Wall clock time and date at job start Wed Apr 1 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38238 * 119.99492 * 0.48004 * 5 4 3 7 7 C 1.50706 * 119.99437 * 179.77082 * 6 5 4 8 8 C 1.50701 * 109.46887 * 270.02388 * 7 6 5 9 9 O 1.21279 * 120.00251 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99795 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00236 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.88229 * 26.83628 * 11 10 8 13 13 C 1.53944 * 113.66073 * 255.49330 * 11 10 8 14 14 C 1.53953 * 87.29545 * 270.25893 * 13 11 10 15 15 H 1.08990 * 113.66006 * 89.73873 * 14 13 11 16 16 N 1.46496 * 113.66130 * 220.70001 * 14 13 11 17 17 C 1.36931 * 120.00420 * 255.49205 * 16 14 13 18 18 H 1.08002 * 119.99857 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00431 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99663 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00262 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47235 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47247 * 119.99589 * 21 19 17 24 24 H 1.48493 * 109.47544 * 240.00227 * 21 19 17 25 25 C 1.52907 * 113.66413 * 158.30303 * 11 10 8 26 26 C 1.52905 * 121.14371 * 323.84897 * 25 11 10 27 27 C 1.53945 * 86.78506 * 209.37698 * 26 25 11 28 28 C 1.52912 * 121.13899 * 215.28628 * 25 11 10 29 29 C 1.38225 * 120.00505 * 359.79428 * 6 5 4 30 30 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 34 34 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 35 35 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 36 36 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 37 37 H 1.07993 * 120.00120 * 180.25541 * 5 4 3 38 38 H 1.09002 * 109.47512 * 30.02407 * 7 6 5 39 39 H 1.09001 * 109.46797 * 150.02415 * 7 6 5 40 40 H 0.97003 * 119.99960 * 359.97438 * 10 8 7 41 41 H 1.08996 * 113.58179 * 24.86716 * 13 11 10 42 42 H 1.09009 * 113.58066 * 155.57699 * 13 11 10 43 43 H 0.97011 * 119.99793 * 75.50110 * 16 14 13 44 44 H 0.97005 * 119.99790 * 179.97438 * 20 19 17 45 45 H 1.08999 * 113.66475 * 323.85229 * 26 25 11 46 46 H 1.09005 * 113.65806 * 94.90251 * 26 25 11 47 47 H 1.09004 * 113.58028 * 270.13339 * 27 26 25 48 48 H 1.09001 * 113.57982 * 139.33813 * 27 26 25 49 49 H 1.09003 * 113.66374 * 265.10102 * 28 25 11 50 50 H 1.08996 * 113.66259 * 36.15545 * 28 25 11 51 51 H 1.07998 * 120.00220 * 179.97438 * 29 6 5 52 52 H 1.07998 * 120.00407 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4563 5.4482 -0.0001 8 6 4.9634 5.4482 -0.0002 9 8 5.5698 4.3980 0.0003 10 7 5.6372 6.6155 0.0003 11 6 7.1022 6.6157 -0.0004 12 1 7.5259 5.7199 -0.4545 13 6 7.7205 6.9681 1.3647 14 6 7.6847 8.4412 0.9187 15 1 6.7585 8.9541 1.1774 16 7 8.8802 9.1990 1.2961 17 6 8.8284 10.0850 2.3389 18 1 7.9063 10.2248 2.8834 19 6 9.9611 10.8035 2.6962 20 7 11.0848 10.6334 2.0323 21 14 9.8907 12.0116 4.1191 22 1 8.5224 12.0173 4.6963 23 1 10.8657 11.6048 5.1627 24 1 10.2278 13.3726 3.6302 25 6 7.7155 7.9173 -0.5176 26 6 7.0645 8.6997 -1.6587 27 6 8.4808 9.1830 -2.0197 28 6 9.0111 7.9130 -1.3299 29 6 2.7238 3.3757 1.1971 30 6 2.2627 2.0725 1.1971 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 2.0926 1.5598 -2.1325 37 1 2.9044 3.8845 -2.1325 38 1 3.0930 5.9620 -0.8901 39 1 3.0930 5.9620 0.8899 40 1 5.1521 7.4555 0.0003 41 1 7.0658 6.7519 2.2088 42 1 8.7288 6.5768 1.5007 43 1 9.7086 9.0732 0.8072 44 1 11.8763 11.1358 2.2817 45 1 6.6110 8.0658 -2.4207 46 1 6.4029 9.4973 -1.3205 47 1 8.7685 10.1055 -1.5154 48 1 8.6725 9.2088 -3.0924 49 1 9.9047 8.0821 -0.7291 50 1 9.1047 7.0581 -1.9995 51 1 2.9038 3.8848 2.1324 52 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078733658.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:28 Heat of formation + Delta-G solvation = 28.580454 kcal Electronic energy + Delta-G solvation = -29261.037562 eV Core-core repulsion = 25419.312086 eV Total energy + Delta-G solvation = -3841.725476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -40.66804 -39.83791 -38.62182 -35.09599 -34.73900 -34.02287 -32.38833 -31.33952 -31.05059 -29.81835 -27.43358 -25.46523 -24.69442 -24.12767 -23.56084 -22.88300 -22.15368 -21.12413 -20.44616 -19.92037 -17.97411 -17.29613 -16.81572 -16.42380 -16.04970 -15.79276 -15.30485 -15.10082 -14.80066 -14.75705 -14.23897 -13.99895 -13.92878 -13.75303 -13.47612 -13.41458 -13.05182 -12.68154 -12.55069 -12.27430 -12.18078 -12.00202 -11.90270 -11.74388 -11.66066 -11.44169 -11.35044 -11.04941 -11.00232 -10.91008 -10.82659 -10.61415 -10.15936 -10.13187 -9.85189 -9.79884 -9.61590 -9.40397 -9.01395 -8.86357 -8.66346 -8.63653 -6.98036 -5.81391 -3.09728 1.17372 1.31197 2.72448 3.20692 3.40154 3.46115 3.48172 3.70876 4.44130 4.55318 4.57374 4.62202 4.78023 4.81384 4.86878 4.92433 5.03019 5.05654 5.09998 5.12161 5.24185 5.25757 5.27461 5.27657 5.37000 5.44427 5.46684 5.58257 5.66541 5.69260 5.81626 5.85407 5.93736 5.95115 5.95610 5.99676 6.05508 6.11067 6.19844 6.27724 6.29537 6.42281 6.46448 6.47557 6.52466 6.56934 6.67523 6.87231 6.88192 6.93609 7.07970 7.65750 7.67225 8.35522 8.37434 9.49069 10.06660 10.41417 11.40900 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.002043 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.012942 B =13703.998051 C =14596.326443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.104 4.104 8 C 0.514 3.486 9 O -0.535 6.535 10 N -0.705 5.705 11 C 0.131 3.869 12 H 0.092 0.908 13 C -0.174 4.174 14 C 0.192 3.808 15 H 0.074 0.926 16 N -0.709 5.709 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.132 4.132 28 C -0.111 4.111 29 C -0.101 4.101 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.400 0.600 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.387 0.613 44 H 0.255 0.745 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.120 0.880 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.350 -15.057 -8.342 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.144 4.144 8 C 0.300 3.700 9 O -0.411 6.411 10 N -0.355 5.355 11 C 0.025 3.975 12 H 0.110 0.890 13 C -0.216 4.216 14 C 0.079 3.921 15 H 0.092 0.908 16 N -0.348 5.348 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.121 4.121 26 C -0.164 4.164 27 C -0.169 4.169 28 C -0.149 4.149 29 C -0.119 4.119 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.234 0.766 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.223 0.777 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.138 0.862 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.922 -15.668 -8.180 26.633 hybrid contribution 0.197 1.082 0.716 1.313 sum -19.725 -14.586 -7.464 25.642 Atomic orbital electron populations 1.21744 0.94803 1.01579 1.02190 1.20540 0.96077 0.92830 1.02814 1.19861 0.99340 0.96096 0.93271 1.20935 1.00452 0.94766 0.97421 1.20943 0.98887 0.94870 0.97333 1.19255 0.99073 0.94748 0.93569 1.20695 0.92857 0.95599 1.05244 1.20457 0.89417 0.83896 0.76276 1.90721 1.70164 1.31237 1.48948 1.45630 1.06938 1.08209 1.74738 1.21686 0.78854 0.98290 0.98660 0.88953 1.24259 1.00629 1.01310 0.95433 1.21276 0.91936 0.89806 0.89064 0.90823 1.42405 1.08183 1.46717 1.37470 1.19311 0.96121 1.14762 1.07154 0.91156 1.24745 0.95853 1.00530 0.99682 1.69665 1.00773 1.44940 1.42479 0.86138 0.77219 0.80916 0.82017 1.20588 1.21887 1.21890 1.23513 0.97481 0.94973 0.96134 1.22645 0.96905 0.99163 0.97642 1.22747 0.95968 0.98841 0.99348 1.22462 0.96959 0.97674 0.97786 1.20973 0.98626 0.94895 0.97442 1.20951 1.00316 0.94779 0.97462 0.92590 0.92507 0.92571 0.91098 0.91125 0.86311 0.86309 0.88054 0.87952 0.76634 0.92415 0.89700 0.77700 0.93512 0.90958 0.91719 0.89188 0.92470 0.90260 0.90772 0.86201 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.09 -0.62 6.07 -27.88 -0.17 -0.79 16 3 C -0.09 -0.83 5.13 -104.62 -0.54 -1.36 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 5 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 6 C -0.07 -0.72 4.37 -104.62 -0.46 -1.18 16 7 C -0.10 -0.98 5.83 -29.03 -0.17 -1.15 16 8 C 0.51 6.80 7.82 -10.98 -0.09 6.71 16 9 O -0.53 -9.39 15.68 5.56 0.09 -9.31 16 10 N -0.71 -8.87 5.07 -53.37 -0.27 -9.14 16 11 C 0.13 2.00 4.08 -67.49 -0.28 1.72 16 12 H 0.09 1.55 7.54 -51.93 -0.39 1.16 16 13 C -0.17 -3.11 7.68 -25.75 -0.20 -3.31 16 14 C 0.19 3.61 4.27 -67.48 -0.29 3.32 16 15 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 16 N -0.71 -16.92 5.35 -52.99 -0.28 -17.20 16 17 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C -0.12 -1.85 0.91 -154.71 -0.14 -1.99 16 26 C -0.13 -1.72 7.43 -26.29 -0.20 -1.92 16 27 C -0.13 -1.99 8.08 -25.75 -0.21 -2.20 16 28 C -0.11 -1.76 7.45 -26.28 -0.20 -1.96 16 29 C -0.10 -1.10 9.70 -39.58 -0.38 -1.49 16 30 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 40 H 0.40 4.12 8.54 -40.82 -0.35 3.77 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.39 9.81 5.87 -40.82 -0.24 9.57 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 1.45 6.43 -51.93 -0.33 1.12 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 52 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 421.98 15.07 6.36 6.36 Total: -1.00 -32.09 421.98 -11.62 -43.71 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -8.88 Total: 13.06 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -4.34 Total: -17.77 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.17 Total: -53.04 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.09 -11.62 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733658.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.295 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds