Wall clock time and date at job start Wed Apr 1 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38238 * 119.99492 * 0.48004 * 5 4 3 7 7 C 1.50706 * 119.99437 * 179.77082 * 6 5 4 8 8 C 1.50701 * 109.46887 * 270.02388 * 7 6 5 9 9 O 1.21279 * 120.00251 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99795 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00236 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.88229 * 26.83628 * 11 10 8 13 13 C 1.53944 * 113.66073 * 255.49330 * 11 10 8 14 14 C 1.53953 * 87.29545 * 270.25893 * 13 11 10 15 15 H 1.08990 * 113.66006 * 89.73873 * 14 13 11 16 16 N 1.46496 * 113.66130 * 220.70001 * 14 13 11 17 17 C 1.36931 * 120.00420 * 255.49205 * 16 14 13 18 18 H 1.08002 * 119.99857 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00431 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99663 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00262 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47235 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47247 * 119.99589 * 21 19 17 24 24 H 1.48493 * 109.47544 * 240.00227 * 21 19 17 25 25 C 1.52907 * 113.66413 * 158.30303 * 11 10 8 26 26 C 1.52905 * 121.14371 * 323.84897 * 25 11 10 27 27 C 1.53945 * 86.78506 * 209.37698 * 26 25 11 28 28 C 1.52912 * 121.13899 * 215.28628 * 25 11 10 29 29 C 1.38225 * 120.00505 * 359.79428 * 6 5 4 30 30 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 34 34 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 35 35 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 36 36 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 37 37 H 1.07993 * 120.00120 * 180.25541 * 5 4 3 38 38 H 1.09002 * 109.47512 * 30.02407 * 7 6 5 39 39 H 1.09001 * 109.46797 * 150.02415 * 7 6 5 40 40 H 0.97003 * 119.99960 * 359.97438 * 10 8 7 41 41 H 1.08996 * 113.58179 * 24.86716 * 13 11 10 42 42 H 1.09009 * 113.58066 * 155.57699 * 13 11 10 43 43 H 0.97011 * 119.99793 * 75.50110 * 16 14 13 44 44 H 0.97005 * 119.99790 * 179.97438 * 20 19 17 45 45 H 1.08999 * 113.66475 * 323.85229 * 26 25 11 46 46 H 1.09005 * 113.65806 * 94.90251 * 26 25 11 47 47 H 1.09004 * 113.58028 * 270.13339 * 27 26 25 48 48 H 1.09001 * 113.57982 * 139.33813 * 27 26 25 49 49 H 1.09003 * 113.66374 * 265.10102 * 28 25 11 50 50 H 1.08996 * 113.66259 * 36.15545 * 28 25 11 51 51 H 1.07998 * 120.00220 * 179.97438 * 29 6 5 52 52 H 1.07998 * 120.00407 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4563 5.4482 -0.0001 8 6 4.9634 5.4482 -0.0002 9 8 5.5698 4.3980 0.0003 10 7 5.6372 6.6155 0.0003 11 6 7.1022 6.6157 -0.0004 12 1 7.5259 5.7199 -0.4545 13 6 7.7205 6.9681 1.3647 14 6 7.6847 8.4412 0.9187 15 1 6.7585 8.9541 1.1774 16 7 8.8802 9.1990 1.2961 17 6 8.8284 10.0850 2.3389 18 1 7.9063 10.2248 2.8834 19 6 9.9611 10.8035 2.6962 20 7 11.0848 10.6334 2.0323 21 14 9.8907 12.0116 4.1191 22 1 8.5224 12.0173 4.6963 23 1 10.8657 11.6048 5.1627 24 1 10.2278 13.3726 3.6302 25 6 7.7155 7.9173 -0.5176 26 6 7.0645 8.6997 -1.6587 27 6 8.4808 9.1830 -2.0197 28 6 9.0111 7.9130 -1.3299 29 6 2.7238 3.3757 1.1971 30 6 2.2627 2.0725 1.1971 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 2.0926 1.5598 -2.1325 37 1 2.9044 3.8845 -2.1325 38 1 3.0930 5.9620 -0.8901 39 1 3.0930 5.9620 0.8899 40 1 5.1521 7.4555 0.0003 41 1 7.0658 6.7519 2.2088 42 1 8.7288 6.5768 1.5007 43 1 9.7086 9.0732 0.8072 44 1 11.8763 11.1358 2.2817 45 1 6.6110 8.0658 -2.4207 46 1 6.4029 9.4973 -1.3205 47 1 8.7685 10.1055 -1.5154 48 1 8.6725 9.2088 -3.0924 49 1 9.9047 8.0821 -0.7291 50 1 9.1047 7.0581 -1.9995 51 1 2.9038 3.8848 2.1324 52 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078733658.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:26 Heat of formation + Delta-G solvation = 11.537248 kcal Electronic energy + Delta-G solvation = -29261.776611 eV Core-core repulsion = 25419.312086 eV Total energy + Delta-G solvation = -3842.464525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.93299 -40.72374 -39.62526 -36.36171 -35.77578 -35.44666 -33.82338 -32.28977 -31.77677 -31.46436 -28.22854 -26.69488 -26.43399 -25.50080 -24.42447 -23.61583 -23.57347 -22.14570 -21.40462 -21.03086 -19.60862 -18.80561 -18.00083 -17.39869 -16.92310 -16.73415 -16.66303 -16.35467 -16.00535 -15.77339 -15.63492 -15.33428 -14.87055 -14.59613 -14.54301 -14.19600 -14.16118 -13.89306 -13.70545 -13.48332 -13.32282 -13.16672 -12.92358 -12.90182 -12.88151 -12.75270 -12.52565 -12.46626 -12.10661 -12.04073 -11.91505 -11.85668 -11.68681 -11.63579 -11.28963 -11.19358 -10.89667 -10.84426 -10.67113 -9.87988 -9.76264 -9.38446 -8.94902 -7.93403 -5.20665 0.42574 0.56086 1.47032 1.47841 1.57206 1.70100 2.19517 2.56513 2.92022 3.37834 3.49893 3.69219 3.72270 3.77851 3.91094 3.94521 3.96079 4.02107 4.10858 4.14433 4.17818 4.23289 4.28541 4.50539 4.52286 4.59563 4.61165 4.65013 4.66675 4.74852 4.76155 4.80220 4.87985 4.90565 5.03097 5.07000 5.09581 5.10180 5.14026 5.19910 5.20653 5.25634 5.29828 5.39421 5.50459 5.54746 5.60414 5.64646 5.71386 5.72066 5.76472 6.16929 6.28803 6.65795 7.34592 7.35823 8.13314 8.36228 9.29903 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.002043 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.012942 B =13703.998051 C =14596.326443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.115 4.115 6 C -0.084 4.084 7 C -0.095 4.095 8 C 0.515 3.485 9 O -0.581 6.581 10 N -0.694 5.694 11 C 0.151 3.849 12 H 0.082 0.918 13 C -0.174 4.174 14 C 0.179 3.821 15 H 0.083 0.917 16 N -0.721 5.721 17 C -0.238 4.238 18 H 0.077 0.923 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.299 1.299 24 H -0.294 1.294 25 C -0.109 4.109 26 C -0.107 4.107 27 C -0.131 4.131 28 C -0.116 4.116 29 C -0.119 4.119 30 C -0.131 4.131 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.415 0.585 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.377 0.623 44 H 0.249 0.751 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.095 0.905 51 H 0.124 0.876 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.190 -15.341 -9.339 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.133 4.133 6 C -0.084 4.084 7 C -0.134 4.134 8 C 0.303 3.697 9 O -0.460 6.460 10 N -0.345 5.345 11 C 0.044 3.956 12 H 0.100 0.900 13 C -0.216 4.216 14 C 0.069 3.931 15 H 0.100 0.900 16 N -0.359 5.359 17 C -0.370 4.370 18 H 0.095 0.905 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.798 3.202 22 H -0.189 1.189 23 H -0.226 1.226 24 H -0.222 1.222 25 C -0.111 4.111 26 C -0.144 4.144 27 C -0.169 4.169 28 C -0.154 4.154 29 C -0.137 4.137 30 C -0.149 4.149 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.251 0.749 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.210 0.790 44 H 0.058 0.942 45 H 0.118 0.882 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.099 0.901 49 H 0.064 0.936 50 H 0.114 0.886 51 H 0.142 0.858 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.843 -15.949 -9.181 29.334 hybrid contribution 1.048 1.059 1.023 1.808 sum -21.795 -14.890 -8.158 27.627 Atomic orbital electron populations 1.21715 0.93893 1.02376 1.01967 1.20586 0.96807 0.91526 1.03309 1.20178 0.98832 0.97153 0.93117 1.21234 1.00269 0.94905 0.98270 1.21221 0.98878 0.95326 0.97845 1.19489 0.99532 0.95677 0.93702 1.20729 0.89448 0.95429 1.07793 1.21140 0.90938 0.82965 0.74682 1.90710 1.71426 1.32895 1.51016 1.45512 1.05585 1.09104 1.74330 1.21300 0.80552 0.97524 0.96183 0.90031 1.24128 0.99786 1.00587 0.97139 1.21566 0.90404 0.89460 0.91651 0.89965 1.42567 1.09426 1.46965 1.36981 1.19704 0.96019 1.14078 1.07167 0.90514 1.25508 0.95824 1.02956 1.02504 1.69821 1.01296 1.46412 1.44368 0.85137 0.77545 0.78477 0.78994 1.18942 1.22621 1.22169 1.23263 0.98083 0.94794 0.94981 1.22613 0.96047 0.99028 0.96744 1.22662 0.97120 0.96804 1.00288 1.22528 0.95714 0.99109 0.98000 1.21209 0.99134 0.95477 0.97915 1.21209 1.00437 0.94887 0.98350 0.92688 0.91204 0.92910 0.90760 0.90488 0.84711 0.85033 0.84972 0.85741 0.74859 0.92626 0.91964 0.78953 0.94202 0.88210 0.90864 0.92460 0.90139 0.93553 0.88618 0.85753 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.08 -1.12 6.07 29.85 0.18 -0.94 16 3 C -0.09 -1.68 5.13 -19.87 -0.10 -1.79 16 4 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 5 C -0.11 -2.22 9.70 22.27 0.22 -2.00 16 6 C -0.08 -1.69 4.37 -19.87 -0.09 -1.77 16 7 C -0.09 -1.50 5.83 29.10 0.17 -1.33 16 8 C 0.51 12.51 7.82 87.66 0.69 13.20 16 9 O -0.58 -19.89 15.68 -3.03 -0.05 -19.94 16 10 N -0.69 -15.71 5.07 -441.17 -2.24 -17.95 16 11 C 0.15 4.43 4.08 45.28 0.18 4.62 16 12 H 0.08 2.66 7.54 -2.39 -0.02 2.65 16 13 C -0.17 -6.25 7.68 31.23 0.24 -6.01 16 14 C 0.18 6.68 4.27 45.28 0.19 6.88 16 15 H 0.08 2.92 8.12 -2.39 -0.02 2.90 16 16 N -0.72 -35.10 5.35 -321.57 -1.72 -36.83 16 17 C -0.24 -12.86 9.98 84.03 0.84 -12.02 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 19 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 20 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 21 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 25 C -0.11 -3.27 0.91 -52.31 -0.05 -3.31 16 26 C -0.11 -2.60 7.43 30.88 0.23 -2.37 16 27 C -0.13 -3.80 8.08 31.23 0.25 -3.55 16 28 C -0.12 -3.62 7.45 30.88 0.23 -3.39 16 29 C -0.12 -2.48 9.70 22.27 0.22 -2.27 16 30 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.08 0.90 8.08 -2.39 -0.02 0.89 16 36 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.13 1.29 8.09 -2.39 -0.02 1.27 16 39 H 0.12 1.44 8.09 -2.39 -0.02 1.42 16 40 H 0.41 7.06 8.54 -92.71 -0.79 6.27 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.06 2.50 8.14 -2.38 -0.02 2.49 16 43 H 0.38 19.86 5.87 -92.70 -0.54 19.32 16 44 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 45 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.05 1.77 6.43 -2.39 -0.02 1.75 16 50 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 51 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 52 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -71.42 421.98 2.89 -68.53 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.43 Total: 42.03 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 5.01 Total: -25.16 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -3.68 Total: -113.29 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.42 2.89 -68.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733658.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.066 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds