Wall clock time and date at job start Wed Apr 1 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38236 * 119.99908 * 2 1 4 4 C 1.38235 * 119.99734 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.99948 * 359.95675 * 4 3 2 6 6 C 1.50709 * 119.99676 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.47297 * 89.99796 * 6 5 4 8 8 H 1.08993 * 109.47349 * 54.99946 * 7 6 5 9 9 C 1.53004 * 109.46967 * 294.99524 * 7 6 5 10 10 C 1.50700 * 109.46872 * 175.00211 * 7 6 5 11 11 O 1.21281 * 120.00458 * 359.97438 * 10 7 6 12 12 N 1.34778 * 120.00052 * 180.02562 * 10 7 6 13 13 C 1.47814 * 135.01113 * 359.97438 * 12 10 7 14 14 C 1.54650 * 85.79052 * 153.82976 * 13 12 10 15 15 H 1.08999 * 114.44099 * 140.42732 * 14 13 12 16 16 C 1.53018 * 110.83706 * 270.22814 * 14 13 12 17 17 C 1.53096 * 109.45022 * 143.88863 * 16 14 13 18 18 N 1.46621 * 108.01112 * 301.02986 * 17 16 14 19 19 C 1.36939 * 119.89195 * 237.30427 * 18 17 16 20 20 H 1.08000 * 119.99388 * 25.03225 * 19 18 17 21 21 C 1.38806 * 119.99906 * 205.30578 * 19 18 17 22 22 N 1.31618 * 119.99920 * 15.31666 * 21 19 18 23 23 Si 1.86799 * 119.99853 * 195.31264 * 21 19 18 24 24 H 1.48502 * 109.46986 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47101 * 120.00191 * 23 21 19 26 26 H 1.48504 * 109.47190 * 240.00312 * 23 21 19 27 27 C 1.45677 * 120.21688 * 57.57514 * 18 17 16 28 28 C 1.46823 * 135.01515 * 180.02562 * 12 10 7 29 29 H 1.09000 * 111.56275 * 94.46018 * 28 12 10 30 30 C 1.38228 * 120.00522 * 0.27340 * 5 4 3 31 31 C 1.38233 * 119.99705 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46941 * 89.99789 * 1 2 3 33 33 H 1.08999 * 109.46794 * 209.99815 * 1 2 3 34 34 H 1.09000 * 109.46731 * 329.99642 * 1 2 3 35 35 H 1.07995 * 119.99893 * 0.02562 * 3 2 1 36 36 H 1.08002 * 119.99695 * 179.97438 * 4 3 2 37 37 H 1.08997 * 109.46809 * 329.99336 * 6 5 4 38 38 H 1.09001 * 109.46518 * 209.99878 * 6 5 4 39 39 H 1.09005 * 109.46678 * 179.97438 * 9 7 6 40 40 H 1.08993 * 109.47431 * 300.00372 * 9 7 6 41 41 H 1.09003 * 109.47071 * 60.00808 * 9 7 6 42 42 H 1.08996 * 113.82136 * 39.61156 * 13 12 10 43 43 H 1.08997 * 113.92667 * 268.05634 * 13 12 10 44 44 H 1.09003 * 109.47206 * 23.89727 * 16 14 13 45 45 H 1.08995 * 109.47241 * 263.88817 * 16 14 13 46 46 H 1.08995 * 109.75960 * 181.39964 * 17 16 14 47 47 H 1.09003 * 109.79185 * 60.67705 * 17 16 14 48 48 H 0.96997 * 119.99424 * 179.97438 * 22 21 19 49 49 H 1.08999 * 108.71318 * 81.49592 * 27 18 17 50 50 H 1.09001 * 108.71427 * 199.50767 * 27 18 17 51 51 H 1.07996 * 120.00662 * 179.73193 * 30 5 4 52 52 H 1.07995 * 120.00463 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0002 6 6 5.7788 0.0000 -0.0002 7 6 6.2888 0.0005 1.4422 8 1 5.8542 -0.8410 1.9816 9 6 5.8841 1.3082 2.1258 10 6 7.7907 -0.1232 1.4440 11 8 8.3938 -0.2044 0.3949 12 7 8.4638 -0.1448 2.6115 13 6 8.0846 -0.0716 4.0383 14 6 9.3906 -0.8548 4.3079 15 1 9.9375 -0.5286 5.1925 16 6 9.1381 -2.3635 4.2709 17 6 10.3487 -3.0680 3.6528 18 7 10.5433 -2.5331 2.3016 19 6 10.5392 -3.3798 1.2253 20 1 10.0154 -4.3226 1.2820 21 6 11.2131 -3.0289 0.0637 22 7 12.0935 -2.0507 0.0835 23 14 10.8705 -3.9451 -1.5278 24 1 9.8462 -4.9926 -1.2853 25 1 10.3701 -2.9913 -2.5501 26 1 12.1225 -4.5793 -2.0132 27 6 10.7470 -1.1047 2.1008 28 6 9.8776 -0.2498 2.9933 29 1 10.3257 0.7323 3.1445 30 6 3.5806 -1.1971 -0.0050 31 6 2.1982 -1.1972 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6582 2.1324 0.0004 36 1 4.1206 2.1325 -0.0010 37 1 6.1420 0.8898 -0.5144 38 1 6.1420 -0.8902 -0.5137 39 1 6.2471 1.3083 3.1536 40 1 6.3186 2.1498 1.5864 41 1 4.7978 1.3977 2.1246 42 1 7.1794 -0.6277 4.2823 43 1 8.0859 0.9397 4.4447 44 1 8.2521 -2.5690 3.6700 45 1 8.9825 -2.7308 5.2852 46 1 10.1639 -4.1409 3.6012 47 1 11.2356 -2.8755 4.2565 48 1 12.5646 -1.8058 -0.7282 49 1 11.7931 -0.8697 2.2967 50 1 10.5257 -0.8626 1.0613 51 1 4.1205 -2.1324 -0.0091 52 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084855777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:08 Heat of formation + Delta-G solvation = 38.196576 kcal Electronic energy + Delta-G solvation = -30949.589787 eV Core-core repulsion = 27108.281297 eV Total energy + Delta-G solvation = -3841.308490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.47372 -39.62517 -37.88435 -35.15466 -35.05652 -32.39422 -31.98849 -31.00595 -30.11252 -29.11517 -27.98085 -26.90169 -25.53760 -23.85306 -23.47779 -22.74986 -22.12621 -20.98478 -20.56972 -19.28553 -17.73392 -16.95597 -16.18664 -15.73793 -15.67876 -15.58205 -15.41858 -15.03985 -14.52140 -14.06984 -14.00302 -13.68587 -13.57210 -13.45537 -13.20943 -13.13960 -12.90737 -12.62555 -12.51877 -12.41325 -12.13897 -12.05118 -11.96434 -11.79647 -11.44554 -11.18981 -11.09254 -11.01234 -10.94475 -10.77502 -10.64594 -10.57852 -10.41789 -10.14065 -9.83564 -9.77580 -9.54739 -8.98925 -8.82173 -8.51037 -8.25385 -8.02439 -6.56635 -5.62939 -3.04370 1.25090 1.33336 3.28835 3.34005 3.49331 3.56788 3.58441 3.68406 4.58267 4.63017 4.70225 4.74870 4.76377 4.92780 4.98644 5.02728 5.10490 5.17439 5.26823 5.35757 5.39603 5.43750 5.46109 5.51888 5.56097 5.59983 5.61593 5.65637 5.72310 5.77450 5.80684 5.86057 5.93167 6.00580 6.02982 6.16586 6.17804 6.25316 6.31986 6.35487 6.40748 6.41494 6.49344 6.56896 6.63407 6.66590 6.81379 6.95478 7.02447 7.54362 7.80776 7.97763 8.39494 8.60195 8.86234 9.38481 10.02872 10.51073 11.45286 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.003355 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.017550 B = 8344.578105 C = 9611.826825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.122 4.122 4 C -0.112 4.112 5 C -0.076 4.076 6 C -0.064 4.064 7 C -0.096 4.096 8 H 0.090 0.910 9 C -0.143 4.143 10 C 0.537 3.463 11 O -0.519 6.519 12 N -0.628 5.628 13 C 0.096 3.904 14 C -0.110 4.110 15 H 0.084 0.916 16 C -0.116 4.116 17 C 0.147 3.853 18 N -0.585 5.585 19 C -0.252 4.252 20 H 0.063 0.937 21 C 0.011 3.989 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.280 1.280 25 H -0.288 1.288 26 H -0.292 1.292 27 C 0.166 3.834 28 C 0.124 3.876 29 H 0.070 0.930 30 C -0.112 4.112 31 C -0.119 4.119 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.019 0.981 48 H 0.251 0.749 49 H 0.030 0.970 50 H 0.104 0.896 51 H 0.123 0.877 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.368 7.611 7.652 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.140 4.140 4 C -0.130 4.130 5 C -0.076 4.076 6 C -0.102 4.102 7 C -0.118 4.118 8 H 0.108 0.892 9 C -0.201 4.201 10 C 0.325 3.675 11 O -0.394 6.394 12 N -0.365 5.365 13 C -0.028 4.028 14 C -0.130 4.130 15 H 0.103 0.897 16 C -0.155 4.155 17 C 0.020 3.980 18 N -0.307 5.307 19 C -0.382 4.382 20 H 0.080 0.920 21 C -0.188 4.188 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.220 1.220 27 C 0.040 3.960 28 C 0.020 3.980 29 H 0.088 0.912 30 C -0.130 4.130 31 C -0.137 4.137 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.061 0.939 49 H 0.048 0.952 50 H 0.122 0.878 51 H 0.141 0.859 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.048 7.631 6.715 21.590 hybrid contribution -0.210 -0.280 -0.777 0.852 sum -19.258 7.351 5.938 21.451 Atomic orbital electron populations 1.20768 0.91493 1.02535 1.02116 1.19883 0.95869 0.93313 1.00679 1.20984 0.94160 0.97337 1.01494 1.21066 0.93965 0.97690 1.00247 1.19940 0.95723 0.93086 0.98847 1.20432 0.89666 1.04688 0.95417 1.21150 0.92896 1.00083 0.97623 0.89190 1.21849 1.01848 0.96036 1.00356 1.19989 0.88686 0.76477 0.82327 1.90774 1.69812 1.48606 1.30179 1.49805 1.09527 1.72806 1.04331 1.23529 0.98788 0.99406 0.81061 1.22868 0.95755 0.96692 0.97644 0.89739 1.21847 1.01197 0.93007 0.99488 1.20741 0.93609 0.96278 0.87343 1.43489 1.84428 1.02051 1.00757 1.19110 1.26112 1.01149 0.91780 0.91961 1.24919 0.96276 0.98602 0.99002 1.70022 1.26033 1.31765 1.26882 0.86267 0.77288 0.78958 0.84465 1.20509 1.21472 1.21960 1.20170 0.93761 0.82207 0.99835 1.22710 0.83488 0.98718 0.93078 0.91248 1.21134 0.94076 0.97964 0.99790 1.21012 0.94161 0.97415 1.01119 0.91404 0.91709 0.91754 0.86376 0.86094 0.90379 0.89774 0.92231 0.92374 0.91570 0.90832 0.90658 0.92139 0.92821 0.92635 0.96281 0.93875 0.95221 0.87810 0.85890 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.10 -0.97 5.88 -104.62 -0.62 -1.58 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 4 C -0.11 -1.23 7.96 -39.59 -0.32 -1.55 16 5 C -0.08 -0.95 4.71 -104.62 -0.49 -1.44 16 6 C -0.06 -0.94 4.19 -27.88 -0.12 -1.05 16 7 C -0.10 -1.39 2.56 -91.77 -0.24 -1.63 16 8 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 9 C -0.14 -1.65 8.64 37.16 0.32 -1.33 16 10 C 0.54 10.40 7.32 -10.98 -0.08 10.32 16 11 O -0.52 -12.77 15.06 5.56 0.08 -12.69 16 12 N -0.63 -11.18 3.30 -173.78 -0.57 -11.75 16 13 C 0.10 1.25 6.23 -3.00 -0.02 1.23 16 14 C -0.11 -1.68 4.39 -89.96 -0.40 -2.07 16 15 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 16 C -0.12 -1.92 5.66 -26.67 -0.15 -2.07 16 17 C 0.15 3.05 6.47 -3.93 -0.03 3.02 16 18 N -0.58 -15.02 3.02 -174.88 -0.53 -15.55 16 19 C -0.25 -7.25 9.54 -15.06 -0.14 -7.39 16 20 H 0.06 1.77 7.85 -52.49 -0.41 1.36 16 21 C 0.01 0.31 4.93 -17.43 -0.09 0.23 16 22 N -0.90 -27.66 10.99 55.49 0.61 -27.05 16 23 Si 0.90 23.50 29.58 -169.99 -5.03 18.47 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 C 0.17 4.17 4.64 -5.44 -0.03 4.15 16 28 C 0.12 2.38 4.23 -69.41 -0.29 2.08 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 C -0.11 -1.35 9.70 -39.58 -0.38 -1.73 16 31 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.19 8.04 -52.49 -0.42 0.77 16 37 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 38 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 39 H 0.06 0.63 6.23 -51.93 -0.32 0.31 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.68 6.27 -51.93 -0.33 0.36 16 42 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16 43 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 44 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.06 1.14 7.88 -51.93 -0.41 0.73 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.03 0.81 7.97 -51.93 -0.41 0.39 16 50 H 0.10 3.06 4.91 -51.93 -0.25 2.81 16 51 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 52 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 404.23 15.07 6.09 6.09 Total: -1.00 -34.36 404.23 -11.63 -46.00 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.82 Total: 1.01 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.46 Total: -4.53 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.49 Total: -54.36 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.03 Total: 18.47 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.36 -11.63 -46.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084855777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.196 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds