Wall clock time and date at job start Wed Apr 1 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47043 * 2 1 4 4 C 1.38244 * 119.99812 * 89.99909 * 3 2 1 5 5 C 1.38233 * 119.99579 * 180.02562 * 4 3 2 6 6 C 1.38231 * 120.00440 * 359.95389 * 5 4 3 7 7 C 1.50698 * 120.00057 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47492 * 89.99877 * 7 6 5 9 9 O 1.21287 * 119.99714 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00239 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00356 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.94396 * 23.59819 * 11 10 8 13 13 C 1.53954 * 113.66582 * 252.19513 * 11 10 8 14 14 C 1.53955 * 87.29005 * 270.26254 * 13 11 10 15 15 H 1.09000 * 113.65666 * 220.79483 * 14 13 11 16 16 N 1.46500 * 113.74622 * 89.75112 * 14 13 11 17 17 C 1.36933 * 120.00041 * 107.76938 * 16 14 13 18 18 H 1.08002 * 119.99832 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00034 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00233 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00027 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46956 * 90.00062 * 21 19 17 23 23 H 1.48502 * 109.47124 * 210.00161 * 21 19 17 24 24 H 1.48506 * 109.46922 * 330.00288 * 21 19 17 25 25 C 1.52906 * 113.66234 * 155.00127 * 11 10 8 26 26 C 1.52906 * 121.14442 * 323.85524 * 25 11 10 27 27 C 1.53952 * 86.88366 * 209.42220 * 26 25 11 28 28 C 1.53102 * 121.20422 * 215.33098 * 25 11 10 29 29 C 1.38238 * 119.99964 * 0.27290 * 6 5 4 30 30 C 1.38233 * 120.00164 * 270.01760 * 3 2 1 31 31 H 1.09009 * 109.47040 * 60.00057 * 1 2 3 32 32 H 1.09002 * 109.46871 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47101 * 299.99911 * 1 2 3 34 34 H 1.09003 * 109.47290 * 239.99805 * 2 1 3 35 35 H 1.09002 * 109.47376 * 119.99883 * 2 1 3 36 36 H 1.08001 * 119.99739 * 359.97438 * 4 3 2 37 37 H 1.08003 * 119.99342 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.47029 * 329.99803 * 7 6 5 39 39 H 1.09001 * 109.46836 * 209.99975 * 7 6 5 40 40 H 0.97008 * 120.00070 * 0.02562 * 10 8 7 41 41 H 1.08994 * 113.57830 * 155.65907 * 13 11 10 42 42 H 1.08999 * 113.58081 * 24.86049 * 13 11 10 43 43 H 0.97001 * 119.99742 * 287.76284 * 16 14 13 44 44 H 0.97002 * 120.00260 * 179.97438 * 20 19 17 45 45 H 1.09002 * 113.66421 * 94.90439 * 26 25 11 46 46 H 1.08998 * 113.66230 * 323.94207 * 26 25 11 47 47 H 1.09007 * 113.57685 * 139.28894 * 27 26 25 48 48 H 1.08994 * 113.58377 * 270.08447 * 27 26 25 49 49 H 1.08998 * 113.57982 * 36.05296 * 28 25 11 50 50 H 1.08999 * 113.80409 * 265.03356 * 28 25 11 51 51 H 1.07991 * 120.00034 * 179.72807 * 29 6 5 52 52 H 1.07999 * 119.99806 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7229 3.3759 1.1972 6 6 2.9537 4.0275 0.0001 7 6 3.4560 5.4483 0.0002 8 6 4.9630 5.4484 0.0007 9 8 5.5695 4.3980 0.0006 10 7 5.6368 6.6156 0.0003 11 6 7.1018 6.6157 0.0015 12 1 7.5271 5.6956 -0.3993 13 6 7.7187 7.0480 1.3441 14 6 7.6833 8.4922 0.8120 15 1 8.5733 9.0712 1.0587 16 7 6.4388 9.2027 1.1164 17 6 6.4307 10.1967 2.0582 18 1 7.3416 10.4565 2.5770 19 6 5.2516 10.8702 2.3463 20 7 5.2439 11.8259 3.2512 21 14 3.6762 10.4213 1.4484 22 1 2.9623 9.3595 2.2022 23 1 2.8082 11.6215 1.3416 24 1 4.0059 9.9261 0.0877 25 6 7.7158 7.8846 -0.5909 26 6 7.0661 8.5983 -1.7769 27 6 8.4821 9.0598 -2.1670 28 6 9.0133 7.8340 -1.4020 29 6 2.7189 3.3774 -1.1971 30 6 2.2623 2.0726 -1.1971 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0822 1.5634 2.1325 37 1 2.9025 3.8852 2.1326 38 1 3.0923 5.9622 0.8899 39 1 3.0930 5.9620 -0.8900 40 1 5.1518 7.4557 0.0001 41 1 8.7273 6.6666 1.5035 42 1 7.0629 6.8821 2.1988 43 1 5.6207 8.9692 0.6506 44 1 4.4200 12.2969 3.4522 45 1 6.4043 9.4145 -1.4872 46 1 6.6121 7.9207 -2.4999 47 1 8.6733 9.0211 -3.2394 48 1 8.7695 10.0112 -1.7194 49 1 9.1072 6.9403 -2.0190 50 1 9.9080 8.0391 -0.8142 51 1 2.8950 3.8879 -2.1323 52 1 2.0817 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078733657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:20 Heat of formation + Delta-G solvation = 20.129474 kcal Electronic energy + Delta-G solvation = -30060.386476 eV Core-core repulsion = 26218.294538 eV Total energy + Delta-G solvation = -3842.091938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -42.06836 -40.78186 -39.67013 -36.76285 -35.60866 -35.39680 -33.93043 -32.58472 -31.90831 -31.82936 -28.35740 -26.79556 -26.26288 -25.48234 -24.49218 -23.66170 -23.64198 -21.99510 -21.50132 -21.26968 -20.24292 -18.81469 -18.09638 -17.41017 -16.93240 -16.77654 -16.64899 -16.41495 -16.04424 -15.92910 -15.75728 -15.34207 -14.93050 -14.63368 -14.57485 -14.54052 -14.24236 -13.94992 -13.78138 -13.75326 -13.56717 -13.16463 -13.02386 -12.99206 -12.88631 -12.73358 -12.58328 -12.53626 -12.14026 -12.08621 -11.95655 -11.85840 -11.72813 -11.66320 -11.36139 -11.22676 -10.96022 -10.85679 -10.73626 -9.92979 -9.81340 -9.43797 -9.32987 -8.03476 -5.38137 0.37260 0.51128 1.29949 1.37748 1.44825 1.57292 2.09086 2.45763 2.84895 3.25486 3.28049 3.55187 3.63297 3.73491 3.85159 3.87524 3.93250 3.94088 3.99484 4.07694 4.12552 4.15219 4.17277 4.42889 4.47623 4.54400 4.55898 4.58284 4.62846 4.72380 4.74074 4.75748 4.85209 4.90339 4.95429 5.04131 5.07636 5.08259 5.12651 5.13664 5.16377 5.20726 5.21403 5.38156 5.49613 5.53578 5.58731 5.60923 5.66474 5.72081 5.78656 6.11603 6.20425 6.46634 7.04177 7.17436 7.78915 7.97766 9.17767 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.002992 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.871954 B = 9355.702183 C =10829.996023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.128 4.128 5 C -0.122 4.122 6 C -0.081 4.081 7 C -0.107 4.107 8 C 0.518 3.482 9 O -0.569 6.569 10 N -0.704 5.704 11 C 0.141 3.859 12 H 0.097 0.903 13 C -0.178 4.178 14 C 0.179 3.821 15 H 0.063 0.937 16 N -0.723 5.723 17 C -0.230 4.230 18 H 0.057 0.943 19 C -0.062 4.062 20 N -0.982 5.982 21 Si 0.938 3.062 22 H -0.272 1.272 23 H -0.296 1.296 24 H -0.243 1.243 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.130 4.130 28 C -0.094 4.094 29 C -0.113 4.113 30 C -0.125 4.125 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.398 0.602 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.362 0.638 44 H 0.258 0.742 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.069 0.931 49 H 0.101 0.899 50 H 0.077 0.923 51 H 0.132 0.868 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 -20.297 -13.520 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.082 4.082 7 C -0.147 4.147 8 C 0.306 3.694 9 O -0.448 6.448 10 N -0.355 5.355 11 C 0.035 3.965 12 H 0.115 0.885 13 C -0.220 4.220 14 C 0.069 3.931 15 H 0.081 0.919 16 N -0.365 5.365 17 C -0.360 4.360 18 H 0.075 0.925 19 C -0.253 4.253 20 N -0.632 5.632 21 Si 0.765 3.235 22 H -0.197 1.197 23 H -0.223 1.223 24 H -0.167 1.167 25 C -0.123 4.123 26 C -0.167 4.167 27 C -0.167 4.167 28 C -0.132 4.132 29 C -0.131 4.131 30 C -0.143 4.143 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.234 0.766 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.197 0.803 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.119 0.881 50 H 0.096 0.904 51 H 0.150 0.850 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.513 -20.871 -13.354 25.185 hybrid contribution -1.111 0.976 0.465 1.550 sum -5.623 -19.895 -12.889 24.363 Atomic orbital electron populations 1.21727 0.93991 1.02442 1.01904 1.20583 0.96688 0.91239 1.03535 1.20208 0.98589 0.97300 0.92924 1.21198 1.00245 0.94498 0.98606 1.21172 0.99446 0.95724 0.97631 1.19370 0.99842 0.94871 0.94111 1.20791 0.90602 0.96270 1.07002 1.20919 0.90610 0.83064 0.74814 1.90671 1.71104 1.32114 1.50894 1.45824 1.06964 1.08456 1.74279 1.21639 0.79595 0.98448 0.96772 0.88532 1.24178 1.01349 0.99411 0.97015 1.21036 0.88756 0.90894 0.92424 0.91866 1.42321 1.06794 1.41264 1.46131 1.19001 0.95654 1.09065 1.12321 0.92459 1.25480 1.01196 0.98490 1.00169 1.69875 1.27926 1.27801 1.37597 0.85663 0.80113 0.77777 0.79972 1.19733 1.22278 1.16674 1.23466 0.99700 0.94806 0.94334 1.22633 0.97574 0.99632 0.96832 1.22722 0.95306 0.97834 1.00837 1.22578 0.94489 0.99095 0.97067 1.21190 0.98952 0.95488 0.97492 1.21244 0.99979 0.94567 0.98461 0.92723 0.91017 0.93096 0.90143 0.90590 0.84896 0.86416 0.87253 0.85451 0.76568 0.87957 0.93435 0.80296 0.93353 0.92973 0.89108 0.89651 0.91214 0.88066 0.90401 0.85024 0.84200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.03 16 2 C -0.08 -1.18 6.06 29.85 0.18 -1.00 16 3 C -0.09 -1.80 5.13 -19.86 -0.10 -1.90 16 4 C -0.13 -2.83 9.70 22.27 0.22 -2.61 16 5 C -0.12 -3.08 9.70 22.27 0.22 -2.87 16 6 C -0.08 -2.05 4.37 -19.87 -0.09 -2.14 16 7 C -0.11 -2.57 5.83 29.10 0.17 -2.40 16 8 C 0.52 15.65 7.82 87.66 0.69 16.34 16 9 O -0.57 -20.78 15.63 -3.05 -0.05 -20.83 16 10 N -0.70 -21.13 4.93 -441.16 -2.18 -23.30 16 11 C 0.14 4.21 4.13 45.28 0.19 4.40 16 12 H 0.10 2.90 7.46 -2.39 -0.02 2.89 16 13 C -0.18 -5.91 7.69 31.23 0.24 -5.67 16 14 C 0.18 6.46 4.36 45.29 0.20 6.65 16 15 H 0.06 2.41 8.10 -2.39 -0.02 2.39 16 16 N -0.72 -31.42 4.54 -321.55 -1.46 -32.88 16 17 C -0.23 -12.55 10.45 84.03 0.88 -11.67 16 18 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 19 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 20 N -0.98 -61.56 13.97 21.65 0.30 -61.26 16 21 Si 0.94 42.24 27.73 68.60 1.90 44.14 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.24 -9.35 6.52 99.48 0.65 -8.70 16 25 C -0.12 -3.38 0.79 -52.25 -0.04 -3.42 16 26 C -0.13 -3.40 7.26 30.88 0.22 -3.18 16 27 C -0.13 -2.95 8.09 31.23 0.25 -2.70 16 28 C -0.09 -2.06 7.85 30.95 0.24 -1.81 16 29 C -0.11 -2.55 9.70 22.27 0.22 -2.34 16 30 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 35 H 0.08 0.99 8.09 -2.39 -0.02 0.98 16 36 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.11 2.50 8.09 -2.39 -0.02 2.48 16 39 H 0.13 2.34 8.08 -2.39 -0.02 2.32 16 40 H 0.40 12.02 6.14 -92.70 -0.57 11.45 16 41 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.36 14.72 3.00 -92.71 -0.28 14.44 16 44 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 45 H 0.05 1.62 7.58 -2.39 -0.02 1.61 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 48 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.13 2.49 8.06 -2.92 -0.02 2.47 16 52 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -70.25 416.23 3.59 -66.66 By element: Atomic # 1 Polarization: 50.16 SS G_CDS: 0.00 Total: 50.16 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 5.07 Total: -22.69 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -3.33 Total: -117.44 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.90 Total: 44.14 kcal Total: -70.25 3.59 -66.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.789 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds