Wall clock time and date at job start Wed Apr 1 2020 03:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.46784 * 2 1 4 4 C 1.38236 * 120.00282 * 269.72626 * 3 2 1 5 5 C 1.38234 * 120.00143 * 179.76767 * 4 3 2 6 6 C 1.38238 * 119.99663 * 0.48643 * 5 4 3 7 7 C 1.50703 * 119.99835 * 179.77339 * 6 5 4 8 8 H 1.08997 * 109.47173 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.46833 * 300.01658 * 7 6 5 10 10 C 1.50696 * 109.47162 * 60.01811 * 7 6 5 11 11 O 1.21276 * 120.00221 * 0.02562 * 10 7 6 12 12 N 1.34784 * 119.99580 * 180.02562 * 10 7 6 13 13 C 1.47286 * 136.54249 * 359.97438 * 12 10 7 14 14 C 1.54084 * 87.60409 * 151.36886 * 13 12 10 15 15 H 1.08997 * 115.04393 * 142.50231 * 14 13 12 16 16 C 1.53068 * 111.39371 * 273.97476 * 14 13 12 17 17 C 1.53146 * 109.21593 * 142.39853 * 16 14 13 18 18 N 1.46538 * 108.24965 * 301.58670 * 17 16 14 19 19 C 1.36933 * 119.74057 * 236.44476 * 18 17 16 20 20 H 1.07994 * 120.00110 * 25.17407 * 19 18 17 21 21 C 1.38815 * 120.00148 * 205.17914 * 19 18 17 22 22 N 1.31614 * 120.00100 * 14.48127 * 21 19 18 23 23 Si 1.86797 * 119.99852 * 194.49289 * 21 19 18 24 24 H 1.48501 * 109.47486 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47420 * 119.99975 * 23 21 19 26 26 H 1.48503 * 109.46915 * 239.99259 * 23 21 19 27 27 C 1.45707 * 120.52059 * 56.42373 * 18 17 16 28 28 C 1.46463 * 136.53920 * 179.63203 * 12 10 7 29 29 H 1.08994 * 111.44602 * 96.38454 * 28 12 10 30 30 C 1.38241 * 120.00171 * 359.78657 * 6 5 4 31 31 C 1.38227 * 119.99660 * 359.96095 * 30 6 5 32 32 H 1.09007 * 109.46868 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47548 * 299.99621 * 1 2 3 34 34 H 1.09000 * 109.47690 * 60.00120 * 1 2 3 35 35 H 1.09000 * 109.47690 * 119.99880 * 2 1 3 36 36 H 1.09005 * 109.47300 * 240.00787 * 2 1 3 37 37 H 1.07999 * 119.99436 * 0.02562 * 4 3 2 38 38 H 1.07993 * 120.00181 * 180.25877 * 5 4 3 39 39 H 1.09001 * 109.46998 * 179.97438 * 9 7 6 40 40 H 1.09001 * 109.47205 * 300.00780 * 9 7 6 41 41 H 1.09003 * 109.46933 * 59.99994 * 9 7 6 42 42 H 1.08995 * 113.52827 * 266.05115 * 13 12 10 43 43 H 1.09001 * 113.52906 * 36.62140 * 13 12 10 44 44 H 1.08997 * 109.51420 * 262.32006 * 16 14 13 45 45 H 1.08997 * 109.51144 * 22.42163 * 16 14 13 46 46 H 1.08996 * 109.70749 * 61.27437 * 17 16 14 47 47 H 1.08997 * 109.70515 * 181.85628 * 17 16 14 48 48 H 0.97004 * 120.00015 * 179.97438 * 22 21 19 49 49 H 1.09002 * 108.78546 * 80.89647 * 27 18 17 50 50 H 1.08996 * 108.78810 * 199.10782 * 27 18 17 51 51 H 1.07995 * 119.99634 * 179.97438 * 30 6 5 52 52 H 1.08004 * 119.99795 * 179.97438 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2680 2.0707 -1.1971 5 6 2.7241 3.3756 -1.1971 6 6 2.9541 4.0274 0.0001 7 6 3.4562 5.4483 0.0002 8 1 3.5774 5.7908 1.0278 9 6 4.8040 5.5129 -0.7211 10 6 2.4635 6.3319 -0.7102 11 8 1.4479 5.8550 -1.1707 12 7 2.7042 7.6523 -0.8337 13 6 3.7700 8.5868 -0.4334 14 6 3.3903 9.4426 -1.6572 15 1 3.4419 10.5200 -1.5007 16 6 4.1139 8.9651 -2.9187 17 6 3.1682 9.0830 -4.1174 18 7 1.9767 8.2751 -3.8432 19 6 1.6085 7.2888 -4.7188 20 1 2.3491 6.8277 -5.3553 21 6 0.2832 6.8817 -4.7883 22 7 -0.6606 7.6162 -4.2387 23 14 -0.1606 5.2912 -5.6616 24 1 1.0730 4.6559 -6.1906 25 1 -0.8217 4.3685 -4.7041 26 1 -1.0864 5.5851 -6.7850 27 6 1.1811 8.5128 -2.6459 28 6 2.0270 8.8051 -1.4317 29 1 1.4464 9.3547 -0.6909 30 6 2.7237 3.3757 1.1973 31 6 2.2626 2.0726 1.1972 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.8933 -0.5137 -0.8901 37 1 2.0918 1.5602 -2.1324 38 1 2.9043 3.8847 -2.1323 39 1 5.1670 6.5407 -0.7215 40 1 5.5220 4.8736 -0.2073 41 1 4.6829 5.1703 -1.7488 42 1 3.5801 9.0812 0.5191 43 1 4.7703 8.1579 -0.4945 44 1 4.9957 9.5829 -3.0885 45 1 4.4164 7.9255 -2.7934 46 1 2.8813 10.1250 -4.2582 47 1 3.6646 8.7140 -5.0149 48 1 -1.5867 7.3319 -4.2876 49 1 0.5190 9.3596 -2.8268 50 1 0.5726 7.6304 -2.4479 51 1 2.9037 3.8848 2.1325 52 1 2.0830 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084723932.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:42 Heat of formation + Delta-G solvation = 48.830329 kcal Electronic energy + Delta-G solvation = -31640.639715 eV Core-core repulsion = 27799.792340 eV Total energy + Delta-G solvation = -3840.847376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.15 seconds Orbital eigenvalues (eV) -40.65849 -39.49599 -37.61862 -35.18039 -34.83122 -32.61842 -32.04642 -30.71279 -30.09926 -29.12732 -28.08503 -26.90934 -24.74450 -23.81499 -23.31520 -22.56999 -22.38136 -21.01113 -20.53232 -19.36685 -17.68741 -16.94174 -16.28859 -15.95784 -15.63185 -15.38049 -15.24315 -14.65021 -14.25919 -14.11691 -13.75133 -13.60432 -13.49763 -13.32370 -13.19620 -13.15538 -12.99869 -12.72052 -12.44558 -12.36435 -12.10152 -11.90500 -11.72011 -11.50231 -11.40669 -11.33308 -11.07795 -10.97829 -10.67508 -10.65335 -10.62693 -10.53198 -10.42216 -10.13807 -9.81113 -9.74295 -9.47269 -8.86910 -8.62893 -8.33390 -8.23673 -8.02762 -6.55615 -5.62349 -3.03937 1.50958 1.66685 3.29245 3.35020 3.48826 3.55519 3.58175 3.98489 4.62839 4.68853 4.71899 4.78913 4.86114 4.94948 5.14582 5.17424 5.22100 5.32285 5.35145 5.37779 5.42893 5.49437 5.54764 5.57973 5.62254 5.66385 5.70209 5.74702 5.79684 5.84882 5.90022 5.95688 6.00990 6.14077 6.16504 6.18854 6.23199 6.27319 6.31771 6.37626 6.43612 6.56581 6.61797 6.64156 6.81214 6.81404 6.87789 7.02577 7.23106 7.54259 7.81706 7.98313 8.42443 8.61141 8.87218 9.39272 10.03874 10.51237 11.45881 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009841 B = 0.004676 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.570312 B = 5987.065918 C = 7999.267807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.119 4.119 5 C -0.073 4.073 6 C -0.067 4.067 7 C -0.064 4.064 8 H 0.093 0.907 9 C -0.141 4.141 10 C 0.543 3.457 11 O -0.505 6.505 12 N -0.631 5.631 13 C 0.091 3.909 14 C -0.113 4.113 15 H 0.090 0.910 16 C -0.115 4.115 17 C 0.148 3.852 18 N -0.584 5.584 19 C -0.251 4.251 20 H 0.062 0.938 21 C 0.013 3.987 22 N -0.903 5.903 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.288 1.288 26 H -0.293 1.293 27 C 0.167 3.833 28 C 0.120 3.880 29 H 0.068 0.932 30 C -0.112 4.112 31 C -0.125 4.125 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.018 0.982 47 H 0.054 0.946 48 H 0.251 0.749 49 H 0.027 0.973 50 H 0.104 0.896 51 H 0.117 0.883 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 -5.101 12.699 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.137 4.137 5 C -0.091 4.091 6 C -0.067 4.067 7 C -0.085 4.085 8 H 0.111 0.889 9 C -0.198 4.198 10 C 0.331 3.669 11 O -0.378 6.378 12 N -0.368 5.368 13 C -0.033 4.033 14 C -0.132 4.132 15 H 0.108 0.892 16 C -0.155 4.155 17 C 0.022 3.978 18 N -0.307 5.307 19 C -0.380 4.380 20 H 0.079 0.921 21 C -0.186 4.186 22 N -0.548 5.548 23 Si 0.728 3.272 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.220 1.220 27 C 0.041 3.959 28 C 0.016 3.984 29 H 0.086 0.914 30 C -0.130 4.130 31 C -0.143 4.143 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.045 0.955 50 H 0.122 0.878 51 H 0.135 0.865 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.581 -5.666 12.464 17.304 hybrid contribution -0.386 -0.654 -0.185 0.782 sum 10.195 -6.321 12.279 17.166 Atomic orbital electron populations 1.21756 0.94829 1.01352 1.02577 1.20509 0.96173 0.92873 1.02364 1.19836 0.99383 0.96157 0.93277 1.20995 1.00245 0.95051 0.97408 1.21000 0.96320 0.93784 0.97990 1.19309 1.00053 0.93871 0.93502 1.20208 0.95575 0.92009 1.00718 0.88876 1.21854 0.94367 1.02502 1.01114 1.19720 0.87012 0.80077 0.80114 1.90810 1.27630 1.72447 1.46953 1.49411 1.25180 1.05003 1.57245 1.23416 0.92453 0.89486 0.97900 1.22695 0.97070 0.98415 0.95036 0.89184 1.21845 0.97609 1.00470 0.95546 1.20711 0.88558 0.94246 0.94331 1.43458 1.27911 1.38050 1.21241 1.19101 0.91527 1.11153 1.16255 0.92063 1.24889 0.95680 0.98523 0.99491 1.70010 0.99472 1.36715 1.48587 0.86299 0.78011 0.84243 0.78645 1.20506 1.21465 1.22001 1.20158 0.91024 1.02556 0.82170 1.22474 0.95027 0.83390 0.97508 0.91379 1.20900 1.00202 0.94944 0.96953 1.20827 1.01361 0.94944 0.97176 0.92657 0.92590 0.92315 0.91392 0.91254 0.86365 0.85872 0.91520 0.91911 0.91642 0.90729 0.90814 0.92800 0.92040 0.96387 0.92702 0.93913 0.95474 0.87812 0.86544 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.08 -0.89 6.07 -27.88 -0.17 -1.06 16 3 C -0.09 -1.19 5.13 -104.62 -0.54 -1.73 16 4 C -0.12 -1.87 9.70 -39.58 -0.38 -2.25 16 5 C -0.07 -1.27 7.93 -39.58 -0.31 -1.58 16 6 C -0.07 -1.06 4.40 -104.62 -0.46 -1.52 16 7 C -0.06 -0.95 2.80 -92.92 -0.26 -1.21 16 8 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 9 C -0.14 -1.80 8.89 37.16 0.33 -1.47 16 10 C 0.54 10.62 7.21 -10.98 -0.08 10.54 16 11 O -0.51 -12.59 14.36 5.56 0.08 -12.51 16 12 N -0.63 -11.23 3.28 -188.01 -0.62 -11.84 16 13 C 0.09 1.17 7.39 -11.53 -0.09 1.09 16 14 C -0.11 -1.69 4.57 -90.44 -0.41 -2.10 16 15 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 16 C -0.12 -1.87 5.69 -26.62 -0.15 -2.02 16 17 C 0.15 3.05 6.46 -3.95 -0.03 3.02 16 18 N -0.58 -14.88 3.03 -175.05 -0.53 -15.41 16 19 C -0.25 -7.17 9.53 -15.06 -0.14 -7.32 16 20 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 21 C 0.01 0.38 4.94 -17.43 -0.09 0.29 16 22 N -0.90 -27.71 10.94 55.49 0.61 -27.11 16 23 Si 0.90 23.55 29.58 -169.99 -5.03 18.52 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 26 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 27 C 0.17 4.17 4.59 -5.55 -0.03 4.14 16 28 C 0.12 2.29 3.98 -77.94 -0.31 1.98 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 C -0.11 -1.55 9.67 -39.58 -0.38 -1.93 16 31 C -0.13 -1.64 9.70 -39.59 -0.38 -2.03 16 32 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.12 2.36 7.52 -52.49 -0.39 1.97 16 39 H 0.07 0.78 5.23 -51.93 -0.27 0.50 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.96 7.39 -51.93 -0.38 0.57 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.82 5.64 -51.93 -0.29 0.53 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 1.12 7.87 -51.93 -0.41 0.71 16 48 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.03 0.74 8.00 -51.93 -0.42 0.32 16 50 H 0.10 3.07 4.95 -51.93 -0.26 2.81 16 51 H 0.12 1.33 7.95 -52.49 -0.42 0.91 16 52 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -34.56 402.88 -11.62 -46.17 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.69 Total: 2.52 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -3.51 Total: -6.42 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.54 Total: -54.35 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.03 Total: 18.52 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.56 -11.62 -46.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084723932.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.004 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.15 seconds