Wall clock time and date at job start Wed Apr 1 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47022 * 2 1 4 4 C 1.38233 * 120.00217 * 89.99891 * 3 2 1 5 5 C 1.38229 * 120.00443 * 179.97438 * 4 3 2 6 6 C 1.38244 * 119.99662 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99843 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47166 * 89.99956 * 7 6 5 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 H 1.08999 * 112.88888 * 334.66280 * 11 10 8 13 13 C 1.53947 * 113.66533 * 106.01541 * 11 10 8 14 14 C 1.53948 * 87.30115 * 139.20465 * 13 11 10 15 15 H 1.08997 * 113.66311 * 89.82245 * 14 13 11 16 16 N 1.46496 * 113.66290 * 220.79527 * 14 13 11 17 17 C 1.36939 * 119.99951 * 255.48815 * 16 14 13 18 18 H 1.07999 * 119.99828 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00064 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99818 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46921 * 60.00361 * 21 19 17 23 23 H 1.48501 * 109.47065 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47407 * 300.00374 * 21 19 17 25 25 C 1.52917 * 113.66219 * 203.32155 * 11 10 8 26 26 C 1.52905 * 121.13985 * 94.90052 * 25 11 10 27 27 C 1.53952 * 86.78130 * 209.38116 * 26 25 11 28 28 C 1.52908 * 121.13467 * 346.34066 * 25 11 10 29 29 C 1.38230 * 119.99748 * 0.27791 * 6 5 4 30 30 C 1.38234 * 120.00242 * 359.51358 * 29 6 5 31 31 H 1.08992 * 109.47169 * 300.00406 * 1 2 3 32 32 H 1.09000 * 109.46635 * 60.00447 * 1 2 3 33 33 H 1.08999 * 109.46863 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47734 * 240.00053 * 2 1 3 35 35 H 1.09005 * 109.47023 * 119.99786 * 2 1 3 36 36 H 1.08009 * 119.99849 * 359.97438 * 4 3 2 37 37 H 1.07996 * 120.00616 * 179.97438 * 5 4 3 38 38 H 1.08998 * 109.46890 * 329.99946 * 7 6 5 39 39 H 1.09002 * 109.46875 * 209.99748 * 7 6 5 40 40 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 41 41 H 1.09010 * 113.57737 * 253.81060 * 13 11 10 42 42 H 1.09000 * 113.57987 * 24.51987 * 13 11 10 43 43 H 0.96998 * 120.00268 * 75.49622 * 16 14 13 44 44 H 0.97004 * 120.00180 * 180.02562 * 20 19 17 45 45 H 1.08987 * 113.66816 * 323.85633 * 26 25 11 46 46 H 1.09002 * 113.65942 * 94.91160 * 26 25 11 47 47 H 1.09005 * 113.57911 * 270.13706 * 27 26 25 48 48 H 1.08997 * 113.65094 * 139.35412 * 27 26 25 49 49 H 1.09000 * 113.66383 * 265.10110 * 28 25 11 50 50 H 1.09000 * 113.66438 * 36.06290 * 28 25 11 51 51 H 1.08000 * 119.99992 * 179.73164 * 29 6 5 52 52 H 1.08003 * 120.00018 * 180.27828 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7240 3.3756 1.1972 6 6 2.9554 4.0269 -0.0001 7 6 3.4588 5.4474 -0.0001 8 6 4.9657 5.4462 0.0006 9 8 5.5714 4.3955 0.0015 10 7 5.6405 6.6130 0.0002 11 6 7.1054 6.6119 0.0069 12 1 7.5267 5.7053 0.4413 13 6 7.7299 6.9964 -1.3467 14 6 8.7640 7.8164 -0.5542 15 1 9.6532 7.2496 -0.2781 16 7 9.0798 9.1107 -1.1634 17 6 10.2650 9.2842 -1.8271 18 1 10.9667 8.4667 -1.9017 19 6 10.5639 10.5104 -2.4048 20 7 9.7085 11.5066 -2.3143 21 14 12.1811 10.7472 -3.3094 22 1 12.2602 9.7888 -4.4410 23 1 12.2583 12.1359 -3.8300 24 1 13.3104 10.5055 -2.3761 25 6 7.7176 7.8992 0.5604 26 6 8.1307 8.0109 2.0283 27 6 7.8264 9.5154 1.9094 28 6 6.8701 9.1565 0.7577 29 6 2.7200 3.3770 -1.1971 30 6 2.2629 2.0725 -1.1972 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8935 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0823 1.5636 2.1325 37 1 2.9036 3.8849 2.1324 38 1 3.0954 5.9616 0.8897 39 1 3.0962 5.9613 -0.8903 40 1 5.1560 7.4533 -0.0001 41 1 8.1618 6.1515 -1.8833 42 1 7.0757 7.6044 -1.9716 43 1 8.4494 9.8449 -1.0966 44 1 9.9173 12.3634 -2.7183 45 1 7.4657 7.4827 2.7114 46 1 9.1835 7.7902 2.2044 47 1 8.6840 10.1102 1.5948 48 1 7.3218 9.9297 2.7822 49 1 6.9156 9.8510 -0.0813 50 1 5.8502 8.9502 1.0822 51 1 2.8967 3.8873 -2.1325 52 1 2.0833 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078733660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:42 Heat of formation + Delta-G solvation = 11.287076 kcal Electronic energy + Delta-G solvation = -29237.534105 eV Core-core repulsion = 25395.058732 eV Total energy + Delta-G solvation = -3842.475373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.89981 -40.72669 -39.62252 -36.27715 -35.74677 -35.43432 -34.03139 -32.29360 -31.78100 -31.53097 -28.27566 -26.78799 -26.27715 -25.51588 -24.46236 -23.61760 -23.42479 -21.80721 -21.68834 -21.07884 -19.63312 -18.79146 -17.96656 -17.61127 -16.94878 -16.79850 -16.42318 -16.34550 -16.01524 -15.94443 -15.70037 -15.19052 -14.79329 -14.61203 -14.54730 -14.31769 -14.18243 -13.83784 -13.71496 -13.52349 -13.17206 -13.11756 -12.94048 -12.90459 -12.86269 -12.70151 -12.52304 -12.33683 -12.23836 -12.06857 -12.04232 -11.85386 -11.68929 -11.63691 -11.31456 -11.21776 -10.98297 -10.80230 -10.69313 -9.84669 -9.76660 -9.38469 -8.94759 -7.93946 -5.20713 0.42462 0.55744 1.47225 1.48936 1.54968 1.70204 2.25884 2.57096 2.92770 3.36824 3.49974 3.62889 3.71662 3.77342 3.90889 3.94497 3.95955 4.02132 4.07416 4.14428 4.17330 4.22901 4.30065 4.49718 4.52150 4.57187 4.60749 4.63622 4.67420 4.74827 4.75979 4.79735 4.80480 4.86533 5.02766 5.06808 5.09512 5.10013 5.14518 5.19632 5.22207 5.25358 5.38410 5.39773 5.51357 5.52674 5.54890 5.64336 5.71088 5.72755 5.76185 6.16586 6.28472 6.66010 7.33982 7.36033 8.12071 8.37342 9.28555 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.001983 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.831063 B =14118.887580 C =14818.805303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.083 4.083 7 C -0.096 4.096 8 C 0.513 3.487 9 O -0.581 6.581 10 N -0.703 5.703 11 C 0.152 3.848 12 H 0.100 0.900 13 C -0.169 4.169 14 C 0.172 3.828 15 H 0.071 0.929 16 N -0.715 5.715 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.070 4.070 20 N -0.964 5.964 21 Si 0.968 3.032 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.280 1.280 25 C -0.108 4.108 26 C -0.117 4.117 27 C -0.130 4.130 28 C -0.109 4.109 29 C -0.120 4.120 30 C -0.130 4.130 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.412 0.588 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.379 0.621 44 H 0.251 0.749 45 H 0.099 0.901 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.084 0.916 49 H 0.051 0.949 50 H 0.109 0.891 51 H 0.124 0.876 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.901 -16.742 9.547 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.133 4.133 6 C -0.084 4.084 7 C -0.136 4.136 8 C 0.301 3.699 9 O -0.461 6.461 10 N -0.354 5.354 11 C 0.046 3.954 12 H 0.118 0.882 13 C -0.211 4.211 14 C 0.061 3.939 15 H 0.089 0.911 16 N -0.354 5.354 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.263 4.263 20 N -0.615 5.615 21 Si 0.797 3.203 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.206 1.206 25 C -0.110 4.110 26 C -0.154 4.154 27 C -0.168 4.168 28 C -0.147 4.147 29 C -0.138 4.138 30 C -0.148 4.148 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.250 0.750 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.214 0.786 44 H 0.059 0.941 45 H 0.117 0.883 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.102 0.898 49 H 0.070 0.930 50 H 0.128 0.872 51 H 0.142 0.858 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.286 -17.482 9.469 28.405 hybrid contribution 0.968 1.090 -0.976 1.754 sum -19.319 -16.392 8.493 26.722 Atomic orbital electron populations 1.21715 0.93902 1.02381 1.01958 1.20586 0.96791 0.91502 1.03326 1.20181 0.98835 0.97162 0.93101 1.21230 1.00228 0.94882 0.98286 1.21214 0.98888 0.95373 0.97805 1.19485 0.99502 0.95646 0.93736 1.20736 0.89743 0.95475 1.07622 1.21137 0.90925 0.83161 0.74720 1.90702 1.71471 1.32805 1.51091 1.45864 1.06394 1.08946 1.74244 1.21826 0.79798 0.97713 0.96079 0.88244 1.24103 0.99968 0.99774 0.97284 1.21353 0.93757 0.87056 0.91711 0.91148 1.42406 1.19860 1.09856 1.63306 1.19604 0.96048 0.96288 1.25670 0.91089 1.25449 1.01555 0.96138 1.03143 1.69781 1.37516 1.02905 1.51273 0.85302 0.80134 0.76260 0.78592 1.20832 1.22137 1.20604 1.23333 0.97450 0.94665 0.95555 1.22712 1.01289 0.96553 0.94877 1.22643 0.99148 0.96340 0.98631 1.22477 0.98541 0.95171 0.98516 1.21202 0.99200 0.95495 0.97875 1.21206 1.00433 0.94826 0.98368 0.92702 0.92919 0.91189 0.90740 0.90468 0.84678 0.85069 0.85107 0.85936 0.75035 0.93179 0.91104 0.78608 0.94068 0.88297 0.92333 0.92800 0.89785 0.93012 0.87246 0.85812 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.08 -1.11 6.06 29.85 0.18 -0.93 16 3 C -0.09 -1.69 5.13 -19.86 -0.10 -1.79 16 4 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 5 C -0.11 -2.25 9.70 22.27 0.22 -2.03 16 6 C -0.08 -1.71 4.37 -19.87 -0.09 -1.80 16 7 C -0.10 -1.59 5.83 29.10 0.17 -1.42 16 8 C 0.51 12.67 7.82 87.65 0.69 13.35 16 9 O -0.58 -19.90 15.66 -3.04 -0.05 -19.95 16 10 N -0.70 -16.26 5.28 -441.15 -2.33 -18.59 16 11 C 0.15 4.44 4.09 45.28 0.19 4.63 16 12 H 0.10 3.17 7.51 -2.39 -0.02 3.15 16 13 C -0.17 -6.03 7.68 31.23 0.24 -5.79 16 14 C 0.17 6.74 4.36 45.35 0.20 6.94 16 15 H 0.07 2.85 8.12 -2.39 -0.02 2.83 16 16 N -0.72 -34.96 5.36 -321.27 -1.72 -36.68 16 17 C -0.24 -13.44 9.98 84.03 0.84 -12.60 16 18 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 19 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 20 N -0.96 -57.74 13.06 21.65 0.28 -57.46 16 21 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 C -0.11 -3.24 1.07 -52.24 -0.06 -3.29 16 26 C -0.12 -3.13 7.85 30.88 0.24 -2.88 16 27 C -0.13 -3.68 8.08 31.23 0.25 -3.43 16 28 C -0.11 -3.01 6.77 30.88 0.21 -2.80 16 29 C -0.12 -2.52 9.70 22.27 0.22 -2.31 16 30 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.91 8.09 -2.39 -0.02 0.90 16 35 H 0.08 0.91 8.09 -2.38 -0.02 0.89 16 36 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.13 1.37 8.09 -2.39 -0.02 1.35 16 39 H 0.12 1.52 8.08 -2.39 -0.02 1.50 16 40 H 0.41 7.38 6.97 -92.71 -0.65 6.73 16 41 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.38 19.50 5.87 -92.71 -0.54 18.96 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 48 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.05 1.75 6.43 -2.39 -0.02 1.74 16 50 H 0.11 2.17 6.98 -2.39 -0.02 2.15 16 51 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 52 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -70.48 419.39 2.94 -67.55 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: -0.28 Total: 41.98 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 5.00 Total: -24.98 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -3.77 Total: -112.73 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.48 2.94 -67.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.835 kcal (2) G-P(sol) polarization free energy of solvation -70.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds