Wall clock time and date at job start Wed Apr 1 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47036 * 2 1 4 4 C 1.50696 * 109.47210 * 119.99811 * 2 1 3 5 5 C 1.38255 * 120.00270 * 300.00501 * 4 2 1 6 6 C 1.38213 * 119.99772 * 179.97438 * 5 4 2 7 7 C 1.38255 * 120.00425 * 0.27156 * 6 5 4 8 8 C 1.38213 * 119.99947 * 359.53991 * 7 6 5 9 9 C 1.50694 * 120.00451 * 180.20569 * 8 7 6 10 10 C 1.50699 * 109.47427 * 270.21329 * 9 8 7 11 11 O 1.21279 * 119.99598 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00092 * 179.97438 * 10 9 8 13 13 C 1.47291 * 136.54549 * 359.62677 * 12 10 9 14 14 C 1.54355 * 87.50483 * 151.47094 * 13 12 10 15 15 H 1.09001 * 115.78759 * 141.80559 * 14 13 12 16 16 C 1.53061 * 111.57828 * 274.16617 * 14 13 12 17 17 C 1.53149 * 109.21044 * 142.37470 * 16 14 13 18 18 N 1.46530 * 108.25581 * 301.59607 * 17 16 14 19 19 C 1.36944 * 119.73897 * 236.39501 * 18 17 16 20 20 H 1.07996 * 119.99937 * 152.11537 * 19 18 17 21 21 C 1.38814 * 119.99868 * 332.11797 * 19 18 17 22 22 N 1.31615 * 119.99836 * 160.47105 * 21 19 18 23 23 Si 1.86797 * 120.00028 * 340.46622 * 21 19 18 24 24 H 1.48505 * 109.47016 * 95.14890 * 23 21 19 25 25 H 1.48499 * 109.47317 * 215.14560 * 23 21 19 26 26 H 1.48502 * 109.47244 * 335.15038 * 23 21 19 27 27 C 1.45699 * 120.52401 * 56.42504 * 18 17 16 28 28 C 1.46468 * 136.54611 * 179.97438 * 12 10 9 29 29 H 1.09003 * 111.44105 * 97.06230 * 28 12 10 30 30 C 1.38221 * 119.99636 * 120.02145 * 4 2 1 31 31 H 1.08995 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47162 * 299.99924 * 1 2 3 33 33 H 1.09003 * 109.46716 * 59.99993 * 1 2 3 34 34 H 1.08995 * 109.47162 * 240.00626 * 2 1 3 35 35 H 1.09006 * 109.47170 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47551 * 300.00066 * 3 2 1 37 37 H 1.08997 * 109.47083 * 60.00028 * 3 2 1 38 38 H 1.08000 * 119.99873 * 359.97438 * 5 4 2 39 39 H 1.08002 * 119.99579 * 180.02562 * 6 5 4 40 40 H 1.07994 * 120.00380 * 179.72199 * 7 6 5 41 41 H 1.09000 * 109.46693 * 30.21393 * 9 8 7 42 42 H 1.09003 * 109.47430 * 150.20611 * 9 8 7 43 43 H 1.08999 * 113.52532 * 266.10138 * 13 12 10 44 44 H 1.08998 * 113.53154 * 36.73369 * 13 12 10 45 45 H 1.09008 * 109.50948 * 22.46169 * 16 14 13 46 46 H 1.08990 * 109.51521 * 262.30132 * 16 14 13 47 47 H 1.09003 * 109.70254 * 181.90320 * 17 16 14 48 48 H 1.09002 * 109.73753 * 61.31244 * 17 16 14 49 49 H 0.96998 * 120.00124 * 179.97438 * 22 21 19 50 50 H 1.09006 * 108.79035 * 199.10800 * 27 18 17 51 51 H 1.08998 * 108.70131 * 80.82957 * 27 18 17 52 52 H 1.07998 * 120.00146 * 0.02562 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.6983 -0.2381 2.4862 6 6 2.1587 -0.8900 3.6146 7 6 2.9578 -2.0110 3.4878 8 6 3.2885 -2.4855 2.2325 9 6 4.1557 -3.7101 2.0941 10 6 5.6044 -3.2973 2.0482 11 8 5.9031 -2.1241 2.1203 12 7 6.5679 -4.2318 1.9271 13 6 6.6263 -5.6997 1.8207 14 6 7.9329 -5.5221 1.0184 15 1 8.7132 -6.2578 1.2139 16 6 7.6537 -5.2971 -0.4696 17 6 8.6534 -4.2765 -1.0213 18 7 8.5130 -3.0357 -0.2545 19 6 8.2394 -1.8623 -0.9052 20 1 7.7061 -1.0737 -0.3953 21 6 8.6475 -1.6864 -2.2203 22 7 8.0801 -0.7635 -2.9676 23 14 10.0020 -2.7596 -2.9293 24 1 9.3972 -3.9105 -3.6470 25 1 10.8216 -1.9614 -3.8760 26 1 10.8641 -3.2604 -1.8287 27 6 8.6630 -3.0405 1.1948 28 6 8.0303 -4.2471 1.8480 29 1 8.4799 -4.4505 2.8199 30 6 2.8274 -1.8339 1.1036 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.0777 0.6402 2.5853 39 1 1.8973 -0.5212 4.5955 40 1 3.3212 -2.5177 4.3695 41 1 3.9925 -4.3690 2.9469 42 1 3.8983 -4.2356 1.1745 43 1 6.7685 -6.2001 2.7786 44 1 5.8103 -6.1266 1.2376 45 1 6.6394 -4.9184 -0.5964 46 1 7.7612 -6.2393 -1.0068 47 1 8.4404 -4.0848 -2.0729 48 1 9.6679 -4.6610 -0.9160 49 1 8.3655 -0.6403 -3.8864 50 1 8.2005 -2.1397 1.5986 51 1 9.7258 -3.0273 1.4362 52 1 3.0889 -2.2024 0.1227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084485529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:38 Heat of formation + Delta-G solvation = 50.121730 kcal Electronic energy + Delta-G solvation = -30983.919231 eV Core-core repulsion = 27143.127854 eV Total energy + Delta-G solvation = -3840.791376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.76251 -39.60213 -37.78214 -35.57311 -35.38564 -32.40043 -31.85068 -31.08238 -30.02608 -29.41015 -27.37929 -27.08348 -26.78149 -23.60341 -23.55625 -22.98619 -22.05854 -21.22877 -20.33440 -19.15923 -17.74522 -17.01029 -16.57327 -16.27470 -15.86321 -15.51843 -15.41624 -15.16567 -14.75760 -14.10015 -13.80014 -13.64326 -13.61459 -13.53367 -13.48177 -13.25394 -12.95897 -12.70974 -12.50363 -12.30549 -12.21106 -11.97712 -11.88909 -11.85087 -11.76389 -11.37721 -11.17482 -11.06546 -11.04585 -10.87764 -10.71251 -10.55217 -10.52317 -10.18883 -9.89909 -9.63161 -9.36630 -9.17559 -8.61967 -8.58776 -8.42739 -8.25506 -6.86580 -5.83268 -3.19584 1.48679 1.59059 3.09827 3.13664 3.34669 3.52322 3.54853 3.92649 4.48640 4.59857 4.67869 4.75958 4.80035 4.91528 4.99519 5.05584 5.12899 5.23312 5.25902 5.27276 5.32158 5.42918 5.46658 5.47376 5.53509 5.57175 5.64720 5.66395 5.69826 5.70628 5.84083 5.84916 5.89743 5.94640 6.00030 6.04671 6.13941 6.21181 6.24587 6.29188 6.31000 6.37709 6.38199 6.60491 6.62165 6.66502 6.73133 6.82390 6.84449 6.96455 7.17864 8.11089 8.16840 8.48133 8.64121 9.09373 9.84069 10.16593 11.32946 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.003877 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.435188 B = 7221.015086 C = 9068.470837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.072 4.072 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.112 4.112 8 C -0.059 4.059 9 C -0.094 4.094 10 C 0.545 3.455 11 O -0.514 6.514 12 N -0.636 5.636 13 C 0.097 3.903 14 C -0.113 4.113 15 H 0.094 0.906 16 C -0.115 4.115 17 C 0.127 3.873 18 N -0.596 5.596 19 C -0.249 4.249 20 H 0.086 0.914 21 C 0.020 3.980 22 N -0.911 5.911 23 Si 0.883 3.117 24 H -0.291 1.291 25 H -0.305 1.305 26 H -0.270 1.270 27 C 0.145 3.855 28 C 0.126 3.874 29 H 0.077 0.923 30 C -0.095 4.095 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.027 0.973 49 H 0.260 0.740 50 H 0.078 0.922 51 H 0.023 0.977 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.390 -9.090 11.613 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.072 4.072 5 C -0.135 4.135 6 C -0.139 4.139 7 C -0.130 4.130 8 C -0.059 4.059 9 C -0.134 4.134 10 C 0.334 3.666 11 O -0.388 6.388 12 N -0.373 5.373 13 C -0.026 4.026 14 C -0.132 4.132 15 H 0.112 0.888 16 C -0.155 4.155 17 C 0.001 3.999 18 N -0.319 5.319 19 C -0.378 4.378 20 H 0.103 0.897 21 C -0.178 4.178 22 N -0.555 5.555 23 Si 0.714 3.286 24 H -0.220 1.220 25 H -0.234 1.234 26 H -0.195 1.195 27 C 0.019 3.981 28 C 0.022 3.978 29 H 0.095 0.905 30 C -0.113 4.113 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.045 0.955 49 H 0.070 0.930 50 H 0.096 0.904 51 H 0.040 0.960 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.422 -8.136 11.546 18.810 hybrid contribution 0.856 -0.700 -0.418 1.183 sum -11.566 -8.836 11.127 18.322 Atomic orbital electron populations 1.21843 0.94631 1.01700 1.01650 1.20135 0.95505 0.96402 0.95670 1.21849 1.02124 0.94768 1.01417 1.19786 0.97490 0.95268 0.94651 1.20886 1.00839 0.99780 0.92034 1.20986 0.98627 0.96001 0.98248 1.20868 0.98573 0.97130 0.96415 1.19229 0.96939 0.96273 0.93503 1.20582 0.91478 0.96910 1.04406 1.19811 0.85731 0.84726 0.76307 1.90761 1.82741 1.16897 1.48404 1.49447 1.07385 1.06994 1.73512 1.23330 0.98225 0.81853 0.99227 1.22837 0.96933 0.97252 0.96225 0.88784 1.21835 1.01773 0.99254 0.92623 1.21228 0.95446 0.86814 0.96395 1.43781 1.83240 1.04081 1.00815 1.18995 1.29742 0.93200 0.95831 0.89678 1.25258 0.98913 0.97023 0.96622 1.69840 1.42145 1.35945 1.07552 0.86952 0.84155 0.79098 0.78378 1.21956 1.23391 1.19502 1.20266 0.96618 0.96333 0.84914 1.22306 0.80842 0.96871 0.97826 0.90474 1.20942 0.96904 0.95264 0.98224 0.92732 0.92678 0.92494 0.90239 0.91878 0.92463 0.92791 0.86510 0.86442 0.86700 0.88759 0.88450 0.90294 0.90714 0.91476 0.92310 0.90866 0.95507 0.92996 0.90357 0.95972 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.01 37.16 0.33 -1.09 16 2 C -0.06 -0.74 3.09 -91.77 -0.28 -1.03 16 3 C -0.14 -1.83 9.01 37.16 0.33 -1.49 16 4 C -0.07 -1.02 4.78 -104.62 -0.50 -1.52 16 5 C -0.12 -1.52 8.71 -39.58 -0.34 -1.87 16 6 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 7 C -0.11 -1.53 9.70 -39.58 -0.38 -1.91 16 8 C -0.06 -0.88 4.37 -104.62 -0.46 -1.34 16 9 C -0.09 -1.28 5.68 -29.04 -0.17 -1.44 16 10 C 0.55 9.75 8.01 -10.99 -0.09 9.67 16 11 O -0.51 -11.74 15.28 5.56 0.08 -11.65 16 12 N -0.64 -10.13 3.33 -187.56 -0.62 -10.75 16 13 C 0.10 1.10 7.79 -11.40 -0.09 1.02 16 14 C -0.11 -1.55 4.57 -90.18 -0.41 -1.96 16 15 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 16 C -0.12 -1.94 5.71 -26.62 -0.15 -2.09 16 17 C 0.13 2.75 4.13 -3.95 -0.02 2.73 16 18 N -0.60 -14.67 2.79 -174.90 -0.49 -15.16 16 19 C -0.25 -7.35 9.97 -15.06 -0.15 -7.50 16 20 H 0.09 2.83 8.00 -52.49 -0.42 2.41 16 21 C 0.02 0.59 5.23 -17.43 -0.09 0.50 16 22 N -0.91 -28.96 13.97 55.49 0.78 -28.18 16 23 Si 0.88 22.81 24.33 -169.99 -4.14 18.68 16 24 H -0.29 -7.21 6.70 56.52 0.38 -6.83 16 25 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 26 H -0.27 -6.78 6.45 56.52 0.36 -6.41 16 27 C 0.15 3.10 6.15 -5.43 -0.03 3.06 16 28 C 0.13 2.05 4.02 -77.71 -0.31 1.74 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 C -0.10 -1.49 9.33 -39.58 -0.37 -1.86 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.06 7.88 -51.93 -0.41 0.65 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.61 7.39 -51.93 -0.38 0.23 16 38 H 0.12 1.27 7.10 -52.49 -0.37 0.90 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 42 H 0.10 1.21 8.09 -51.93 -0.42 0.79 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 45 H 0.07 1.24 7.69 -51.92 -0.40 0.84 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.77 4.21 -51.93 -0.22 1.55 16 48 H 0.03 0.57 7.09 -51.93 -0.37 0.20 16 49 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 50 H 0.08 1.90 6.46 -51.93 -0.34 1.57 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.12 1.91 7.95 -52.49 -0.42 1.50 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -35.74 402.37 -10.71 -46.46 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.81 Total: 2.87 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.58 Total: -8.32 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.34 Total: -54.10 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.14 Total: 18.68 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.74 -10.71 -46.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084485529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.579 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds