Wall clock time and date at job start Wed Apr 1 2020 03:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47190 * 2 1 4 4 C 1.38240 * 119.99843 * 90.00056 * 3 2 1 5 5 C 1.38235 * 119.99726 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99862 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99774 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47268 * 89.99501 * 7 6 5 9 9 O 1.21286 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99927 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00030 * 180.02562 * 10 8 7 12 12 H 1.08993 * 112.94617 * 336.40985 * 11 10 8 13 13 C 1.53949 * 113.66194 * 107.81453 * 11 10 8 14 14 C 1.53950 * 87.29535 * 139.20730 * 13 11 10 15 15 H 1.09008 * 113.74633 * 220.78601 * 14 13 11 16 16 N 1.46499 * 113.66341 * 89.73825 * 14 13 11 17 17 C 1.36939 * 119.99933 * 108.08949 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47144 * 90.00258 * 21 19 17 23 23 H 1.48500 * 109.47140 * 210.00775 * 21 19 17 24 24 H 1.48502 * 109.46967 * 330.00206 * 21 19 17 25 25 C 1.52909 * 86.78227 * 335.26395 * 14 13 11 26 26 C 1.52907 * 121.14177 * 259.18037 * 25 14 13 27 27 C 1.53951 * 86.78403 * 209.38090 * 26 25 14 28 28 C 1.52906 * 121.13749 * 150.61521 * 25 14 13 29 29 C 1.38230 * 120.00608 * 0.27055 * 6 5 4 30 30 C 1.38230 * 120.00095 * 269.97914 * 3 2 1 31 31 H 1.09000 * 109.47027 * 59.99708 * 1 2 3 32 32 H 1.09003 * 109.47542 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47115 * 299.99874 * 1 2 3 34 34 H 1.09000 * 109.47115 * 240.00126 * 2 1 3 35 35 H 1.09000 * 109.47027 * 120.00292 * 2 1 3 36 36 H 1.07994 * 119.99896 * 359.97438 * 4 3 2 37 37 H 1.08004 * 119.99529 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.46883 * 329.99760 * 7 6 5 39 39 H 1.09000 * 109.46943 * 209.99865 * 7 6 5 40 40 H 0.96999 * 120.00435 * 0.02562 * 10 8 7 41 41 H 1.09002 * 113.58121 * 24.60423 * 13 11 10 42 42 H 1.08996 * 113.57817 * 253.80635 * 13 11 10 43 43 H 0.97001 * 119.99790 * 287.80923 * 16 14 13 44 44 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 45 45 H 1.08997 * 113.66251 * 323.85149 * 26 25 14 46 46 H 1.09002 * 113.66158 * 94.90664 * 26 25 14 47 47 H 1.09000 * 113.57860 * 270.12530 * 27 26 25 48 48 H 1.09001 * 113.64943 * 139.34808 * 27 26 25 49 49 H 1.09002 * 113.66647 * 265.09510 * 28 25 14 50 50 H 1.09003 * 113.66258 * 36.05869 * 28 25 14 51 51 H 1.07999 * 120.00460 * 179.72474 * 29 6 5 52 52 H 1.08001 * 119.99682 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9554 4.0268 0.0000 7 6 3.4589 5.4473 0.0000 8 6 4.9659 5.4461 0.0008 9 8 5.5715 4.3953 0.0008 10 7 5.6406 6.6128 0.0004 11 6 7.1057 6.6117 0.0005 12 1 7.5299 5.6917 0.4026 13 6 7.7240 7.0421 -1.3420 14 6 8.7617 7.8348 -0.5267 15 1 8.9957 8.8131 -0.9469 16 7 9.9575 7.0604 -0.1854 17 6 11.1479 7.3296 -0.8065 18 1 11.2041 8.1099 -1.5511 19 6 12.2822 6.5997 -0.4789 20 7 12.2135 5.6485 0.4283 21 14 13.9059 6.9664 -1.3266 22 1 14.6470 7.9947 -0.5530 23 1 14.7163 5.7244 -1.4024 24 1 13.6450 7.4717 -2.6984 25 6 7.7202 7.8808 0.5920 26 6 6.8736 9.1310 0.8333 27 6 6.8266 8.7079 2.3128 28 6 8.1400 7.9455 2.0609 29 6 2.7202 3.3770 -1.1971 30 6 2.2631 2.0723 -1.1971 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0824 1.5635 2.1324 37 1 2.9044 3.8845 2.1326 38 1 3.0955 5.9615 0.8898 39 1 3.0963 5.9612 -0.8902 40 1 5.1563 7.4532 0.0000 41 1 7.0676 7.6720 -1.9424 42 1 8.1536 6.2162 -1.9089 43 1 9.9069 6.3597 0.4834 44 1 13.0062 5.1383 0.6569 45 1 7.4114 10.0634 0.6618 46 1 5.9023 9.1036 0.3393 47 1 5.9849 8.0588 2.5541 48 1 6.9320 9.5400 3.0090 49 1 8.1805 6.9710 2.5477 50 1 9.0348 8.5434 2.2342 51 1 2.8968 3.8873 -2.1324 52 1 2.0838 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078733659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:34 Heat of formation + Delta-G solvation = 29.343046 kcal Electronic energy + Delta-G solvation = -29432.928338 eV Core-core repulsion = 25591.235930 eV Total energy + Delta-G solvation = -3841.692408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.37 seconds Orbital eigenvalues (eV) -40.67225 -39.79322 -38.52930 -35.09849 -34.75362 -33.96350 -32.46014 -31.35310 -30.99988 -29.58568 -27.44333 -25.54682 -24.58642 -24.11851 -23.47796 -22.83381 -22.56563 -20.85841 -20.14079 -20.12484 -18.10155 -17.26498 -16.66943 -16.41672 -15.99195 -15.77174 -15.30105 -15.13623 -14.88066 -14.68251 -14.15787 -13.94344 -13.85295 -13.78816 -13.42916 -13.06088 -13.00810 -12.71478 -12.48641 -12.29307 -12.25726 -12.06836 -11.85358 -11.82709 -11.66675 -11.49987 -11.39327 -11.00251 -10.95227 -10.93271 -10.82267 -10.64053 -10.21150 -10.06204 -9.88703 -9.77119 -9.56869 -9.39126 -8.96151 -8.82451 -8.60763 -8.58170 -6.96503 -5.77267 -3.06725 1.22706 1.36436 2.80233 3.31163 3.43541 3.48701 3.50754 3.77712 4.48596 4.54274 4.62178 4.66603 4.73661 4.85160 4.88423 4.91707 4.94901 4.99602 5.10324 5.14130 5.18423 5.28632 5.29287 5.35391 5.41322 5.46374 5.50531 5.62958 5.64038 5.71216 5.76845 5.86583 5.91008 5.97979 6.00184 6.01552 6.04199 6.05186 6.10747 6.27314 6.32767 6.41425 6.49844 6.51185 6.52701 6.65468 6.71693 6.77532 6.86298 6.93665 7.10747 7.69992 7.73183 8.40933 8.43532 9.51905 10.09111 10.43441 11.44772 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.002284 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.043055 B =12255.659971 C =13466.603193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.104 4.104 8 C 0.509 3.491 9 O -0.528 6.528 10 N -0.718 5.718 11 C 0.154 3.846 12 H 0.114 0.886 13 C -0.183 4.183 14 C 0.185 3.815 15 H 0.067 0.933 16 N -0.701 5.701 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.128 4.128 26 C -0.109 4.109 27 C -0.141 4.141 28 C -0.114 4.114 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.395 0.605 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.087 0.913 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.895 -0.839 1.115 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.067 4.067 7 C -0.144 4.144 8 C 0.294 3.706 9 O -0.404 6.404 10 N -0.369 5.369 11 C 0.050 3.950 12 H 0.132 0.868 13 C -0.225 4.225 14 C 0.072 3.928 15 H 0.085 0.915 16 N -0.338 5.338 17 C -0.374 4.374 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.131 4.131 26 C -0.147 4.147 27 C -0.179 4.179 28 C -0.151 4.151 29 C -0.120 4.120 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.105 0.895 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.253 -1.578 1.020 25.322 hybrid contribution 0.730 0.325 -0.255 0.839 sum -24.522 -1.253 0.766 24.566 Atomic orbital electron populations 1.21743 0.94837 1.01561 1.02136 1.20540 0.96026 0.92847 1.02883 1.19860 0.99341 0.96069 0.93267 1.20940 1.00369 0.94754 0.97448 1.20943 0.98784 0.94935 0.97340 1.19248 0.99048 0.94804 0.93582 1.20702 0.93151 0.95594 1.04925 1.20499 0.89374 0.84212 0.76499 1.90762 1.70130 1.31138 1.48340 1.46123 1.07835 1.07922 1.75062 1.22246 0.77301 0.97988 0.97477 0.86836 1.24306 0.99932 1.01757 0.96533 1.20793 0.85759 0.94476 0.91760 0.91479 1.42092 1.03848 1.40398 1.47473 1.19257 0.86405 1.14986 1.16783 0.91029 1.24768 0.98073 0.98549 0.99372 1.69672 1.28838 1.24448 1.34712 0.86181 0.83948 0.77049 0.78935 1.21727 1.21776 1.20738 1.23512 0.98274 0.94726 0.96572 1.22504 0.98755 0.97229 0.96196 1.22862 0.98820 0.99922 0.96248 1.22540 0.96838 1.00543 0.95206 1.20950 0.98757 0.94926 0.97360 1.20942 1.00367 0.94732 0.97455 0.92612 0.92512 0.92607 0.91076 0.91077 0.86280 0.86307 0.88234 0.88209 0.77018 0.91337 0.91014 0.77923 0.93419 0.89662 0.92357 0.90952 0.92019 0.91851 0.89462 0.86286 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.09 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 6 C -0.07 -0.77 4.37 -104.62 -0.46 -1.23 16 7 C -0.10 -1.02 5.83 -29.03 -0.17 -1.19 16 8 C 0.51 7.20 7.82 -10.99 -0.09 7.12 16 9 O -0.53 -10.20 15.64 5.55 0.09 -10.12 16 10 N -0.72 -9.29 5.28 -53.37 -0.28 -9.58 16 11 C 0.15 2.55 4.03 -67.48 -0.27 2.28 16 12 H 0.11 2.33 7.47 -51.93 -0.39 1.94 16 13 C -0.18 -3.24 7.68 -25.75 -0.20 -3.44 16 14 C 0.19 3.61 4.36 -67.48 -0.29 3.31 16 15 H 0.07 1.30 8.10 -51.92 -0.42 0.88 16 16 N -0.70 -17.34 5.09 -52.99 -0.27 -17.61 16 17 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 21 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.13 -2.01 0.92 -154.71 -0.14 -2.15 16 26 C -0.11 -1.31 7.47 -26.28 -0.20 -1.51 16 27 C -0.14 -1.72 8.08 -25.75 -0.21 -1.93 16 28 C -0.11 -1.81 7.49 -26.29 -0.20 -2.01 16 29 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 30 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.39 3.88 6.72 -40.82 -0.27 3.60 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.39 10.34 7.81 -40.82 -0.32 10.02 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 0.57 6.42 -51.93 -0.33 0.24 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 52 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 422.02 15.07 6.36 6.36 Total: -1.00 -33.09 422.02 -11.62 -44.71 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -8.88 Total: 13.58 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -4.34 Total: -17.29 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.17 Total: -54.65 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.09 -11.62 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.056 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.37 seconds