Wall clock time and date at job start Wed Apr 1 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47086 * 2 1 4 4 C 1.38238 * 120.00026 * 89.99887 * 3 2 1 5 5 C 1.38231 * 119.99804 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00640 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00302 * 179.70268 * 6 5 4 8 8 H 1.08993 * 109.47174 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.46645 * 239.99610 * 7 6 5 10 10 C 1.50697 * 109.47312 * 119.99499 * 7 6 5 11 11 O 1.21281 * 120.00135 * 0.02562 * 10 7 6 12 12 N 1.34775 * 120.00158 * 179.97438 * 10 7 6 13 13 C 1.47287 * 136.54178 * 0.02562 * 12 10 7 14 14 C 1.54084 * 87.60670 * 151.35865 * 13 12 10 15 15 H 1.09001 * 115.04194 * 142.50179 * 14 13 12 16 16 C 1.53067 * 111.39303 * 273.96950 * 14 13 12 17 17 C 1.53143 * 109.21359 * 142.39625 * 16 14 13 18 18 N 1.46540 * 108.25536 * 301.59456 * 17 16 14 19 19 C 1.36932 * 119.73628 * 236.44712 * 18 17 16 20 20 H 1.07998 * 120.00629 * 25.16342 * 19 18 17 21 21 C 1.38813 * 119.99777 * 205.17247 * 19 18 17 22 22 N 1.31619 * 120.00076 * 14.41540 * 21 19 18 23 23 Si 1.86795 * 120.00242 * 194.41979 * 21 19 18 24 24 H 1.48498 * 109.47171 * 59.99708 * 23 21 19 25 25 H 1.48502 * 109.47383 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47133 * 299.99904 * 23 21 19 27 27 C 1.45697 * 120.52201 * 56.41756 * 18 17 16 28 28 C 1.46468 * 136.54410 * 179.62436 * 12 10 7 29 29 H 1.08995 * 111.43879 * 96.39147 * 28 12 10 30 30 C 1.38241 * 119.99641 * 359.97056 * 6 5 4 31 31 C 1.38234 * 120.00146 * 0.05328 * 30 6 5 32 32 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47098 * 299.99722 * 1 2 3 34 34 H 1.09003 * 109.47061 * 60.00003 * 1 2 3 35 35 H 1.08996 * 109.47098 * 240.00277 * 2 1 3 36 36 H 1.08995 * 109.47381 * 120.00001 * 2 1 3 37 37 H 1.07998 * 119.99822 * 359.97438 * 4 3 2 38 38 H 1.08002 * 119.99685 * 179.97438 * 5 4 3 39 39 H 1.08998 * 109.46678 * 180.02562 * 9 7 6 40 40 H 1.08999 * 109.47256 * 299.99346 * 9 7 6 41 41 H 1.08996 * 109.46961 * 60.00047 * 9 7 6 42 42 H 1.08997 * 113.52789 * 266.04363 * 13 12 10 43 43 H 1.09004 * 113.52966 * 36.60607 * 13 12 10 44 44 H 1.08999 * 109.51672 * 262.32607 * 16 14 13 45 45 H 1.09000 * 109.51015 * 22.42379 * 16 14 13 46 46 H 1.09002 * 109.70278 * 61.28403 * 17 16 14 47 47 H 1.08995 * 109.70679 * 181.85800 * 17 16 14 48 48 H 0.97003 * 120.00646 * 180.02562 * 22 21 19 49 49 H 1.09000 * 108.78768 * 80.90015 * 27 18 17 50 50 H 1.08997 * 108.78670 * 199.22902 * 27 18 17 51 51 H 1.07998 * 119.99792 * 179.97438 * 30 6 5 52 52 H 1.08000 * 120.00081 * 179.97438 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7230 3.3759 1.1971 6 6 2.9524 4.0280 0.0001 7 6 3.4478 5.4512 0.0001 8 1 3.5649 5.7951 1.0277 9 6 2.4369 6.3430 -0.7237 10 6 4.7763 5.5207 -0.7078 11 8 5.2720 4.5138 -1.1675 12 7 5.4133 6.7021 -0.8309 13 6 5.1640 8.0978 -0.4321 14 6 6.6922 8.2867 -0.3754 15 1 7.0505 9.2557 -0.7228 16 6 7.2561 7.8701 0.9853 17 6 8.6095 7.1832 0.7810 18 7 8.4093 6.0257 -0.0950 19 6 8.7879 4.7798 0.3286 20 1 8.8431 4.5621 1.3850 21 6 9.1009 3.7965 -0.5999 22 7 9.3118 4.1221 -1.8576 23 14 9.2227 2.0111 -0.0644 24 1 7.9198 1.5727 0.4970 25 1 9.5663 1.1653 -1.2357 26 1 10.2785 1.8758 0.9712 27 6 7.8100 6.1899 -1.4128 28 6 6.6696 7.1768 -1.4156 29 1 6.5171 7.5729 -2.4195 30 6 2.7221 3.3763 -1.1971 31 6 2.2614 2.0730 -1.1972 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 2.0823 1.5635 2.1325 38 1 2.9026 3.8852 2.1325 39 1 2.7954 7.3723 -0.7241 40 1 2.3195 5.9992 -1.7514 41 1 1.4760 6.2927 -0.2116 42 1 4.6806 8.6921 -1.2074 43 1 4.6763 8.1927 0.5381 44 1 7.3864 8.7529 1.6112 45 1 6.5657 7.1793 1.4694 46 1 9.3084 7.8791 0.3167 47 1 9.0033 6.8537 1.7424 48 1 9.5302 3.4350 -2.5065 49 1 8.5767 6.5347 -2.1067 50 1 7.4389 5.2231 -1.7527 51 1 2.9010 3.8858 -2.1324 52 1 2.0811 1.5640 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084723931.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:29 Heat of formation + Delta-G solvation = 47.099969 kcal Electronic energy + Delta-G solvation = -31402.379864 eV Core-core repulsion = 27561.457455 eV Total energy + Delta-G solvation = -3840.922410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.63804 -39.51485 -37.63303 -35.16855 -34.84970 -32.66961 -32.01813 -30.73551 -30.08577 -29.13050 -28.11833 -26.89498 -24.81631 -23.79799 -23.36272 -22.58705 -22.30891 -21.01300 -20.54943 -19.42052 -17.69935 -16.82633 -16.33329 -15.97438 -15.65050 -15.41190 -15.26209 -14.70733 -14.22168 -13.97305 -13.76855 -13.66999 -13.55269 -13.40591 -13.21847 -13.14916 -12.96826 -12.73863 -12.50289 -12.39814 -12.08382 -11.96856 -11.75939 -11.53882 -11.43659 -11.36814 -11.11289 -11.02273 -10.69194 -10.65950 -10.58935 -10.54427 -10.43472 -10.15663 -9.82327 -9.72601 -9.48285 -8.87019 -8.63594 -8.33324 -8.21750 -8.02814 -6.54012 -5.60280 -3.01935 1.50685 1.65284 3.29483 3.35445 3.51023 3.57106 3.62330 3.97666 4.64944 4.67306 4.72313 4.75104 4.84360 4.90922 5.11086 5.15433 5.23778 5.24541 5.32480 5.37013 5.47293 5.49675 5.52858 5.58766 5.61174 5.62776 5.66281 5.71048 5.76837 5.79924 5.82171 5.92600 5.94885 6.05236 6.07134 6.16727 6.18509 6.26104 6.28615 6.37747 6.42447 6.57121 6.61033 6.64311 6.78012 6.81995 6.84239 7.03230 7.21083 7.55213 7.82589 7.99520 8.42706 8.63041 8.87668 9.41308 10.05728 10.52811 11.47848 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.004357 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.500718 B = 6424.960606 C = 8363.982518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.122 4.122 5 C -0.108 4.108 6 C -0.064 4.064 7 C -0.065 4.065 8 H 0.096 0.904 9 C -0.137 4.137 10 C 0.543 3.457 11 O -0.505 6.505 12 N -0.632 5.632 13 C 0.095 3.905 14 C -0.114 4.114 15 H 0.090 0.910 16 C -0.115 4.115 17 C 0.148 3.852 18 N -0.584 5.584 19 C -0.253 4.253 20 H 0.060 0.940 21 C 0.014 3.986 22 N -0.904 5.904 23 Si 0.899 3.101 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.167 3.833 28 C 0.120 3.880 29 H 0.069 0.931 30 C -0.078 4.078 31 C -0.120 4.120 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.019 0.981 47 H 0.054 0.946 48 H 0.252 0.748 49 H 0.028 0.972 50 H 0.104 0.896 51 H 0.117 0.883 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 5.079 3.558 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.140 4.140 5 C -0.126 4.126 6 C -0.064 4.064 7 C -0.087 4.087 8 H 0.114 0.886 9 C -0.194 4.194 10 C 0.331 3.669 11 O -0.378 6.378 12 N -0.369 5.369 13 C -0.028 4.028 14 C -0.133 4.133 15 H 0.108 0.892 16 C -0.154 4.154 17 C 0.022 3.978 18 N -0.307 5.307 19 C -0.382 4.382 20 H 0.078 0.922 21 C -0.185 4.185 22 N -0.549 5.549 23 Si 0.729 3.271 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.041 3.959 28 C 0.016 3.984 29 H 0.086 0.914 30 C -0.097 4.097 31 C -0.138 4.138 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.046 0.954 50 H 0.122 0.878 51 H 0.135 0.865 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.623 4.157 3.161 18.380 hybrid contribution 0.074 -0.824 0.188 0.849 sum -17.549 3.332 3.350 18.174 Atomic orbital electron populations 1.21736 0.94965 1.01367 1.02082 1.20522 0.95893 0.93020 1.02767 1.19817 0.99617 0.95915 0.93297 1.20869 1.01042 0.94752 0.97298 1.20943 0.99538 0.94937 0.97170 1.19290 0.99080 0.94500 0.93556 1.20207 0.93455 0.93789 1.01233 0.88606 1.21773 0.98145 0.98864 1.00657 1.19690 0.85133 0.81624 0.80436 1.90811 1.66141 1.33062 1.47781 1.49406 1.23075 1.05542 1.58833 1.23304 0.97464 0.82504 0.99567 1.22697 0.94294 0.98417 0.97875 0.89154 1.21838 1.00403 0.99302 0.93894 1.20712 0.92513 0.89783 0.94832 1.43441 1.69222 1.02748 1.15241 1.19026 1.39992 0.87629 0.91575 0.92175 1.24874 0.99245 0.98408 0.95935 1.69992 1.51013 1.31820 1.02040 0.86419 0.77787 0.85614 0.77234 1.20993 1.21725 1.21226 1.20164 0.89877 0.98782 0.87121 1.22461 0.86599 0.93957 0.95360 0.91353 1.20855 0.96657 0.94588 0.97552 1.20929 1.00681 0.94849 0.97326 0.92661 0.92663 0.92638 0.91157 0.91202 0.86452 0.86362 0.91818 0.92119 0.91729 0.90664 0.91228 0.92779 0.92193 0.96357 0.92706 0.93839 0.95426 0.87816 0.86459 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.90 37.16 0.37 -0.93 16 2 C -0.08 -0.92 6.06 -27.88 -0.17 -1.09 16 3 C -0.09 -1.19 5.13 -104.62 -0.54 -1.72 16 4 C -0.12 -1.68 9.70 -39.58 -0.38 -2.07 16 5 C -0.11 -1.59 9.67 -39.59 -0.38 -1.98 16 6 C -0.06 -1.02 4.39 -104.62 -0.46 -1.48 16 7 C -0.07 -0.98 2.80 -92.92 -0.26 -1.24 16 8 H 0.10 1.32 7.88 -51.93 -0.41 0.91 16 9 C -0.14 -1.56 8.89 37.16 0.33 -1.23 16 10 C 0.54 10.68 7.21 -10.99 -0.08 10.60 16 11 O -0.50 -12.65 14.37 5.56 0.08 -12.57 16 12 N -0.63 -11.26 3.29 -188.06 -0.62 -11.88 16 13 C 0.10 1.23 6.09 -11.54 -0.07 1.16 16 14 C -0.11 -1.71 4.57 -90.46 -0.41 -2.13 16 15 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 16 C -0.11 -1.91 5.69 -26.62 -0.15 -2.06 16 17 C 0.15 3.10 6.46 -3.95 -0.03 3.08 16 18 N -0.58 -15.14 3.03 -175.07 -0.53 -15.67 16 19 C -0.25 -7.38 9.53 -15.06 -0.14 -7.52 16 20 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 21 C 0.01 0.42 4.94 -17.43 -0.09 0.33 16 22 N -0.90 -27.94 10.94 55.49 0.61 -27.33 16 23 Si 0.90 24.03 29.58 -169.99 -5.03 19.00 16 24 H -0.28 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 C 0.17 4.19 4.59 -5.57 -0.03 4.17 16 28 C 0.12 2.30 3.98 -77.98 -0.31 1.99 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 C -0.08 -1.27 7.94 -39.58 -0.31 -1.58 16 31 C -0.12 -1.76 9.70 -39.58 -0.38 -2.15 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.52 7.95 -52.49 -0.42 1.10 16 39 H 0.06 0.65 6.40 -51.93 -0.33 0.31 16 40 H 0.06 0.72 7.38 -51.93 -0.38 0.34 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.09 7.68 -51.93 -0.40 0.69 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 48 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.03 0.75 8.00 -51.93 -0.42 0.34 16 50 H 0.10 3.08 4.95 -51.93 -0.26 2.82 16 51 H 0.12 1.90 7.52 -52.49 -0.39 1.50 16 52 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 405.15 15.07 6.11 6.11 Total: -1.00 -35.31 405.15 -11.75 -47.06 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.87 Total: 1.12 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.50 Total: -5.85 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.54 Total: -54.88 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.03 Total: 19.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.31 -11.75 -47.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084723931.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.162 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds