Wall clock time and date at job start Wed Apr 1 2020 02:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.46995 * 2 1 4 4 C 1.38237 * 120.00404 * 269.72139 * 3 2 1 5 5 C 1.38233 * 120.00472 * 179.78633 * 4 3 2 6 6 C 1.38237 * 119.99387 * 0.45209 * 5 4 3 7 7 C 1.50701 * 119.99801 * 179.83033 * 6 5 4 8 8 C 1.52998 * 109.47217 * 269.97887 * 7 6 5 9 9 C 1.50701 * 109.47217 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99614 * 359.97438 * 9 8 7 11 11 N 1.34768 * 119.99884 * 179.97438 * 9 8 7 12 12 C 1.47287 * 136.54465 * 0.02562 * 11 9 8 13 13 C 1.54087 * 87.60765 * 151.34931 * 12 11 9 14 14 H 1.08999 * 115.04732 * 141.62976 * 13 12 11 15 15 C 1.53063 * 111.39085 * 273.97699 * 13 12 11 16 16 C 1.52008 * 109.69049 * 142.51507 * 15 13 12 17 17 N 1.46532 * 108.10500 * 301.56130 * 16 15 13 18 18 C 1.36940 * 119.73975 * 236.29207 * 17 16 15 19 19 H 1.08004 * 119.99831 * 25.20375 * 18 17 16 20 20 C 1.38813 * 120.00392 * 205.20058 * 18 17 16 21 21 N 1.31618 * 119.99739 * 14.49313 * 20 18 17 22 22 Si 1.86795 * 120.00080 * 194.49324 * 20 18 17 23 23 H 1.48501 * 109.47277 * 60.00286 * 22 20 18 24 24 H 1.48501 * 109.47343 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47172 * 300.00062 * 22 20 18 26 26 C 1.45699 * 120.52438 * 56.32235 * 17 16 15 27 27 C 1.46470 * 136.54210 * 179.62276 * 11 9 8 28 28 H 1.09004 * 111.43976 * 96.40405 * 27 11 9 29 29 C 1.38233 * 120.00428 * 359.80721 * 6 5 4 30 30 C 1.38234 * 119.99855 * 90.00273 * 3 2 1 31 31 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46945 * 299.99613 * 1 2 3 33 33 H 1.09003 * 109.47218 * 59.99763 * 1 2 3 34 34 H 1.08999 * 109.46945 * 240.00387 * 2 1 3 35 35 H 1.08995 * 109.47308 * 120.00558 * 2 1 3 36 36 H 1.08002 * 119.99362 * 0.02562 * 4 3 2 37 37 H 1.08000 * 120.00391 * 180.28058 * 5 4 3 38 38 H 1.09005 * 109.47156 * 29.97820 * 7 6 5 39 39 H 1.09004 * 109.47256 * 149.97312 * 7 6 5 40 40 H 1.09001 * 109.46544 * 299.99866 * 8 7 6 41 41 H 1.08999 * 109.47041 * 59.99679 * 8 7 6 42 42 H 1.08998 * 113.53260 * 266.03031 * 12 11 9 43 43 H 1.09000 * 113.53009 * 36.66915 * 12 11 9 44 44 H 1.09004 * 109.51703 * 262.32153 * 15 13 12 45 45 H 1.09000 * 109.51606 * 22.47494 * 15 13 12 46 46 H 1.09002 * 109.88052 * 181.86033 * 16 15 13 47 47 H 1.08996 * 109.67733 * 61.14605 * 16 15 13 48 48 H 0.97001 * 120.00019 * 179.97438 * 21 20 18 49 49 H 1.09001 * 108.79050 * 199.09451 * 26 17 16 50 50 H 1.08998 * 108.79515 * 80.88001 * 26 17 16 51 51 H 1.08002 * 120.00295 * 180.02562 * 29 6 5 52 52 H 1.08003 * 119.99905 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7247 3.3754 -1.1971 6 6 2.9543 4.0272 0.0001 7 6 3.4556 5.4484 0.0001 8 6 4.9856 5.4495 0.0012 9 6 5.4870 6.8706 0.0018 10 8 4.6982 7.7919 0.0011 11 7 6.8118 7.1178 0.0033 12 6 8.0486 6.3180 0.0041 13 6 8.7290 7.4878 -0.7327 14 1 9.7567 7.6885 -0.4302 15 6 8.5216 7.3905 -2.2461 16 6 8.3205 8.7811 -2.8260 17 7 7.1598 9.3858 -2.1669 18 6 6.1087 9.8358 -2.9205 19 1 5.9231 9.4116 -3.8962 20 6 5.2816 10.8371 -2.4303 21 7 5.6570 11.5500 -1.3895 22 14 3.6359 11.1728 -3.2478 23 1 2.7945 9.9508 -3.1869 24 1 2.9490 12.2831 -2.5402 25 1 3.8562 11.5520 -4.6666 26 6 7.1155 9.5127 -0.7161 27 6 7.6722 8.3031 -0.0023 28 1 7.9956 8.5655 1.0051 29 6 2.7235 3.3757 1.1972 30 6 2.2627 2.0724 1.1972 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.0921 1.5600 -2.1324 37 1 2.9047 3.8845 -2.1324 38 1 3.0925 5.9618 -0.8902 39 1 3.0913 5.9622 0.8898 40 1 5.3486 4.9360 0.8915 41 1 5.3499 4.9357 -0.8885 42 1 8.4506 6.1392 1.0013 43 1 7.9794 5.4089 -0.5933 44 1 9.3988 6.9345 -2.7053 45 1 7.6423 6.7811 -2.4548 46 1 8.1397 8.7128 -3.8988 47 1 9.2064 9.3881 -2.6399 48 1 5.0793 12.2499 -1.0472 49 1 6.0800 9.6566 -0.4077 50 1 7.6919 10.3899 -0.4225 51 1 2.9025 3.8851 2.1326 52 1 2.0823 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084826116.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:43 Heat of formation + Delta-G solvation = 39.459922 kcal Electronic energy + Delta-G solvation = -30195.508964 eV Core-core repulsion = 26354.255257 eV Total energy + Delta-G solvation = -3841.253707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.50313 -39.65930 -37.78701 -35.21106 -35.11388 -32.48030 -32.13228 -31.00506 -30.10184 -29.62262 -28.22349 -26.89232 -24.94215 -23.78668 -23.05415 -22.81136 -22.17890 -21.03030 -20.49634 -19.52855 -17.70753 -17.01498 -16.19656 -16.02267 -15.76404 -15.64557 -15.27620 -15.04900 -14.59891 -14.12187 -13.95274 -13.84697 -13.63957 -13.41987 -13.33802 -13.18761 -13.13390 -12.79852 -12.49577 -12.38791 -12.16370 -11.91618 -11.84167 -11.53798 -11.51641 -11.41053 -11.07140 -11.05220 -10.87701 -10.74626 -10.60692 -10.60144 -10.44609 -10.15408 -9.83285 -9.73454 -9.51552 -8.99876 -8.91661 -8.54233 -8.24326 -8.04079 -6.54923 -5.61178 -3.03072 1.23827 1.32666 3.29794 3.34910 3.50236 3.56278 3.59577 3.67707 4.52385 4.62576 4.64158 4.70158 4.72545 4.91061 4.92554 5.07706 5.11750 5.17787 5.24731 5.27897 5.29737 5.41727 5.44615 5.47666 5.54526 5.57226 5.60607 5.64861 5.68260 5.70904 5.77983 5.87255 5.88401 5.93990 5.98313 6.09015 6.17102 6.20635 6.32872 6.35525 6.40136 6.42616 6.50041 6.57310 6.63346 6.65045 6.82413 6.94171 7.03560 7.54562 7.81855 7.98642 8.42690 8.62209 8.85799 9.40190 10.04631 10.52095 11.46964 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.002834 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.782208 B = 9879.318024 C =11137.942913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.078 4.078 7 C -0.068 4.068 8 C -0.123 4.123 9 C 0.537 3.463 10 O -0.516 6.516 11 N -0.634 5.634 12 C 0.096 3.904 13 C -0.114 4.114 14 H 0.090 0.910 15 C -0.113 4.113 16 C 0.147 3.853 17 N -0.585 5.585 18 C -0.252 4.252 19 H 0.061 0.939 20 C 0.011 3.989 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.167 3.833 27 C 0.118 3.882 28 H 0.070 0.930 29 C -0.114 4.114 30 C -0.118 4.118 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.018 0.982 48 H 0.252 0.748 49 H 0.104 0.896 50 H 0.028 0.972 51 H 0.121 0.879 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 -22.346 5.361 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.078 4.078 7 C -0.105 4.105 8 C -0.163 4.163 9 C 0.326 3.674 10 O -0.391 6.391 11 N -0.371 5.371 12 C -0.028 4.028 13 C -0.133 4.133 14 H 0.108 0.892 15 C -0.152 4.152 16 C 0.021 3.979 17 N -0.307 5.307 18 C -0.382 4.382 19 H 0.079 0.921 20 C -0.187 4.187 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.041 3.959 27 C 0.013 3.987 28 H 0.088 0.912 29 C -0.132 4.132 30 C -0.136 4.136 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.036 0.964 48 H 0.062 0.938 49 H 0.122 0.878 50 H 0.046 0.954 51 H 0.139 0.861 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.222 -21.728 5.454 22.436 hybrid contribution -0.771 0.094 -0.203 0.803 sum -1.993 -21.634 5.250 22.351 Atomic orbital electron populations 1.21752 0.94833 1.01536 1.02304 1.20519 0.96121 0.92824 1.02626 1.19857 0.99885 0.96220 0.93293 1.21000 1.00131 0.94906 0.97408 1.21124 0.99299 0.94671 0.97924 1.19980 0.98569 0.96136 0.93121 1.20364 0.93566 0.91775 1.04814 1.21525 0.96300 0.94768 1.03670 1.19940 0.79929 0.90927 0.76625 1.90789 1.53456 1.46261 1.48576 1.49483 1.03078 1.11015 1.73543 1.23281 0.83769 0.96121 0.99588 1.22695 0.97982 0.96056 0.96569 0.89156 1.21616 1.00251 1.00635 0.92731 1.20528 0.90559 0.90909 0.95936 1.43455 1.16045 1.70187 1.01030 1.19030 1.04620 1.13835 1.00685 0.92135 1.24913 0.99513 0.95947 0.98354 1.69997 1.36267 1.22106 1.26533 0.86384 0.84699 0.77424 0.78300 1.21020 1.21721 1.21248 1.20194 1.03150 0.89672 0.82929 1.22559 0.87159 0.90488 0.98450 0.91237 1.21067 0.99715 0.94720 0.97717 1.20975 1.00319 0.94927 0.97359 0.92532 0.92570 0.92531 0.91188 0.91226 0.86314 0.85887 0.89858 0.90234 0.89787 0.89526 0.90676 0.91217 0.92815 0.92129 0.92631 0.96406 0.93797 0.87831 0.95444 0.86099 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.08 -0.62 6.07 -27.88 -0.17 -0.79 16 3 C -0.09 -0.91 5.13 -104.63 -0.54 -1.44 16 4 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 5 C -0.11 -1.33 9.70 -39.58 -0.38 -1.71 16 6 C -0.08 -0.97 5.13 -104.62 -0.54 -1.51 16 7 C -0.07 -0.97 4.63 -27.88 -0.13 -1.10 16 8 C -0.12 -1.76 5.54 -27.88 -0.15 -1.91 16 9 C 0.54 10.45 8.01 -10.99 -0.09 10.36 16 10 O -0.52 -12.75 15.23 5.55 0.08 -12.67 16 11 N -0.63 -11.43 3.34 -187.87 -0.63 -12.06 16 12 C 0.10 1.27 7.78 -11.54 -0.09 1.18 16 13 C -0.11 -1.74 4.58 -90.45 -0.41 -2.15 16 14 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.11 -1.88 5.60 -27.20 -0.15 -2.03 16 16 C 0.15 3.07 6.44 -4.53 -0.03 3.04 16 17 N -0.58 -15.07 3.02 -175.60 -0.53 -15.60 16 18 C -0.25 -7.28 9.53 -15.06 -0.14 -7.43 16 19 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 20 C 0.01 0.33 4.94 -17.43 -0.09 0.25 16 21 N -0.90 -27.80 10.94 55.49 0.61 -27.19 16 22 Si 0.90 23.60 29.58 -169.99 -5.03 18.58 16 23 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 C 0.17 4.19 4.59 -5.44 -0.02 4.17 16 27 C 0.12 2.26 4.02 -77.84 -0.31 1.95 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 30 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 39 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.10 7.68 -51.93 -0.40 0.71 16 46 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.10 3.07 4.96 -51.93 -0.26 2.81 16 50 H 0.03 0.75 7.99 -51.93 -0.42 0.33 16 51 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 52 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 412.73 15.07 6.22 6.22 Total: -1.00 -34.56 412.73 -12.35 -46.91 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -9.04 Total: 0.42 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -4.04 Total: -4.60 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.55 Total: -54.86 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.03 Total: 18.58 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.56 -12.35 -46.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084826116.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.372 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds