.91130 0.86242 0.86116 0.87758 0.88007 0.76482 0.90035 0.90812 0.81056 0.92880 0.90717 0.90889 0.92066 0.89845 0.90272 0.91106 0.86334 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.09 -0.94 5.13 -104.62 -0.54 -1.48 16 4 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 5 C -0.10 -1.30 9.70 -39.59 -0.38 -1.68 16 6 C -0.06 -0.82 4.37 -104.63 -0.46 -1.28 16 7 C -0.11 -1.42 5.83 -29.04 -0.17 -1.59 16 8 C 0.52 8.20 7.82 -10.99 -0.09 8.11 16 9 O -0.54 -10.09 15.63 5.55 0.09 -10.00 16 10 N -0.70 -11.15 4.93 -53.37 -0.26 -11.42 16 11 C 0.14 2.16 4.13 -67.48 -0.28 1.88 16 12 H 0.09 1.51 7.46 -51.93 -0.39 1.13 16 13 C -0.18 -3.09 7.69 -25.74 -0.20 -3.28 16 14 C 0.20 3.58 4.36 -67.48 -0.29 3.28 16 15 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 16 N -0.72 -15.72 4.54 -52.99 -0.24 -15.96 16 17 C -0.25 -6.52 10.45 -15.06 -0.16 -6.68 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -28.04 13.97 55.49 0.78 -27.26 16 21 Si 0.87 20.47 27.73 -169.99 -4.71 15.76 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -5.90 6.52 56.52 0.37 -5.54 16 25 C -0.13 -1.97 0.79 -154.61 -0.12 -2.09 16 26 C -0.13 -1.86 7.26 -26.28 -0.19 -2.05 16 27 C -0.13 -1.72 8.09 -25.74 -0.21 -1.93 16 28 C -0.10 -1.31 7.85 -26.18 -0.21 -1.52 16 29 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 30 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 31 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 39 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 40 H 0.40 6.43 6.14 -40.82 -0.25 6.18 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.36 7.44 3.00 -40.82 -0.12 7.31 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 48 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 52 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 416.23 15.07 6.27 6.27 Total: -1.00 -31.34 416.23 -11.19 -42.53 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -8.76 Total: 16.84 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -4.34 Total: -16.76 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.27 Total: -54.64 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.71 Total: 15.76 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.34 -11.19 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.792 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds