Wall clock time and date at job start Wed Apr 1 2020 01:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38253 * 120.00471 * 2 1 4 4 C 1.38210 * 120.00403 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99870 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99776 * 179.97438 * 5 4 3 7 7 H 1.09007 * 115.55157 * 154.41474 * 6 5 4 8 8 C 1.52998 * 117.50249 * 8.74178 * 6 5 4 9 9 C 1.53007 * 117.50159 * 300.08188 * 6 5 4 10 10 H 1.08997 * 117.49361 * 0.02705 * 9 6 5 11 11 C 1.50693 * 117.49867 * 215.00698 * 9 6 5 12 12 O 1.21281 * 120.00404 * 0.02562 * 11 9 6 13 13 N 1.34776 * 120.00055 * 179.97438 * 11 9 6 14 14 C 1.46500 * 120.00490 * 179.97438 * 13 11 9 15 15 H 1.09004 * 110.64053 * 36.69210 * 14 13 11 16 16 C 1.54318 * 110.72188 * 273.55074 * 14 13 11 17 17 N 1.47026 * 107.27289 * 219.44257 * 16 14 13 18 18 C 1.36937 * 125.64971 * 178.90507 * 17 16 14 19 19 H 1.08003 * 119.99657 * 174.87990 * 18 17 16 20 20 C 1.38809 * 119.99874 * 354.87204 * 18 17 16 21 21 N 1.31622 * 120.00111 * 7.06898 * 20 18 17 22 22 Si 1.86804 * 119.99775 * 187.06281 * 20 18 17 23 23 H 1.48498 * 109.46777 * 94.99027 * 22 20 18 24 24 H 1.48498 * 109.46883 * 214.98936 * 22 20 18 25 25 H 1.48500 * 109.47254 * 334.99259 * 22 20 18 26 26 C 1.47427 * 108.70043 * 358.94087 * 17 16 14 27 27 C 1.54906 * 104.83458 * 24.12562 * 26 17 16 28 28 H 1.09000 * 111.00226 * 81.06383 * 27 26 17 29 29 C 1.52993 * 111.00663 * 204.91886 * 27 26 17 30 30 C 1.38215 * 119.99685 * 0.24846 * 5 4 3 31 31 C 1.38219 * 119.99949 * 179.97438 * 2 1 3 32 32 C 1.50707 * 119.99806 * 359.97438 * 31 2 1 33 33 H 1.09002 * 109.47675 * 89.99794 * 1 2 3 34 34 H 1.08998 * 109.47393 * 210.00243 * 1 2 3 35 35 H 1.09001 * 109.46812 * 329.99989 * 1 2 3 36 36 H 1.08002 * 119.99649 * 359.97438 * 3 2 1 37 37 H 1.08003 * 120.00073 * 179.97438 * 4 3 2 38 38 H 1.08993 * 117.50014 * 359.97438 * 8 6 5 39 39 H 1.09009 * 117.49758 * 144.99891 * 8 6 5 40 40 H 0.97009 * 119.99704 * 0.02562 * 13 11 9 41 41 H 1.09000 * 109.88387 * 338.85683 * 16 14 13 42 42 H 1.08995 * 109.88466 * 99.87022 * 16 14 13 43 43 H 0.96994 * 119.99805 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.36921 * 142.97403 * 26 17 16 45 45 H 1.09007 * 110.36543 * 265.29216 * 26 17 16 46 46 H 1.09005 * 109.47488 * 172.20198 * 29 27 26 47 47 H 1.09001 * 109.47180 * 292.19831 * 29 27 26 48 48 H 1.08995 * 109.47288 * 52.19660 * 29 27 26 49 49 H 1.08003 * 119.99491 * 179.72693 * 30 5 4 50 50 H 1.08992 * 109.47236 * 89.99804 * 32 31 2 51 51 H 1.09000 * 109.46777 * 210.00222 * 32 31 2 52 52 H 1.09003 * 109.46984 * 329.99846 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 5.7786 -0.0002 0.0005 7 1 6.2488 -0.8872 0.4252 8 6 6.4851 1.3411 0.2068 9 6 6.4851 0.6801 -1.1738 10 1 5.8599 1.1280 -1.9461 11 6 7.7776 0.0725 -1.6548 12 8 8.2196 -0.9192 -1.1143 13 7 8.4418 0.6305 -2.6862 14 6 9.6986 0.0402 -3.1535 15 1 9.6579 -1.0475 -3.0935 16 6 10.8930 0.5873 -2.3439 17 7 12.0016 0.7942 -3.2873 18 6 13.2377 1.2907 -2.9697 19 1 14.0136 1.3281 -3.7200 20 6 13.4932 1.7462 -1.6836 21 7 12.5976 1.5742 -0.7345 22 14 15.1081 2.6030 -1.2998 23 1 14.9252 4.0731 -1.4032 24 1 15.5388 2.2534 0.0776 25 1 16.1441 2.1638 -2.2690 26 6 11.5618 0.3792 -4.6318 27 6 10.0180 0.5025 -4.5997 28 1 9.7051 1.5345 -4.7580 29 6 9.3720 -0.4280 -5.6282 30 6 3.5805 -1.1971 -0.0052 31 6 2.1980 -1.1970 0.0005 32 6 1.4444 -2.5021 0.0017 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3634 -0.8899 0.5139 35 1 -0.3633 0.8900 0.5138 36 1 1.6583 2.1326 -0.0004 37 1 4.1204 2.1326 0.0001 38 1 5.8600 2.2237 0.3421 39 1 7.4201 1.3366 0.7672 40 1 8.0881 1.4235 -3.1188 41 1 10.6219 1.5343 -1.8772 42 1 11.1836 -0.1329 -1.5792 43 1 12.7763 1.8921 0.1643 44 1 11.9797 1.0424 -5.3892 45 1 11.8560 -0.6523 -4.8257 46 1 8.2906 -0.4258 -5.4915 47 1 9.6118 -0.0810 -6.6332 48 1 9.7534 -1.4400 -5.4926 49 1 4.1205 -2.1324 -0.0096 50 1 1.2623 -2.8175 -1.0256 51 1 2.0337 -3.2614 0.5159 52 1 0.4922 -2.3714 0.5159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080584924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:37 Heat of formation + Delta-G solvation = 25.987208 kcal Electronic energy + Delta-G solvation = -29276.912602 eV Core-core repulsion = 25435.074674 eV Total energy + Delta-G solvation = -3841.837928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.33217 -39.43712 -37.83848 -36.41629 -33.84061 -33.01251 -32.55669 -32.29956 -30.36433 -28.20646 -27.86616 -26.62202 -25.64440 -24.41041 -23.04386 -22.85958 -22.22934 -20.51492 -19.95692 -19.57502 -19.20372 -17.35293 -16.88167 -16.28194 -15.92146 -15.71759 -15.00819 -14.90517 -14.54436 -14.40805 -14.32092 -13.85150 -13.55436 -13.33017 -13.22873 -13.07854 -12.92980 -12.77679 -12.69467 -12.35564 -12.33344 -12.16567 -11.99724 -11.87033 -11.68861 -11.34088 -11.22679 -11.03285 -10.99810 -10.78181 -10.71105 -10.50766 -10.42246 -10.34049 -9.97227 -9.90718 -9.68503 -9.44852 -8.89665 -8.59072 -8.48178 -8.41611 -6.81081 -5.68446 -3.02570 1.10338 1.22497 2.82667 3.34479 3.41593 3.46474 3.49134 3.60394 4.04568 4.44290 4.52181 4.55896 4.66224 4.75990 4.80264 4.87232 4.97053 5.00655 5.10550 5.13468 5.22334 5.23284 5.31947 5.39172 5.42272 5.46926 5.52510 5.56421 5.56571 5.61679 5.69432 5.78145 5.90690 5.94380 6.00430 6.01242 6.03931 6.05755 6.16859 6.22030 6.30428 6.37272 6.45491 6.51377 6.52620 6.64366 6.82154 6.85468 6.96829 7.57592 7.63992 7.87421 7.96994 8.27745 8.65202 9.23337 9.84267 10.49830 11.42450 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002155 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.910985 B =12988.679629 C =13889.110639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.115 4.115 4 C -0.122 4.122 5 C -0.048 4.048 6 C -0.087 4.087 7 H 0.127 0.873 8 C -0.143 4.143 9 C -0.174 4.174 10 H 0.121 0.879 11 C 0.541 3.459 12 O -0.538 6.538 13 N -0.708 5.708 14 C 0.121 3.879 15 H 0.085 0.915 16 C 0.173 3.827 17 N -0.606 5.606 18 C -0.231 4.231 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.141 3.859 27 C -0.113 4.113 28 H 0.077 0.923 29 C -0.137 4.137 30 C -0.106 4.106 31 C -0.086 4.086 32 C -0.117 4.117 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.396 0.604 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.252 0.748 44 H 0.042 0.958 45 H 0.021 0.979 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.124 0.876 50 H 0.069 0.931 51 H 0.066 0.934 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.125 -2.000 -1.553 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.140 4.140 5 C -0.048 4.048 6 C -0.106 4.106 7 H 0.144 0.856 8 C -0.180 4.180 9 C -0.195 4.195 10 H 0.139 0.861 11 C 0.327 3.673 12 O -0.415 6.415 13 N -0.358 5.358 14 C 0.016 3.984 15 H 0.103 0.897 16 C 0.047 3.953 17 N -0.333 5.333 18 C -0.359 4.359 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.014 3.986 27 C -0.133 4.133 28 H 0.096 0.904 29 C -0.195 4.195 30 C -0.124 4.124 31 C -0.086 4.086 32 C -0.174 4.174 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.229 0.771 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.142 0.858 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.665 -2.655 -0.977 24.827 hybrid contribution 0.796 1.000 0.005 1.278 sum -23.869 -1.656 -0.972 23.946 Atomic orbital electron populations 1.20838 0.91482 1.02695 1.02212 1.19739 0.95859 0.92729 1.01208 1.20956 0.94015 0.97356 1.00932 1.21051 0.94086 0.97787 1.01030 1.19129 0.93038 0.93232 0.99433 1.21066 0.90122 0.98555 1.00824 0.85554 1.23150 1.03025 0.95815 0.96043 1.22346 0.97666 1.05959 0.93504 0.86123 1.19469 0.84285 0.83764 0.79786 1.90702 1.68612 1.25944 1.56244 1.45837 1.24309 1.31242 1.34382 1.22480 0.84169 0.97983 0.93737 0.89656 1.21472 0.83776 0.99511 0.90517 1.44423 1.11378 1.75466 1.02010 1.19051 0.87665 1.33493 0.95700 0.90321 1.24852 0.98340 1.01237 0.95969 1.69999 1.34444 1.50527 1.01347 0.86124 0.82806 0.79570 0.77433 1.21667 1.21783 1.20622 1.21593 0.90266 0.97299 0.89420 1.22605 0.97825 0.99261 0.93636 0.90444 1.21699 0.99869 0.99558 0.98380 1.20878 0.93251 0.97819 1.00475 1.19726 0.93540 0.94891 1.00426 1.20858 1.00022 0.94135 1.02351 0.91307 0.91258 0.91761 0.86161 0.85804 0.87627 0.87294 0.77064 0.93034 0.93668 0.93767 0.93938 0.96107 0.93124 0.92789 0.92611 0.85836 0.91183 0.91530 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.61 36.00 0.35 -0.39 16 2 C -0.10 -0.86 5.88 -104.63 -0.62 -1.48 16 3 C -0.11 -1.05 9.70 -39.59 -0.38 -1.43 16 4 C -0.12 -1.21 9.30 -39.58 -0.37 -1.58 16 5 C -0.05 -0.54 5.61 -104.62 -0.59 -1.13 16 6 C -0.09 -1.09 5.55 -91.77 -0.51 -1.60 16 7 H 0.13 1.78 7.67 -51.93 -0.40 1.39 16 8 C -0.14 -1.71 9.57 -26.70 -0.26 -1.96 16 9 C -0.17 -2.23 5.82 -91.73 -0.53 -2.77 16 10 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.54 9.26 7.61 -10.99 -0.08 9.18 16 12 O -0.54 -11.47 15.98 5.56 0.09 -11.38 16 13 N -0.71 -11.59 5.13 -52.03 -0.27 -11.86 16 14 C 0.12 2.35 2.70 -66.10 -0.18 2.17 16 15 H 0.09 1.77 7.59 -51.93 -0.39 1.38 16 16 C 0.17 4.35 5.13 -3.07 -0.02 4.34 16 17 N -0.61 -15.72 3.39 -170.07 -0.58 -16.30 16 18 C -0.23 -6.53 10.27 -15.06 -0.15 -6.69 16 19 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 20 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 21 N -0.92 -27.65 10.36 55.49 0.57 -27.08 16 22 Si 0.91 22.43 29.56 -169.99 -5.02 17.40 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.14 2.89 6.70 -2.53 -0.02 2.88 16 27 C -0.11 -1.91 3.25 -88.48 -0.29 -2.20 16 28 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 29 C -0.14 -1.85 9.31 37.15 0.35 -1.50 16 30 C -0.11 -1.15 9.39 -39.59 -0.37 -1.53 16 31 C -0.09 -0.82 5.88 -104.62 -0.62 -1.44 16 32 C -0.12 -0.83 9.60 36.01 0.35 -0.49 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.38 5.95 -51.93 -0.31 0.07 16 35 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.12 1.06 6.03 -52.48 -0.32 0.74 16 38 H 0.11 1.00 6.18 -51.93 -0.32 0.68 16 39 H 0.11 1.48 8.14 -51.92 -0.42 1.06 16 40 H 0.40 5.29 8.52 -40.82 -0.35 4.94 16 41 H 0.05 1.42 7.18 -51.93 -0.37 1.05 16 42 H 0.05 1.33 7.61 -51.93 -0.40 0.93 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.43 7.98 -51.93 -0.41 0.02 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 49 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 52 H 0.07 0.40 5.95 -51.93 -0.31 0.10 16 LS Contribution 414.27 15.07 6.24 6.24 Total: -1.00 -33.88 414.27 -11.60 -45.48 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.60 Total: 5.41 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -4.04 Total: -7.92 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.27 Total: -55.23 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.88 -11.60 -45.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080584924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.467 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds