Wall clock time and date at job start Wed Apr 1 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46818 * 2 1 4 4 C 1.38261 * 120.00089 * 264.97527 * 3 2 1 5 5 C 1.38211 * 120.00022 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00113 * 359.78451 * 5 4 3 7 7 C 1.38211 * 119.99784 * 0.49766 * 6 5 4 8 8 C 1.38214 * 120.00249 * 84.99795 * 3 2 1 9 9 C 1.50703 * 119.99514 * 359.97438 * 8 3 2 10 10 H 1.08999 * 115.55305 * 334.29614 * 9 8 3 11 11 C 1.53006 * 117.49226 * 188.63106 * 9 8 3 12 12 C 1.53000 * 117.49905 * 120.00971 * 9 8 3 13 13 H 1.08998 * 117.49698 * 359.97438 * 12 9 8 14 14 C 1.50695 * 117.49802 * 214.97142 * 12 9 8 15 15 O 1.21285 * 120.00019 * 0.02562 * 14 12 9 16 16 N 1.34778 * 119.99969 * 179.97438 * 14 12 9 17 17 C 1.47431 * 125.64599 * 180.02562 * 16 14 12 18 18 C 1.54911 * 104.82733 * 204.09026 * 17 16 14 19 19 H 1.09006 * 111.00530 * 81.06467 * 18 17 16 20 20 C 1.52995 * 111.00300 * 204.87260 * 18 17 16 21 21 C 1.55154 * 101.58419 * 322.99085 * 18 17 16 22 22 H 1.09000 * 110.72026 * 276.95881 * 21 18 17 23 23 N 1.46498 * 110.72097 * 153.86478 * 21 18 17 24 24 C 1.36942 * 119.99914 * 154.99811 * 23 21 18 25 25 H 1.07996 * 120.00218 * 0.02562 * 24 23 21 26 26 C 1.38809 * 119.99909 * 179.97438 * 24 23 21 27 27 N 1.31625 * 120.00238 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 119.99945 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47078 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.47299 * 120.00078 * 28 26 24 31 31 H 1.48507 * 109.47262 * 240.00353 * 28 26 24 32 32 C 1.47023 * 125.64764 * 359.69558 * 16 14 12 33 33 H 1.08996 * 109.46648 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47176 * 300.00267 * 1 2 3 35 35 H 1.08999 * 109.47027 * 60.00334 * 1 2 3 36 36 H 1.09000 * 109.47327 * 240.00261 * 2 1 3 37 37 H 1.08999 * 109.47027 * 119.99666 * 2 1 3 38 38 H 1.08001 * 119.99615 * 359.97438 * 4 3 2 39 39 H 1.08004 * 119.99459 * 180.02562 * 5 4 3 40 40 H 1.07998 * 119.99823 * 180.25416 * 6 5 4 41 41 H 1.08002 * 120.00200 * 179.76459 * 7 6 5 42 42 H 1.08992 * 117.50347 * 359.97438 * 11 9 8 43 43 H 1.09001 * 117.49511 * 145.02318 * 11 9 8 44 44 H 1.08997 * 110.36251 * 322.92543 * 17 16 14 45 45 H 1.08999 * 110.36763 * 85.25571 * 17 16 14 46 46 H 1.09001 * 109.47286 * 58.55348 * 20 18 17 47 47 H 1.09004 * 109.47458 * 178.54603 * 20 18 17 48 48 H 1.09002 * 109.47589 * 298.55037 * 20 18 17 49 49 H 0.97006 * 120.00251 * 335.00193 * 23 21 18 50 50 H 0.96998 * 120.00248 * 179.97438 * 27 26 24 51 51 H 1.08999 * 109.88492 * 298.39154 * 32 16 14 52 52 H 1.09000 * 109.88114 * 59.56206 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0377 -1.1928 5 6 2.8217 3.3410 -1.1928 6 6 2.9485 4.0294 -0.0005 7 6 2.6249 3.4108 1.1923 8 6 2.1642 2.1072 1.1924 9 6 1.8052 1.4349 2.4925 10 1 1.0732 0.6306 2.4194 11 6 1.7781 2.3025 3.7524 12 6 2.9087 1.2931 3.5427 13 1 3.8944 1.6858 3.2932 14 6 2.9007 0.0519 4.3973 15 8 2.0407 -0.7884 4.2380 16 7 3.8497 -0.1249 5.3378 17 6 3.9605 -1.2866 6.2388 18 6 4.7478 -0.7629 7.4658 19 1 4.0915 -0.2268 8.1514 20 6 5.4692 -1.9058 8.1830 21 6 5.7613 0.2027 6.7968 22 1 6.6255 -0.3450 6.4210 23 7 6.1798 1.2467 7.7355 24 6 7.3883 1.8698 7.5723 25 1 8.0327 1.5918 6.7514 26 6 7.7846 2.8593 8.4614 27 7 6.9991 3.1984 9.4616 28 14 9.4334 3.7087 8.2392 29 1 10.1219 3.1493 7.0483 30 1 9.2179 5.1654 8.0470 31 1 10.2710 3.4871 9.4453 32 6 4.9497 0.8055 5.6306 33 1 -0.3632 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 2.2592 1.5011 -2.1244 39 1 3.0785 3.8229 -2.1246 40 1 3.3041 5.0491 -0.0010 41 1 2.7275 3.9472 2.1241 42 1 2.0203 3.3593 3.6411 43 1 1.0286 2.0686 4.5085 44 1 2.9705 -1.6281 6.5409 45 1 4.5090 -2.0931 5.7522 46 1 6.1502 -2.3981 7.4887 47 1 6.0348 -1.5068 9.0251 48 1 4.7367 -2.6267 8.5462 49 1 5.6009 1.4966 8.4726 50 1 7.2762 3.8897 10.0831 51 1 5.5854 0.9162 4.7521 52 1 4.5470 1.7750 5.9240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082709801.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:04 Heat of formation + Delta-G solvation = 15.140937 kcal Electronic energy + Delta-G solvation = -29758.686797 eV Core-core repulsion = 25916.378539 eV Total energy + Delta-G solvation = -3842.308257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -40.49419 -39.55186 -37.87249 -36.15861 -34.35486 -34.08817 -32.48757 -30.80397 -30.65109 -29.49134 -27.55550 -26.82770 -24.42527 -24.06399 -23.93641 -23.30510 -21.39623 -21.18131 -20.26243 -19.95896 -18.76870 -17.41016 -17.18798 -16.53428 -16.03307 -15.81324 -15.25903 -15.13332 -14.71449 -14.25193 -14.13121 -14.00944 -13.67505 -13.59547 -13.34753 -13.25761 -13.14979 -12.83589 -12.51965 -12.47113 -12.32422 -12.04594 -11.97326 -11.87713 -11.58123 -11.50324 -11.17640 -11.06614 -11.04343 -10.93481 -10.76410 -10.64512 -10.61532 -10.46991 -10.25950 -10.01415 -9.82552 -9.66159 -9.03926 -8.91882 -8.60571 -8.33607 -7.12859 -5.88609 -3.19471 1.14671 1.24544 2.64229 3.14233 3.36352 3.42819 3.44621 3.52325 3.99086 4.37674 4.49814 4.59380 4.65145 4.72323 4.78062 4.86783 4.89558 5.01403 5.06351 5.12397 5.16660 5.22348 5.23625 5.36112 5.37157 5.43716 5.54221 5.59957 5.61731 5.71759 5.75560 5.79927 5.81662 5.86829 5.87354 5.90159 5.95267 5.98392 6.02929 6.11569 6.17987 6.23738 6.36423 6.36814 6.39585 6.47408 6.55240 6.56190 6.60609 6.84482 6.86087 7.60290 7.78971 8.28395 8.35911 9.40896 9.94509 10.29482 11.33274 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010889 B = 0.002802 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.811143 B = 9991.452979 C =11907.177741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.071 4.071 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.049 4.049 9 C -0.088 4.088 10 H 0.128 0.872 11 C -0.143 4.143 12 C -0.169 4.169 13 H 0.124 0.876 14 C 0.557 3.443 15 O -0.555 6.555 16 N -0.608 5.608 17 C 0.114 3.886 18 C -0.115 4.115 19 H 0.083 0.917 20 C -0.132 4.132 21 C 0.177 3.823 22 H 0.068 0.932 23 N -0.711 5.711 24 C -0.247 4.247 25 H 0.073 0.927 26 C -0.008 4.008 27 N -0.929 5.929 28 Si 0.907 3.093 29 H -0.279 1.279 30 H -0.291 1.291 31 H -0.291 1.291 32 C 0.073 3.927 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.049 0.951 49 H 0.387 0.613 50 H 0.256 0.744 51 H 0.058 0.942 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 -4.071 -17.390 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.071 4.071 4 C -0.137 4.137 5 C -0.141 4.141 6 C -0.140 4.140 7 C -0.133 4.133 8 C -0.049 4.049 9 C -0.106 4.106 10 H 0.146 0.854 11 C -0.180 4.180 12 C -0.190 4.190 13 H 0.142 0.858 14 C 0.345 3.655 15 O -0.434 6.434 16 N -0.340 5.340 17 C -0.009 4.009 18 C -0.135 4.135 19 H 0.101 0.899 20 C -0.190 4.190 21 C 0.065 3.935 22 H 0.086 0.914 23 N -0.350 5.350 24 C -0.378 4.378 25 H 0.091 0.909 26 C -0.205 4.205 27 N -0.576 5.576 28 Si 0.737 3.263 29 H -0.205 1.205 30 H -0.218 1.218 31 H -0.218 1.218 32 C -0.053 4.053 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.221 0.779 50 H 0.066 0.934 51 H 0.077 0.923 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.310 -4.427 -17.539 21.333 hybrid contribution 0.938 0.865 0.125 1.282 sum -10.372 -3.562 -17.413 20.579 Atomic orbital electron populations 1.21738 0.94661 1.01800 1.02073 1.20590 0.96307 0.92610 1.03211 1.19717 0.98768 0.96191 0.92378 1.21003 1.00135 0.95212 0.97306 1.21119 1.00062 0.94820 0.98057 1.21108 1.00464 0.99974 0.92472 1.21106 0.99196 0.94522 0.98503 1.18992 0.99367 0.93741 0.92787 1.21131 1.00583 1.01800 0.87131 0.85388 1.23114 0.99148 0.96581 0.99160 1.22292 0.97015 0.97853 1.01798 0.85776 1.19221 0.80235 0.86614 0.79406 1.90651 1.37758 1.45324 1.69717 1.48426 1.28028 1.22726 1.34806 1.22264 1.00480 0.88340 0.89811 1.22655 0.97664 0.97443 0.95702 0.89876 1.21595 0.99723 0.96866 1.00824 1.21249 0.93767 0.89416 0.89089 0.91390 1.42365 1.20536 1.41635 1.30476 1.19289 0.94604 1.14270 1.09675 0.90936 1.24762 0.98569 0.99553 0.97583 1.69670 1.37040 1.33904 1.16990 0.86134 0.83480 0.79302 0.77340 1.20455 1.21787 1.21776 1.23356 0.87801 0.93853 1.00325 0.92336 0.92308 0.92798 0.91241 0.90224 0.86196 0.86246 0.86067 0.85692 0.87385 0.87786 0.90996 0.91693 0.92819 0.91400 0.93217 0.77873 0.93385 0.92331 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.74 37.16 0.36 -0.92 16 2 C -0.09 -0.88 5.38 -27.88 -0.15 -1.03 16 3 C -0.07 -0.76 5.13 -104.62 -0.54 -1.30 16 4 C -0.12 -1.15 9.68 -39.58 -0.38 -1.53 16 5 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 6 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 7 C -0.12 -1.24 9.30 -39.58 -0.37 -1.61 16 8 C -0.05 -0.56 5.61 -104.62 -0.59 -1.15 16 9 C -0.09 -1.07 4.66 -91.77 -0.43 -1.49 16 10 H 0.13 1.65 5.47 -51.93 -0.28 1.37 16 11 C -0.14 -1.67 9.56 -26.72 -0.26 -1.92 16 12 C -0.17 -2.27 5.17 -91.77 -0.47 -2.75 16 13 H 0.12 1.64 7.74 -51.93 -0.40 1.24 16 14 C 0.56 9.02 7.63 -10.99 -0.08 8.93 16 15 O -0.56 -10.25 16.51 5.55 0.09 -10.16 16 16 N -0.61 -9.73 3.33 -170.51 -0.57 -10.30 16 17 C 0.11 1.70 6.37 -2.52 -0.02 1.68 16 18 C -0.11 -1.79 3.27 -88.47 -0.29 -2.08 16 19 H 0.08 1.38 8.01 -51.93 -0.42 0.96 16 20 C -0.13 -1.85 9.30 37.16 0.35 -1.50 16 21 C 0.18 3.23 3.08 -66.09 -0.20 3.03 16 22 H 0.07 1.26 7.96 -51.93 -0.41 0.84 16 23 N -0.71 -16.34 5.15 -51.65 -0.27 -16.61 16 24 C -0.25 -6.39 9.96 -15.06 -0.15 -6.54 16 25 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 26 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 27 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 28 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 31 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 32 C 0.07 1.22 6.04 -3.06 -0.02 1.21 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.56 7.17 -51.93 -0.37 0.19 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.08 0.90 6.94 -51.93 -0.36 0.54 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 1.22 6.02 -52.49 -0.32 0.90 16 42 H 0.11 1.09 6.18 -51.93 -0.32 0.77 16 43 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 45 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 46 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.39 9.59 7.76 -40.82 -0.32 9.27 16 50 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 51 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 52 H 0.07 1.36 8.03 -51.93 -0.42 0.95 16 LS Contribution 417.00 15.07 6.28 6.28 Total: -1.00 -29.79 417.00 -11.52 -41.31 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -8.64 Total: 11.49 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -4.13 Total: -12.43 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.11 Total: -52.86 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.79 -11.52 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082709801.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.453 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds