Wall clock time and date at job start Wed Apr 1 2020 03:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47022 * 2 1 4 4 C 1.38233 * 120.00217 * 89.99891 * 3 2 1 5 5 C 1.38229 * 120.00443 * 179.97438 * 4 3 2 6 6 C 1.38244 * 119.99662 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99843 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47166 * 89.99956 * 7 6 5 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 H 1.08999 * 112.88888 * 334.66280 * 11 10 8 13 13 C 1.53947 * 113.66533 * 106.01541 * 11 10 8 14 14 C 1.53948 * 87.30115 * 139.20465 * 13 11 10 15 15 H 1.08997 * 113.66311 * 89.82245 * 14 13 11 16 16 N 1.46496 * 113.66290 * 220.79527 * 14 13 11 17 17 C 1.36939 * 119.99951 * 255.48815 * 16 14 13 18 18 H 1.07999 * 119.99828 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00064 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99818 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46921 * 60.00361 * 21 19 17 23 23 H 1.48501 * 109.47065 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47407 * 300.00374 * 21 19 17 25 25 C 1.52917 * 113.66219 * 203.32155 * 11 10 8 26 26 C 1.52905 * 121.13985 * 94.90052 * 25 11 10 27 27 C 1.53952 * 86.78130 * 209.38116 * 26 25 11 28 28 C 1.52908 * 121.13467 * 346.34066 * 25 11 10 29 29 C 1.38230 * 119.99748 * 0.27791 * 6 5 4 30 30 C 1.38234 * 120.00242 * 359.51358 * 29 6 5 31 31 H 1.08992 * 109.47169 * 300.00406 * 1 2 3 32 32 H 1.09000 * 109.46635 * 60.00447 * 1 2 3 33 33 H 1.08999 * 109.46863 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47734 * 240.00053 * 2 1 3 35 35 H 1.09005 * 109.47023 * 119.99786 * 2 1 3 36 36 H 1.08009 * 119.99849 * 359.97438 * 4 3 2 37 37 H 1.07996 * 120.00616 * 179.97438 * 5 4 3 38 38 H 1.08998 * 109.46890 * 329.99946 * 7 6 5 39 39 H 1.09002 * 109.46875 * 209.99748 * 7 6 5 40 40 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 41 41 H 1.09010 * 113.57737 * 253.81060 * 13 11 10 42 42 H 1.09000 * 113.57987 * 24.51987 * 13 11 10 43 43 H 0.96998 * 120.00268 * 75.49622 * 16 14 13 44 44 H 0.97004 * 120.00180 * 180.02562 * 20 19 17 45 45 H 1.08987 * 113.66816 * 323.85633 * 26 25 11 46 46 H 1.09002 * 113.65942 * 94.91160 * 26 25 11 47 47 H 1.09005 * 113.57911 * 270.13706 * 27 26 25 48 48 H 1.08997 * 113.65094 * 139.35412 * 27 26 25 49 49 H 1.09000 * 113.66383 * 265.10110 * 28 25 11 50 50 H 1.09000 * 113.66438 * 36.06290 * 28 25 11 51 51 H 1.08000 * 119.99992 * 179.73164 * 29 6 5 52 52 H 1.08003 * 120.00018 * 180.27828 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7240 3.3756 1.1972 6 6 2.9554 4.0269 -0.0001 7 6 3.4588 5.4474 -0.0001 8 6 4.9657 5.4462 0.0006 9 8 5.5714 4.3955 0.0015 10 7 5.6405 6.6130 0.0002 11 6 7.1054 6.6119 0.0069 12 1 7.5267 5.7053 0.4413 13 6 7.7299 6.9964 -1.3467 14 6 8.7640 7.8164 -0.5542 15 1 9.6532 7.2496 -0.2781 16 7 9.0798 9.1107 -1.1634 17 6 10.2650 9.2842 -1.8271 18 1 10.9667 8.4667 -1.9017 19 6 10.5639 10.5104 -2.4048 20 7 9.7085 11.5066 -2.3143 21 14 12.1811 10.7472 -3.3094 22 1 12.2602 9.7888 -4.4410 23 1 12.2583 12.1359 -3.8300 24 1 13.3104 10.5055 -2.3761 25 6 7.7176 7.8992 0.5604 26 6 8.1307 8.0109 2.0283 27 6 7.8264 9.5154 1.9094 28 6 6.8701 9.1565 0.7577 29 6 2.7200 3.3770 -1.1971 30 6 2.2629 2.0725 -1.1972 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8935 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0823 1.5636 2.1325 37 1 2.9036 3.8849 2.1324 38 1 3.0954 5.9616 0.8897 39 1 3.0962 5.9613 -0.8903 40 1 5.1560 7.4533 -0.0001 41 1 8.1618 6.1515 -1.8833 42 1 7.0757 7.6044 -1.9716 43 1 8.4494 9.8449 -1.0966 44 1 9.9173 12.3634 -2.7183 45 1 7.4657 7.4827 2.7114 46 1 9.1835 7.7902 2.2044 47 1 8.6840 10.1102 1.5948 48 1 7.3218 9.9297 2.7822 49 1 6.9156 9.8510 -0.0813 50 1 5.8502 8.9502 1.0822 51 1 2.8967 3.8873 -2.1325 52 1 2.0833 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078733660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:44 Heat of formation + Delta-G solvation = 27.996733 kcal Electronic energy + Delta-G solvation = -29236.809520 eV Core-core repulsion = 25395.058732 eV Total energy + Delta-G solvation = -3841.750788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.63597 -39.83432 -38.61208 -34.98066 -34.70423 -34.07400 -32.53411 -31.37875 -31.04792 -29.83945 -27.47292 -25.50929 -24.62399 -24.15679 -23.53226 -22.87869 -22.11574 -20.82717 -20.45318 -20.09479 -17.97861 -17.31883 -16.74064 -16.52297 -16.03465 -15.93615 -15.26818 -15.07294 -14.76358 -14.67183 -14.44029 -13.98265 -13.91214 -13.83447 -13.48031 -13.08828 -12.97931 -12.81600 -12.60908 -12.23906 -12.20828 -12.05139 -11.89962 -11.78861 -11.51366 -11.44136 -11.22517 -11.05591 -10.99877 -10.90896 -10.79206 -10.71230 -10.22918 -10.04733 -9.96307 -9.84744 -9.61009 -9.44334 -9.01170 -8.86084 -8.63314 -8.61842 -6.98183 -5.81068 -3.09291 1.17949 1.31513 2.73895 3.26916 3.42422 3.47200 3.47917 3.73122 4.44685 4.56625 4.57622 4.62711 4.78470 4.81828 4.87152 4.93048 4.96355 5.05777 5.07177 5.12732 5.24051 5.24320 5.26700 5.27918 5.37277 5.44701 5.46830 5.58394 5.66760 5.68346 5.82213 5.89303 5.90334 5.95393 5.95735 5.97334 5.99319 6.05829 6.23287 6.28116 6.31754 6.39938 6.46845 6.47931 6.51251 6.60719 6.64408 6.84813 6.88501 6.93122 7.08034 7.68104 7.68697 8.36465 8.38040 9.49580 10.06223 10.41367 11.41138 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.001983 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.831063 B =14118.887580 C =14818.805303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.065 4.065 7 C -0.105 4.105 8 C 0.512 3.488 9 O -0.536 6.536 10 N -0.713 5.713 11 C 0.132 3.868 12 H 0.108 0.892 13 C -0.173 4.173 14 C 0.192 3.808 15 H 0.079 0.921 16 N -0.706 5.706 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.117 4.117 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.398 0.602 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.056 0.944 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.120 0.880 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.210 -15.763 8.242 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.066 4.066 7 C -0.145 4.145 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.364 5.364 11 C 0.027 3.973 12 H 0.125 0.875 13 C -0.216 4.216 14 C 0.079 3.921 15 H 0.097 0.903 16 N -0.345 5.345 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.120 4.120 26 C -0.164 4.164 27 C -0.168 4.168 28 C -0.155 4.155 29 C -0.120 4.120 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.233 0.767 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.222 0.778 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.089 0.911 51 H 0.138 0.862 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.571 -16.478 8.146 26.130 hybrid contribution 0.459 0.896 -0.581 1.163 sum -18.112 -15.582 7.564 25.061 Atomic orbital electron populations 1.21744 0.94806 1.01577 1.02189 1.20539 0.96069 0.92831 1.02810 1.19861 0.99374 0.96090 0.93269 1.20931 1.00440 0.94772 0.97420 1.20939 0.98884 0.94903 0.97326 1.19257 0.98991 0.94765 0.93566 1.20707 0.93081 0.95583 1.05153 1.20480 0.89413 0.84086 0.76267 1.90714 1.70241 1.31223 1.49100 1.46011 1.07628 1.08108 1.74619 1.22261 0.78126 0.98404 0.98530 0.87459 1.24259 1.00416 1.00667 0.96225 1.21096 0.92741 0.88695 0.89563 0.90279 1.42327 1.20806 1.08436 1.62952 1.19252 0.95193 0.96434 1.26529 0.91135 1.24731 0.98429 0.96101 1.01473 1.69639 1.35873 1.02754 1.49787 0.86272 0.83477 0.76773 0.79687 1.21263 1.21728 1.21257 1.23584 0.98739 0.93971 0.95697 1.22704 1.01100 0.96845 0.95738 1.22732 1.00134 0.96321 0.97580 1.22430 0.96694 0.96764 0.99570 1.20971 0.98673 0.94895 0.97432 1.20948 1.00335 0.94744 0.97458 0.92598 0.92568 0.92507 0.91099 0.91129 0.86316 0.86329 0.88143 0.88025 0.76659 0.92249 0.90212 0.77774 0.93445 0.91029 0.91494 0.89153 0.92514 0.90281 0.91134 0.86217 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.54 16 2 C -0.09 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.09 -0.83 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.17 9.70 -39.59 -0.38 -1.55 16 5 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 6 C -0.07 -0.73 4.37 -104.62 -0.46 -1.18 16 7 C -0.11 -1.01 5.83 -29.04 -0.17 -1.18 16 8 C 0.51 6.86 7.82 -10.98 -0.09 6.77 16 9 O -0.54 -9.44 15.66 5.56 0.09 -9.36 16 10 N -0.71 -9.09 5.28 -53.37 -0.28 -9.38 16 11 C 0.13 2.01 4.09 -67.48 -0.28 1.73 16 12 H 0.11 1.76 7.51 -51.93 -0.39 1.37 16 13 C -0.17 -3.07 7.68 -25.75 -0.20 -3.27 16 14 C 0.19 3.70 4.36 -67.38 -0.29 3.41 16 15 H 0.08 1.56 8.12 -51.93 -0.42 1.14 16 16 N -0.71 -16.82 5.36 -52.90 -0.28 -17.10 16 17 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 21 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C -0.12 -1.83 1.07 -154.61 -0.17 -1.99 16 26 C -0.13 -1.82 7.85 -26.28 -0.21 -2.02 16 27 C -0.13 -1.94 8.08 -25.75 -0.21 -2.15 16 28 C -0.12 -1.71 6.77 -26.29 -0.18 -1.89 16 29 C -0.10 -1.12 9.70 -39.59 -0.38 -1.50 16 30 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 39 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.40 4.23 6.97 -40.82 -0.28 3.95 16 41 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.39 9.63 5.87 -40.82 -0.24 9.39 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.07 0.93 8.14 -51.94 -0.42 0.50 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 1.35 6.43 -51.93 -0.33 1.02 16 50 H 0.07 0.84 6.98 -51.93 -0.36 0.48 16 51 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 52 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 419.39 15.07 6.32 6.32 Total: -1.00 -31.79 419.39 -11.57 -43.36 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -8.75 Total: 13.34 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -4.36 Total: -17.69 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.16 Total: -53.04 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -31.79 -11.57 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.352 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds