Wall clock time and date at job start Wed Apr 1 2020 03:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47190 * 2 1 4 4 C 1.38240 * 119.99843 * 90.00056 * 3 2 1 5 5 C 1.38235 * 119.99726 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99862 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99774 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47268 * 89.99501 * 7 6 5 9 9 O 1.21286 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99927 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00030 * 180.02562 * 10 8 7 12 12 H 1.08993 * 112.94617 * 336.40985 * 11 10 8 13 13 C 1.53949 * 113.66194 * 107.81453 * 11 10 8 14 14 C 1.53950 * 87.29535 * 139.20730 * 13 11 10 15 15 H 1.09008 * 113.74633 * 220.78601 * 14 13 11 16 16 N 1.46499 * 113.66341 * 89.73825 * 14 13 11 17 17 C 1.36939 * 119.99933 * 108.08949 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47144 * 90.00258 * 21 19 17 23 23 H 1.48500 * 109.47140 * 210.00775 * 21 19 17 24 24 H 1.48502 * 109.46967 * 330.00206 * 21 19 17 25 25 C 1.52909 * 86.78227 * 335.26395 * 14 13 11 26 26 C 1.52907 * 121.14177 * 259.18037 * 25 14 13 27 27 C 1.53951 * 86.78403 * 209.38090 * 26 25 14 28 28 C 1.52906 * 121.13749 * 150.61521 * 25 14 13 29 29 C 1.38230 * 120.00608 * 0.27055 * 6 5 4 30 30 C 1.38230 * 120.00095 * 269.97914 * 3 2 1 31 31 H 1.09000 * 109.47027 * 59.99708 * 1 2 3 32 32 H 1.09003 * 109.47542 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47115 * 299.99874 * 1 2 3 34 34 H 1.09000 * 109.47115 * 240.00126 * 2 1 3 35 35 H 1.09000 * 109.47027 * 120.00292 * 2 1 3 36 36 H 1.07994 * 119.99896 * 359.97438 * 4 3 2 37 37 H 1.08004 * 119.99529 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.46883 * 329.99760 * 7 6 5 39 39 H 1.09000 * 109.46943 * 209.99865 * 7 6 5 40 40 H 0.96999 * 120.00435 * 0.02562 * 10 8 7 41 41 H 1.09002 * 113.58121 * 24.60423 * 13 11 10 42 42 H 1.08996 * 113.57817 * 253.80635 * 13 11 10 43 43 H 0.97001 * 119.99790 * 287.80923 * 16 14 13 44 44 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 45 45 H 1.08997 * 113.66251 * 323.85149 * 26 25 14 46 46 H 1.09002 * 113.66158 * 94.90664 * 26 25 14 47 47 H 1.09000 * 113.57860 * 270.12530 * 27 26 25 48 48 H 1.09001 * 113.64943 * 139.34808 * 27 26 25 49 49 H 1.09002 * 113.66647 * 265.09510 * 28 25 14 50 50 H 1.09003 * 113.66258 * 36.05869 * 28 25 14 51 51 H 1.07999 * 120.00460 * 179.72474 * 29 6 5 52 52 H 1.08001 * 119.99682 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9554 4.0268 0.0000 7 6 3.4589 5.4473 0.0000 8 6 4.9659 5.4461 0.0008 9 8 5.5715 4.3953 0.0008 10 7 5.6406 6.6128 0.0004 11 6 7.1057 6.6117 0.0005 12 1 7.5299 5.6917 0.4026 13 6 7.7240 7.0421 -1.3420 14 6 8.7617 7.8348 -0.5267 15 1 8.9957 8.8131 -0.9469 16 7 9.9575 7.0604 -0.1854 17 6 11.1479 7.3296 -0.8065 18 1 11.2041 8.1099 -1.5511 19 6 12.2822 6.5997 -0.4789 20 7 12.2135 5.6485 0.4283 21 14 13.9059 6.9664 -1.3266 22 1 14.6470 7.9947 -0.5530 23 1 14.7163 5.7244 -1.4024 24 1 13.6450 7.4717 -2.6984 25 6 7.7202 7.8808 0.5920 26 6 6.8736 9.1310 0.8333 27 6 6.8266 8.7079 2.3128 28 6 8.1400 7.9455 2.0609 29 6 2.7202 3.3770 -1.1971 30 6 2.2631 2.0723 -1.1971 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0824 1.5635 2.1324 37 1 2.9044 3.8845 2.1326 38 1 3.0955 5.9615 0.8898 39 1 3.0963 5.9612 -0.8902 40 1 5.1563 7.4532 0.0000 41 1 7.0676 7.6720 -1.9424 42 1 8.1536 6.2162 -1.9089 43 1 9.9069 6.3597 0.4834 44 1 13.0062 5.1383 0.6569 45 1 7.4114 10.0634 0.6618 46 1 5.9023 9.1036 0.3393 47 1 5.9849 8.0588 2.5541 48 1 6.9320 9.5400 3.0090 49 1 8.1805 6.9710 2.5477 50 1 9.0348 8.5434 2.2342 51 1 2.8968 3.8873 -2.1324 52 1 2.0838 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078733659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:32 Heat of formation + Delta-G solvation = 10.441982 kcal Electronic energy + Delta-G solvation = -29433.747949 eV Core-core repulsion = 25591.235930 eV Total energy + Delta-G solvation = -3842.512019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.95485 -40.72244 -39.60720 -36.56045 -35.60004 -35.40061 -34.10190 -32.25922 -31.79579 -31.37731 -28.30511 -26.75103 -26.23764 -25.37144 -24.73857 -23.75907 -23.63657 -21.79538 -21.46783 -21.15435 -19.54609 -19.04301 -17.85189 -17.47593 -16.92089 -16.78501 -16.75439 -16.21181 -16.01635 -15.86748 -15.66412 -15.24856 -14.79314 -14.60068 -14.56369 -14.32377 -14.17315 -13.93811 -13.72703 -13.37891 -13.33615 -13.16476 -12.99502 -12.90297 -12.87190 -12.76778 -12.55292 -12.50585 -12.18056 -12.05753 -11.98408 -11.78227 -11.70392 -11.65365 -11.35551 -11.22178 -10.97644 -10.77358 -10.63912 -9.87726 -9.78092 -9.39684 -8.99350 -7.95709 -5.24672 0.41013 0.54196 1.45185 1.47479 1.55774 1.70427 2.25694 2.53926 2.91584 3.35821 3.43381 3.52048 3.70074 3.80524 3.89608 3.93265 3.94686 4.05789 4.08304 4.15931 4.21207 4.22344 4.28245 4.49096 4.50598 4.58407 4.60356 4.62176 4.64962 4.74042 4.78202 4.78851 4.88977 4.97440 5.03752 5.05256 5.08206 5.11720 5.13940 5.18695 5.23840 5.24492 5.30884 5.38070 5.43851 5.51675 5.52955 5.59652 5.69217 5.74531 5.77629 6.15369 6.26181 6.67640 7.31046 7.38198 8.08524 8.30346 9.27743 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.002284 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.043055 B =12255.659971 C =13466.603193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.118 4.118 6 C -0.085 4.085 7 C -0.091 4.091 8 C 0.506 3.494 9 O -0.588 6.588 10 N -0.699 5.699 11 C 0.164 3.836 12 H 0.064 0.936 13 C -0.171 4.171 14 C 0.164 3.836 15 H 0.073 0.927 16 N -0.716 5.716 17 C -0.239 4.239 18 H 0.081 0.919 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.975 3.025 22 H -0.285 1.285 23 H -0.300 1.300 24 H -0.268 1.268 25 C -0.117 4.117 26 C -0.092 4.092 27 C -0.122 4.122 28 C -0.130 4.130 29 C -0.118 4.118 30 C -0.131 4.131 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.416 0.584 41 H 0.105 0.895 42 H 0.033 0.967 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.037 0.963 50 H 0.067 0.933 51 H 0.128 0.872 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.771 1.522 0.550 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.136 4.136 6 C -0.085 4.085 7 C -0.131 4.131 8 C 0.294 3.706 9 O -0.468 6.468 10 N -0.352 5.352 11 C 0.058 3.942 12 H 0.082 0.918 13 C -0.213 4.213 14 C 0.053 3.947 15 H 0.091 0.909 16 N -0.353 5.353 17 C -0.371 4.371 18 H 0.099 0.901 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.804 3.196 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.193 1.193 25 C -0.119 4.119 26 C -0.130 4.130 27 C -0.159 4.159 28 C -0.168 4.168 29 C -0.136 4.136 30 C -0.149 4.149 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.256 0.744 41 H 0.123 0.877 42 H 0.052 0.948 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.056 0.944 50 H 0.086 0.914 51 H 0.146 0.854 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.204 0.870 0.428 28.221 hybrid contribution 1.577 -0.447 -0.091 1.641 sum -26.628 0.424 0.338 26.633 Atomic orbital electron populations 1.21708 0.93666 1.02415 1.02031 1.20589 0.96994 0.91494 1.03229 1.20185 0.98881 0.97148 0.93135 1.21229 1.00398 0.94941 0.98305 1.21223 0.98959 0.95445 0.97924 1.19524 0.99394 0.95972 0.93649 1.20736 0.89060 0.95305 1.07968 1.21335 0.91216 0.83262 0.74756 1.90752 1.71701 1.33336 1.50983 1.45857 1.06028 1.08957 1.74379 1.21653 0.79584 0.96426 0.96530 0.91771 1.24174 0.99771 1.00587 0.96773 1.21122 0.85125 0.94072 0.94376 0.90899 1.42248 1.05052 1.40837 1.47142 1.19696 0.87384 1.14069 1.15962 0.90142 1.25616 1.01697 0.99056 1.00763 1.69852 1.29274 1.26135 1.36947 0.85110 0.79628 0.76396 0.78452 1.21191 1.22642 1.19259 1.23399 0.97276 0.96314 0.94906 1.22531 0.99531 0.95039 0.95871 1.22789 0.96252 0.99814 0.97027 1.22580 0.98707 0.99778 0.95698 1.21226 0.99002 0.95450 0.97937 1.21226 1.00437 0.94919 0.98316 0.92721 0.91174 0.92691 0.90750 0.90721 0.84900 0.85307 0.84985 0.85070 0.74444 0.87659 0.94842 0.79778 0.94165 0.88737 0.88712 0.89567 0.90140 0.94374 0.91441 0.85368 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.89 71.98 0.71 -0.99 16 2 C -0.09 -1.31 6.06 29.85 0.18 -1.13 16 3 C -0.09 -1.91 5.13 -19.87 -0.10 -2.01 16 4 C -0.13 -2.75 9.70 22.27 0.22 -2.53 16 5 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 6 C -0.08 -1.87 4.37 -19.87 -0.09 -1.96 16 7 C -0.09 -1.53 5.83 29.10 0.17 -1.36 16 8 C 0.51 13.65 7.82 87.66 0.69 14.34 16 9 O -0.59 -23.32 15.64 -3.05 -0.05 -23.37 16 10 N -0.70 -16.49 5.28 -441.15 -2.33 -18.82 16 11 C 0.16 5.44 4.03 45.28 0.18 5.62 16 12 H 0.06 2.83 7.47 -2.39 -0.02 2.81 16 13 C -0.17 -6.03 7.68 31.23 0.24 -5.79 16 14 C 0.16 6.40 4.36 45.28 0.20 6.59 16 15 H 0.07 2.74 8.10 -2.38 -0.02 2.72 16 16 N -0.72 -36.98 5.09 -321.55 -1.64 -38.62 16 17 C -0.24 -13.49 9.97 84.03 0.84 -12.65 16 18 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 19 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 20 N -0.97 -61.70 13.06 21.65 0.28 -61.42 16 21 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C -0.12 -3.54 0.92 -52.31 -0.05 -3.58 16 26 C -0.09 -1.83 7.47 30.88 0.23 -1.60 16 27 C -0.12 -2.56 8.08 31.23 0.25 -2.31 16 28 C -0.13 -4.16 7.49 30.88 0.23 -3.93 16 29 C -0.12 -2.62 9.70 22.27 0.22 -2.40 16 30 C -0.13 -2.77 9.70 22.27 0.22 -2.55 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 35 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 36 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.13 1.37 8.09 -2.39 -0.02 1.35 16 39 H 0.13 1.40 8.08 -2.39 -0.02 1.38 16 40 H 0.42 6.19 6.72 -92.71 -0.62 5.56 16 41 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.37 21.19 7.81 -92.71 -0.72 20.47 16 44 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.09 1.26 6.42 -2.39 -0.02 1.24 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 52 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -78.24 422.02 2.87 -75.36 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -0.44 Total: 42.44 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 5.01 Total: -24.82 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -3.68 Total: -118.86 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -78.24 2.87 -75.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.806 kcal (2) G-P(sol) polarization free energy of solvation -78.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds