Wall clock time and date at job start Wed Apr 1 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46818 * 2 1 4 4 C 1.38261 * 120.00089 * 264.97527 * 3 2 1 5 5 C 1.38211 * 120.00022 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00113 * 359.78451 * 5 4 3 7 7 C 1.38211 * 119.99784 * 0.49766 * 6 5 4 8 8 C 1.38214 * 120.00249 * 84.99795 * 3 2 1 9 9 C 1.50703 * 119.99514 * 359.97438 * 8 3 2 10 10 H 1.08999 * 115.55305 * 334.29614 * 9 8 3 11 11 C 1.53006 * 117.49226 * 188.63106 * 9 8 3 12 12 C 1.53000 * 117.49905 * 120.00971 * 9 8 3 13 13 H 1.08998 * 117.49698 * 359.97438 * 12 9 8 14 14 C 1.50695 * 117.49802 * 214.97142 * 12 9 8 15 15 O 1.21285 * 120.00019 * 0.02562 * 14 12 9 16 16 N 1.34778 * 119.99969 * 179.97438 * 14 12 9 17 17 C 1.47431 * 125.64599 * 180.02562 * 16 14 12 18 18 C 1.54911 * 104.82733 * 204.09026 * 17 16 14 19 19 H 1.09006 * 111.00530 * 81.06467 * 18 17 16 20 20 C 1.52995 * 111.00300 * 204.87260 * 18 17 16 21 21 C 1.55154 * 101.58419 * 322.99085 * 18 17 16 22 22 H 1.09000 * 110.72026 * 276.95881 * 21 18 17 23 23 N 1.46498 * 110.72097 * 153.86478 * 21 18 17 24 24 C 1.36942 * 119.99914 * 154.99811 * 23 21 18 25 25 H 1.07996 * 120.00218 * 0.02562 * 24 23 21 26 26 C 1.38809 * 119.99909 * 179.97438 * 24 23 21 27 27 N 1.31625 * 120.00238 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 119.99945 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47078 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.47299 * 120.00078 * 28 26 24 31 31 H 1.48507 * 109.47262 * 240.00353 * 28 26 24 32 32 C 1.47023 * 125.64764 * 359.69558 * 16 14 12 33 33 H 1.08996 * 109.46648 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47176 * 300.00267 * 1 2 3 35 35 H 1.08999 * 109.47027 * 60.00334 * 1 2 3 36 36 H 1.09000 * 109.47327 * 240.00261 * 2 1 3 37 37 H 1.08999 * 109.47027 * 119.99666 * 2 1 3 38 38 H 1.08001 * 119.99615 * 359.97438 * 4 3 2 39 39 H 1.08004 * 119.99459 * 180.02562 * 5 4 3 40 40 H 1.07998 * 119.99823 * 180.25416 * 6 5 4 41 41 H 1.08002 * 120.00200 * 179.76459 * 7 6 5 42 42 H 1.08992 * 117.50347 * 359.97438 * 11 9 8 43 43 H 1.09001 * 117.49511 * 145.02318 * 11 9 8 44 44 H 1.08997 * 110.36251 * 322.92543 * 17 16 14 45 45 H 1.08999 * 110.36763 * 85.25571 * 17 16 14 46 46 H 1.09001 * 109.47286 * 58.55348 * 20 18 17 47 47 H 1.09004 * 109.47458 * 178.54603 * 20 18 17 48 48 H 1.09002 * 109.47589 * 298.55037 * 20 18 17 49 49 H 0.97006 * 120.00251 * 335.00193 * 23 21 18 50 50 H 0.96998 * 120.00248 * 179.97438 * 27 26 24 51 51 H 1.08999 * 109.88492 * 298.39154 * 32 16 14 52 52 H 1.09000 * 109.88114 * 59.56206 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0377 -1.1928 5 6 2.8217 3.3410 -1.1928 6 6 2.9485 4.0294 -0.0005 7 6 2.6249 3.4108 1.1923 8 6 2.1642 2.1072 1.1924 9 6 1.8052 1.4349 2.4925 10 1 1.0732 0.6306 2.4194 11 6 1.7781 2.3025 3.7524 12 6 2.9087 1.2931 3.5427 13 1 3.8944 1.6858 3.2932 14 6 2.9007 0.0519 4.3973 15 8 2.0407 -0.7884 4.2380 16 7 3.8497 -0.1249 5.3378 17 6 3.9605 -1.2866 6.2388 18 6 4.7478 -0.7629 7.4658 19 1 4.0915 -0.2268 8.1514 20 6 5.4692 -1.9058 8.1830 21 6 5.7613 0.2027 6.7968 22 1 6.6255 -0.3450 6.4210 23 7 6.1798 1.2467 7.7355 24 6 7.3883 1.8698 7.5723 25 1 8.0327 1.5918 6.7514 26 6 7.7846 2.8593 8.4614 27 7 6.9991 3.1984 9.4616 28 14 9.4334 3.7087 8.2392 29 1 10.1219 3.1493 7.0483 30 1 9.2179 5.1654 8.0470 31 1 10.2710 3.4871 9.4453 32 6 4.9497 0.8055 5.6306 33 1 -0.3632 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 2.2592 1.5011 -2.1244 39 1 3.0785 3.8229 -2.1246 40 1 3.3041 5.0491 -0.0010 41 1 2.7275 3.9472 2.1241 42 1 2.0203 3.3593 3.6411 43 1 1.0286 2.0686 4.5085 44 1 2.9705 -1.6281 6.5409 45 1 4.5090 -2.0931 5.7522 46 1 6.1502 -2.3981 7.4887 47 1 6.0348 -1.5068 9.0251 48 1 4.7367 -2.6267 8.5462 49 1 5.6009 1.4966 8.4726 50 1 7.2762 3.8897 10.0831 51 1 5.5854 0.9162 4.7521 52 1 4.5470 1.7750 5.9240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082709801.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:02 Heat of formation + Delta-G solvation = 1.528641 kcal Electronic energy + Delta-G solvation = -29759.277070 eV Core-core repulsion = 25916.378539 eV Total energy + Delta-G solvation = -3842.898531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.57507 -40.59707 -39.15248 -37.24387 -35.85062 -35.09715 -33.92334 -32.50684 -31.50391 -30.23164 -29.14984 -28.02039 -25.93091 -25.19671 -24.76250 -24.45120 -22.80497 -21.98240 -21.41092 -21.08099 -20.00249 -19.10037 -18.51011 -17.54757 -17.22828 -17.02800 -16.39012 -16.27917 -15.92618 -15.58191 -15.36126 -15.12964 -14.81970 -14.70901 -14.48872 -14.39710 -14.19303 -14.08837 -13.82684 -13.68337 -13.31849 -13.14229 -13.01028 -12.87617 -12.86533 -12.74920 -12.68444 -12.32062 -12.22916 -12.11662 -12.02953 -11.85290 -11.79243 -11.68543 -11.50299 -11.45142 -11.39186 -11.03953 -10.88657 -9.69607 -9.67211 -9.40914 -9.05351 -7.93575 -5.23302 0.35702 0.48835 1.40683 1.49999 1.51357 1.60240 1.90977 2.56996 2.64246 3.05366 3.28927 3.38399 3.60464 3.69668 3.78925 3.80729 3.88618 3.89962 3.91649 4.06678 4.11710 4.22276 4.23239 4.32645 4.35144 4.45665 4.48812 4.60795 4.61850 4.63554 4.64893 4.68879 4.71247 4.84647 4.88881 4.90074 4.95286 5.08169 5.10217 5.11061 5.12856 5.15112 5.23539 5.26624 5.32234 5.37310 5.48036 5.56267 5.61773 5.63686 5.77083 6.12368 6.26970 6.46614 7.05936 7.34955 8.05946 8.30254 9.29411 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010889 B = 0.002802 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.811143 B = 9991.452979 C =11907.177741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.083 4.083 4 C -0.124 4.124 5 C -0.123 4.123 6 C -0.130 4.130 7 C -0.126 4.126 8 C -0.067 4.067 9 C -0.075 4.075 10 H 0.117 0.883 11 C -0.134 4.134 12 C -0.181 4.181 13 H 0.127 0.873 14 C 0.554 3.446 15 O -0.580 6.580 16 N -0.609 5.609 17 C 0.116 3.884 18 C -0.104 4.104 19 H 0.070 0.930 20 C -0.127 4.127 21 C 0.172 3.828 22 H 0.071 0.929 23 N -0.720 5.720 24 C -0.238 4.238 25 H 0.080 0.920 26 C -0.069 4.069 27 N -0.967 5.967 28 Si 0.967 3.033 29 H -0.265 1.265 30 H -0.296 1.296 31 H -0.297 1.297 32 C 0.087 3.913 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.047 0.953 48 H 0.072 0.928 49 H 0.375 0.625 50 H 0.250 0.750 51 H 0.067 0.933 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.710 -4.252 -19.614 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.083 4.083 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.148 4.148 7 C -0.144 4.144 8 C -0.067 4.067 9 C -0.094 4.094 10 H 0.135 0.865 11 C -0.172 4.172 12 C -0.202 4.202 13 H 0.145 0.855 14 C 0.344 3.656 15 O -0.461 6.461 16 N -0.341 5.341 17 C -0.006 4.006 18 C -0.124 4.124 19 H 0.089 0.911 20 C -0.184 4.184 21 C 0.061 3.939 22 H 0.089 0.911 23 N -0.359 5.359 24 C -0.370 4.370 25 H 0.098 0.902 26 C -0.262 4.262 27 N -0.617 5.617 28 Si 0.797 3.203 29 H -0.189 1.189 30 H -0.223 1.223 31 H -0.224 1.224 32 C -0.038 4.038 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.119 0.881 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.208 0.792 50 H 0.059 0.941 51 H 0.085 0.915 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.008 -4.645 -19.805 23.130 hybrid contribution 0.787 0.855 0.737 1.376 sum -10.220 -3.790 -19.068 21.964 Atomic orbital electron populations 1.21710 0.94038 1.02224 1.01962 1.20566 0.96845 0.92251 1.02815 1.19907 0.99055 0.96582 0.92721 1.21283 0.99624 0.95627 0.97633 1.21466 0.99004 0.94691 0.98931 1.21398 1.00160 1.00908 0.92309 1.21262 0.99395 0.94380 0.99351 1.19033 1.00742 0.94332 0.92576 1.21027 0.99266 1.01419 0.87662 0.86549 1.23215 0.97870 0.97199 0.98869 1.22257 0.97809 0.97423 1.02704 0.85545 1.19642 0.79586 0.87063 0.79297 1.90633 1.38618 1.46392 1.70503 1.48464 1.27819 1.22817 1.34998 1.22314 1.00676 0.88349 0.89294 1.22550 0.96796 0.97292 0.95786 0.91113 1.21555 1.00160 0.96571 1.00163 1.21422 0.94665 0.88830 0.88955 0.91074 1.42468 1.19758 1.42561 1.31096 1.19647 0.95208 1.13284 1.08863 0.90210 1.25483 1.01732 1.01021 0.97951 1.69813 1.38793 1.34883 1.18196 0.85170 0.79977 0.77857 0.77328 1.18889 1.22346 1.22423 1.22994 0.87860 0.93078 0.99914 0.91665 0.93451 0.91803 0.89858 0.92308 0.84223 0.83835 0.84285 0.85188 0.85623 0.88118 0.90782 0.90147 0.91638 0.93363 0.90884 0.79232 0.94079 0.91453 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.74 71.98 0.70 -1.71 16 2 C -0.09 -1.66 5.38 29.85 0.16 -1.50 16 3 C -0.08 -1.70 5.13 -19.86 -0.10 -1.80 16 4 C -0.12 -2.14 9.68 22.27 0.22 -1.92 16 5 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 6 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 7 C -0.13 -2.56 9.30 22.27 0.21 -2.35 16 8 C -0.07 -1.49 5.61 -19.86 -0.11 -1.60 16 9 C -0.08 -1.82 4.66 -11.54 -0.05 -1.87 16 10 H 0.12 3.09 5.47 -2.39 -0.01 3.07 16 11 C -0.13 -3.09 9.56 30.60 0.29 -2.80 16 12 C -0.18 -4.85 5.17 -11.54 -0.06 -4.91 16 13 H 0.13 3.30 7.74 -2.39 -0.02 3.28 16 14 C 0.55 17.85 7.63 87.66 0.67 18.52 16 15 O -0.58 -21.46 16.51 -3.05 -0.05 -21.51 16 16 N -0.61 -19.14 3.33 -811.76 -2.70 -21.84 16 17 C 0.12 3.32 6.37 86.85 0.55 3.88 16 18 C -0.10 -3.17 3.27 -9.40 -0.03 -3.20 16 19 H 0.07 2.35 8.01 -2.38 -0.02 2.33 16 20 C -0.13 -3.36 9.30 71.98 0.67 -2.69 16 21 C 0.17 6.16 3.08 46.18 0.14 6.30 16 22 H 0.07 2.53 7.96 -2.39 -0.02 2.51 16 23 N -0.72 -33.27 5.15 -317.32 -1.64 -34.90 16 24 C -0.24 -12.23 9.96 84.03 0.84 -11.39 16 25 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 26 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 27 N -0.97 -56.57 13.06 21.65 0.28 -56.28 16 28 Si 0.97 44.05 29.55 68.60 2.03 46.07 16 29 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 30 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 31 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 32 C 0.09 2.90 6.04 86.73 0.52 3.43 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.90 7.17 -2.39 -0.02 0.88 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 37 H 0.06 1.35 6.94 -2.39 -0.02 1.33 16 38 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.13 2.38 6.02 -2.91 -0.02 2.37 16 42 H 0.13 2.41 6.18 -2.39 -0.01 2.40 16 43 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.07 2.12 8.04 -2.39 -0.02 2.11 16 45 H 0.08 2.09 8.04 -2.39 -0.02 2.07 16 46 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.38 19.00 7.76 -92.70 -0.72 18.28 16 50 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 51 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 52 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 Total: -1.00 -63.73 417.00 3.64 -60.08 By element: Atomic # 1 Polarization: 40.93 SS G_CDS: 0.19 Total: 41.12 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 5.53 Total: -12.74 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -4.05 Total: -113.03 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -63.73 3.64 -60.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082709801.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.612 kcal (2) G-P(sol) polarization free energy of solvation -63.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds