Wall clock time and date at job start Wed Apr 1 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47359 * 2 1 4 4 C 1.38249 * 120.00109 * 264.98096 * 3 2 1 5 5 C 1.38211 * 120.00390 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99708 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00245 * 359.81345 * 6 5 4 8 8 C 1.38217 * 119.99695 * 84.99870 * 3 2 1 9 9 C 1.50698 * 120.00037 * 359.97438 * 8 3 2 10 10 H 1.08994 * 115.55314 * 334.32632 * 9 8 3 11 11 C 1.52998 * 117.51271 * 188.62843 * 9 8 3 12 12 C 1.52995 * 117.49784 * 120.00223 * 9 8 3 13 13 H 1.08998 * 117.50193 * 359.97438 * 12 9 8 14 14 C 1.50699 * 117.49802 * 215.00195 * 12 9 8 15 15 O 1.21285 * 119.99804 * 359.97438 * 14 12 9 16 16 N 1.34777 * 120.00335 * 179.97438 * 14 12 9 17 17 C 1.46497 * 120.00235 * 179.97438 * 16 14 12 18 18 H 1.09001 * 110.91837 * 37.44772 * 17 16 14 19 19 C 1.54909 * 111.00265 * 273.54647 * 17 16 14 20 20 N 1.47427 * 104.83321 * 204.91666 * 19 17 16 21 21 C 1.36941 * 125.64856 * 204.09350 * 20 19 17 22 22 H 1.07996 * 119.99797 * 354.80701 * 21 20 19 23 23 C 1.38814 * 119.99801 * 174.81218 * 21 20 19 24 24 N 1.31622 * 120.00025 * 7.05127 * 23 21 20 25 25 Si 1.86797 * 119.99980 * 187.05721 * 23 21 20 26 26 H 1.48496 * 109.47551 * 94.98082 * 25 23 21 27 27 H 1.48498 * 109.47148 * 214.98647 * 25 23 21 28 28 H 1.48502 * 109.47053 * 334.97956 * 25 23 21 29 29 C 1.47028 * 108.70299 * 24.12871 * 20 19 17 30 30 C 1.54327 * 107.26850 * 358.94021 * 29 20 19 31 31 H 1.09004 * 110.86913 * 96.23962 * 30 29 20 32 32 C 1.52997 * 110.72129 * 219.44356 * 30 29 20 33 33 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47463 * 299.99780 * 1 2 3 35 35 H 1.08999 * 109.47081 * 59.99785 * 1 2 3 36 36 H 1.09005 * 109.47047 * 239.99981 * 2 1 3 37 37 H 1.08999 * 109.47081 * 120.00215 * 2 1 3 38 38 H 1.08002 * 120.00257 * 359.97438 * 4 3 2 39 39 H 1.07995 * 120.00564 * 180.02562 * 5 4 3 40 40 H 1.08007 * 120.00046 * 180.02562 * 6 5 4 41 41 H 1.07999 * 120.00503 * 180.22895 * 7 6 5 42 42 H 1.09001 * 117.49896 * 145.02968 * 11 9 8 43 43 H 1.09000 * 117.50477 * 0.02562 * 11 9 8 44 44 H 0.96999 * 119.99607 * 0.02562 * 16 14 12 45 45 H 1.09002 * 110.36961 * 323.75312 * 19 17 16 46 46 H 1.08995 * 110.37143 * 86.07567 * 19 17 16 47 47 H 0.96995 * 120.00030 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.88079 * 239.52533 * 29 20 19 49 49 H 1.08993 * 110.01336 * 118.43158 * 29 20 19 50 50 H 1.08995 * 109.47451 * 173.52112 * 32 30 29 51 51 H 1.09001 * 109.47021 * 293.52696 * 32 30 29 52 52 H 1.09003 * 109.46882 * 53.52330 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3615 2.0376 -1.1927 5 6 2.8218 3.3408 -1.1928 6 6 2.9525 4.0278 -0.0001 7 6 2.6192 3.4127 1.1919 8 6 2.1643 2.1071 1.1925 9 6 1.8053 1.4347 2.4925 10 1 1.0736 0.6302 2.4194 11 6 1.7782 2.3019 3.7527 12 6 2.9088 1.2927 3.5427 13 1 3.8946 1.6852 3.2932 14 6 2.9010 0.0511 4.3967 15 8 2.0406 -0.7888 4.2377 16 7 3.8500 -0.1260 5.3371 17 6 3.8420 -1.3328 6.1677 18 1 3.5378 -2.2032 5.5865 19 6 2.9321 -1.1474 7.4076 20 7 3.4621 -2.0906 8.4091 21 6 2.7561 -2.6261 9.4532 22 1 1.7445 -2.3000 9.6446 23 6 3.3409 -3.5879 10.2655 24 7 4.6150 -3.8850 10.1212 25 14 2.3195 -4.4607 11.5634 26 1 1.8114 -5.7431 11.0137 27 1 3.1617 -4.7323 12.7559 28 1 1.1735 -3.6002 11.9526 29 6 4.8743 -2.3606 8.1016 30 6 5.2268 -1.5619 6.8290 31 1 5.6943 -0.6109 7.0844 32 6 6.1364 -2.3806 5.9107 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 -0.3633 0.5139 -0.8900 36 1 1.8933 -0.5139 -0.8900 37 1 1.8933 -0.5139 0.8900 38 1 2.2591 1.5011 -2.1244 39 1 3.0786 3.8228 -2.1245 40 1 3.3118 5.0464 -0.0002 41 1 2.7178 3.9506 2.1232 42 1 1.0287 2.0678 4.5087 43 1 2.0197 3.3590 3.6417 44 1 4.5378 0.5459 5.4645 45 1 2.9989 -0.1242 7.7776 46 1 1.8999 -1.3959 7.1613 47 1 5.0235 -4.5573 10.6886 48 1 5.0174 -3.4261 7.9221 49 1 5.5048 -2.0363 8.9293 50 1 6.2789 -1.8472 4.9709 51 1 7.1019 -2.5293 6.3942 52 1 5.6762 -3.3487 5.7127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080344599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:07 Heat of formation + Delta-G solvation = 25.194808 kcal Electronic energy + Delta-G solvation = -29586.679670 eV Core-core repulsion = 25744.807382 eV Total energy + Delta-G solvation = -3841.872289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.53909 -39.47021 -37.78868 -36.25629 -34.41430 -33.99736 -32.35813 -30.83478 -30.73938 -29.56264 -27.65866 -25.79235 -24.82234 -24.14970 -23.98180 -23.06476 -21.29098 -20.68039 -20.18648 -20.09054 -19.25460 -17.54311 -17.00843 -16.55435 -16.11323 -15.68454 -15.26829 -14.84541 -14.64729 -14.26835 -14.24499 -14.04882 -13.75742 -13.67495 -13.41512 -13.10045 -13.00434 -12.73782 -12.48319 -12.42408 -12.21467 -12.05023 -11.95588 -11.61352 -11.60127 -11.30184 -11.10364 -11.05110 -10.90077 -10.85559 -10.75242 -10.60979 -10.52743 -10.19846 -10.03532 -9.82510 -9.75209 -9.55218 -9.02380 -8.72927 -8.67771 -8.55743 -6.82574 -5.71902 -3.04014 1.04420 1.13895 2.62262 3.22324 3.42082 3.46374 3.47917 3.49406 3.88647 4.34519 4.50267 4.53040 4.57017 4.64525 4.72038 4.76280 4.93624 4.96230 5.04319 5.16760 5.19550 5.27658 5.29308 5.37221 5.39184 5.48220 5.53706 5.56041 5.66737 5.73624 5.77576 5.78509 5.80395 5.86768 5.95476 5.97074 6.08616 6.08996 6.16035 6.26019 6.29494 6.37821 6.44981 6.47102 6.59829 6.64838 6.71854 6.75614 7.01860 7.53119 7.61265 7.73787 7.83864 8.25283 8.44242 9.22364 9.82455 10.48034 11.40322 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.002135 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.434107 B =13113.233806 C =13452.987419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.068 4.068 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.049 4.049 9 C -0.087 4.087 10 H 0.130 0.870 11 C -0.145 4.145 12 C -0.175 4.175 13 H 0.122 0.878 14 C 0.540 3.460 15 O -0.538 6.538 16 N -0.711 5.711 17 C 0.133 3.867 18 H 0.094 0.906 19 C 0.129 3.871 20 N -0.604 5.604 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.184 3.816 30 C -0.124 4.124 31 H 0.069 0.931 32 C -0.134 4.134 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.397 0.603 45 H 0.018 0.982 46 H 0.043 0.957 47 H 0.252 0.748 48 H 0.053 0.947 49 H 0.043 0.957 50 H 0.044 0.956 51 H 0.055 0.945 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 15.599 -22.361 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.106 4.106 10 H 0.148 0.852 11 C -0.182 4.182 12 C -0.196 4.196 13 H 0.140 0.860 14 C 0.325 3.675 15 O -0.415 6.415 16 N -0.360 5.360 17 C 0.029 3.971 18 H 0.112 0.888 19 C 0.002 3.998 20 N -0.331 5.331 21 C -0.355 4.355 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.059 3.941 30 C -0.144 4.144 31 H 0.087 0.913 32 C -0.191 4.191 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.231 0.769 45 H 0.036 0.964 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.383 14.809 -22.273 26.782 hybrid contribution 0.047 -0.038 0.799 0.802 sum -1.336 14.771 -21.474 26.098 Atomic orbital electron populations 1.21738 0.94548 1.02005 1.02033 1.20610 0.96415 0.92478 1.03357 1.19751 0.98409 0.96295 0.92352 1.21027 0.99948 0.95183 0.97399 1.21120 1.00038 0.94826 0.98049 1.21086 1.00684 0.99908 0.92522 1.21064 0.99592 0.94493 0.98373 1.18999 0.99372 0.93687 0.92837 1.21128 1.00544 1.01854 0.87040 0.85200 1.23132 0.99332 0.96284 0.99493 1.22356 0.96780 0.98113 1.02355 0.85957 1.19541 0.81413 0.86541 0.79972 1.90711 1.37001 1.44499 1.69329 1.45925 1.30354 1.23500 1.36272 1.22368 0.96977 0.86622 0.91181 0.88842 1.21828 0.96308 0.93452 0.88220 1.44386 1.07895 1.51650 1.29144 1.19070 0.96442 1.16069 1.03906 0.90388 1.24822 0.96292 0.99397 0.99885 1.69958 1.09716 1.35387 1.41788 0.86106 0.79103 0.79944 0.80690 1.21575 1.21788 1.20629 1.21232 0.85270 0.97218 0.90363 1.22761 0.93708 0.99840 0.98111 0.91271 1.21687 0.99447 0.99933 0.98072 0.92173 0.92294 0.92821 0.91183 0.90092 0.86127 0.86245 0.86170 0.85838 0.87566 0.87539 0.76891 0.96405 0.93824 0.93743 0.92861 0.93898 0.93696 0.92581 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.74 37.15 0.36 -0.91 16 2 C -0.09 -0.85 5.38 -27.89 -0.15 -1.00 16 3 C -0.07 -0.66 5.13 -104.63 -0.54 -1.20 16 4 C -0.12 -1.00 9.68 -39.59 -0.38 -1.39 16 5 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 6 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 7 C -0.12 -1.01 9.30 -39.58 -0.37 -1.38 16 8 C -0.05 -0.48 5.61 -104.62 -0.59 -1.07 16 9 C -0.09 -0.92 4.66 -91.78 -0.43 -1.35 16 10 H 0.13 1.59 5.47 -51.93 -0.28 1.30 16 11 C -0.15 -1.36 9.56 -26.73 -0.26 -1.62 16 12 C -0.17 -1.88 5.83 -91.78 -0.53 -2.42 16 13 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.54 7.94 7.61 -10.99 -0.08 7.86 16 15 O -0.54 -10.08 16.00 5.55 0.09 -10.00 16 16 N -0.71 -10.15 5.23 -51.73 -0.27 -10.42 16 17 C 0.13 2.43 2.76 -65.78 -0.18 2.25 16 18 H 0.09 1.91 7.64 -51.93 -0.40 1.51 16 19 C 0.13 2.83 6.93 -2.53 -0.02 2.81 16 20 N -0.60 -15.73 3.40 -170.07 -0.58 -16.30 16 21 C -0.23 -6.45 10.27 -15.06 -0.15 -6.61 16 22 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 23 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 24 N -0.92 -27.08 10.36 55.49 0.57 -26.51 16 25 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.18 4.41 4.98 -3.06 -0.02 4.40 16 30 C -0.12 -2.23 3.17 -88.78 -0.28 -2.51 16 31 H 0.07 1.13 7.99 -51.93 -0.42 0.71 16 32 C -0.13 -2.08 9.16 37.16 0.34 -1.74 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.55 7.17 -51.93 -0.37 0.18 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 37 H 0.08 0.88 6.94 -51.93 -0.36 0.52 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.86 6.02 -52.49 -0.32 0.54 16 42 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.11 0.76 6.17 -51.93 -0.32 0.44 16 44 H 0.40 4.49 8.51 -40.82 -0.35 4.15 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.05 1.41 6.92 -51.93 -0.36 1.05 16 49 H 0.04 1.13 7.61 -51.93 -0.40 0.74 16 50 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 LS Contribution 413.22 15.07 6.23 6.23 Total: -1.00 -32.70 413.22 -11.75 -44.45 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.60 Total: 4.07 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -4.17 Total: -8.90 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.27 Total: -53.23 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.70 -11.75 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080344599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.640 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds