Wall clock time and date at job start Wed Apr 1 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38232 * 120.00154 * 2 1 4 4 C 1.38240 * 119.99743 * 179.73603 * 3 2 1 5 5 C 1.38243 * 119.99828 * 0.53843 * 4 3 2 6 6 C 1.50696 * 119.99544 * 179.76139 * 5 4 3 7 7 C 1.53005 * 109.47245 * 269.97563 * 6 5 4 8 8 H 1.08996 * 109.47143 * 305.00242 * 7 6 5 9 9 C 1.52995 * 109.46726 * 65.00496 * 7 6 5 10 10 C 1.50698 * 109.46871 * 185.00091 * 7 6 5 11 11 O 1.21276 * 120.00394 * 0.02562 * 10 7 6 12 12 N 1.34781 * 119.99740 * 179.97438 * 10 7 6 13 13 C 1.47286 * 136.54339 * 0.02562 * 12 10 7 14 14 C 1.54081 * 87.60717 * 151.34636 * 13 12 10 15 15 H 1.09003 * 115.04513 * 141.62255 * 14 13 12 16 16 C 1.53056 * 111.39525 * 273.10420 * 14 13 12 17 17 C 1.53260 * 109.02558 * 141.92367 * 16 14 13 18 18 N 1.46533 * 108.74264 * 302.53648 * 17 16 14 19 19 C 1.36940 * 119.73947 * 236.08068 * 18 17 16 20 20 H 1.08002 * 119.99350 * 152.12007 * 19 18 17 21 21 C 1.38806 * 120.00303 * 332.12463 * 19 18 17 22 22 N 1.31616 * 120.00585 * 160.46401 * 21 19 18 23 23 Si 1.86800 * 120.00003 * 340.46308 * 21 19 18 24 24 H 1.48498 * 109.47051 * 95.14473 * 23 21 19 25 25 H 1.48496 * 109.47519 * 215.14921 * 23 21 19 26 26 H 1.48508 * 109.47135 * 335.14968 * 23 21 19 27 27 C 1.45703 * 120.52210 * 56.10865 * 18 17 16 28 28 C 1.46464 * 136.54183 * 179.63000 * 12 10 7 29 29 H 1.09003 * 111.44005 * 96.40252 * 28 12 10 30 30 C 1.38232 * 119.99968 * 359.74262 * 5 4 3 31 31 C 1.38232 * 120.00266 * 359.97438 * 30 5 4 32 32 H 1.08993 * 109.47333 * 269.72959 * 1 2 3 33 33 H 1.09005 * 109.46470 * 29.72457 * 1 2 3 34 34 H 1.08994 * 109.47130 * 149.72190 * 1 2 3 35 35 H 1.07995 * 119.99845 * 359.97438 * 3 2 1 36 36 H 1.08000 * 119.99722 * 180.29530 * 4 3 2 37 37 H 1.09000 * 109.47660 * 29.97799 * 6 5 4 38 38 H 1.09005 * 109.47184 * 149.97878 * 6 5 4 39 39 H 1.08996 * 109.47547 * 299.99386 * 9 7 6 40 40 H 1.08996 * 109.47517 * 59.99975 * 9 7 6 41 41 H 1.09005 * 109.46592 * 180.02562 * 9 7 6 42 42 H 1.09000 * 113.53016 * 266.03240 * 13 12 10 43 43 H 1.09001 * 113.52604 * 36.59504 * 13 12 10 44 44 H 1.09003 * 109.51255 * 262.32158 * 16 14 13 45 45 H 1.09001 * 109.51488 * 22.48076 * 16 14 13 46 46 H 1.09007 * 109.74195 * 182.53135 * 17 16 14 47 47 H 1.09000 * 109.22687 * 62.23870 * 17 16 14 48 48 H 0.96993 * 120.00378 * 179.97438 * 22 21 19 49 49 H 1.09010 * 108.78762 * 199.09532 * 27 18 17 50 50 H 1.08996 * 108.78938 * 80.88090 * 27 18 17 51 51 H 1.07997 * 119.99728 * 180.02562 * 30 5 4 52 52 H 1.08002 * 120.00146 * 180.02562 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0055 5 6 4.2717 -0.0002 -0.0002 6 6 5.7787 -0.0002 0.0004 7 6 6.2893 0.0064 -1.4420 8 1 5.8549 -0.8329 -1.9850 9 6 5.8849 1.3169 -2.1200 10 6 7.7912 -0.1175 -1.4437 11 8 8.3938 -0.2031 -0.3947 12 7 8.4646 -0.1341 -2.6111 13 6 8.1253 -0.0579 -4.0423 14 6 9.5109 0.5761 -4.2708 15 1 10.0171 0.2621 -5.1837 16 6 9.4694 2.0937 -4.0769 17 6 10.7608 2.5445 -3.3855 18 7 10.8883 1.8287 -2.1133 19 6 11.0225 2.5342 -0.9473 20 1 10.6771 2.1094 -0.0163 21 6 11.6022 3.7953 -0.9619 22 7 11.3967 4.6258 0.0382 23 14 12.6741 4.3139 -2.4012 24 1 11.8547 5.0713 -3.3810 25 1 13.7798 5.1749 -1.9100 26 1 13.2400 3.1075 -3.0569 27 6 10.8741 0.3721 -2.0791 28 6 9.8651 -0.2291 -3.0293 29 1 10.1368 -1.2541 -3.2817 30 6 3.5805 -1.1973 -0.0061 31 6 2.1982 -1.1973 -0.0057 32 1 -0.3633 -0.0048 1.0276 33 1 -0.3632 0.8925 -0.5096 34 1 -0.3633 -0.8874 -0.5181 35 1 1.6582 2.1324 -0.0004 36 1 4.1206 2.1323 0.0103 37 1 6.1419 0.8873 0.5184 38 1 6.1419 -0.8926 0.5102 39 1 4.7986 1.4065 -2.1188 40 1 6.3193 2.1562 -1.5770 41 1 6.2483 1.3214 -3.1477 42 1 8.0098 -1.0334 -4.5146 43 1 7.2963 0.6162 -4.2576 44 1 9.3757 2.5823 -5.0468 45 1 8.6166 2.3577 -3.4514 46 1 10.7242 3.6182 -3.2010 47 1 11.6113 2.3106 -4.0258 48 1 11.8022 5.5069 0.0282 49 1 10.6392 0.0470 -1.0655 50 1 11.8662 0.0051 -2.3420 51 1 4.1204 -2.1326 -0.0102 52 1 1.6581 -2.1325 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084855778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:12 Heat of formation + Delta-G solvation = 49.499641 kcal Electronic energy + Delta-G solvation = -30865.664547 eV Core-core repulsion = 27024.846195 eV Total energy + Delta-G solvation = -3840.818352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.85950 -39.69213 -38.10950 -35.55751 -35.15135 -32.41078 -31.81276 -31.10414 -31.02300 -29.35467 -28.09900 -27.19935 -25.55977 -23.84660 -23.60308 -22.83945 -22.43114 -21.18999 -20.72146 -19.56463 -17.71436 -17.16707 -16.47993 -15.86659 -15.72166 -15.60549 -15.50251 -15.19763 -15.05192 -14.50663 -14.06196 -13.79180 -13.64012 -13.54586 -13.49114 -13.25303 -12.83600 -12.72961 -12.61337 -12.56835 -12.28167 -12.16576 -12.02772 -11.95667 -11.80129 -11.43754 -11.16951 -11.13972 -11.04689 -10.89851 -10.85352 -10.81736 -10.62525 -10.16138 -9.87128 -9.61603 -9.37010 -9.09932 -8.97692 -8.61763 -8.53451 -8.25368 -6.86857 -5.83984 -3.20365 1.22796 1.31601 3.08073 3.12962 3.34591 3.52170 3.54723 3.65627 4.48897 4.51320 4.59440 4.68341 4.72713 4.88511 4.94418 4.96355 5.01260 5.04236 5.07991 5.18829 5.27588 5.34825 5.36923 5.38658 5.41697 5.49453 5.55963 5.56962 5.58645 5.69631 5.75238 5.81529 5.84403 5.88418 5.95101 6.00070 6.02204 6.06038 6.20547 6.26601 6.31050 6.33637 6.35356 6.38912 6.47859 6.62035 6.63501 6.66872 6.84141 6.93510 6.96242 8.10667 8.17551 8.47317 8.62429 9.08701 9.83459 10.16157 11.32228 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.002887 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.400392 B = 9697.001950 C =10382.678680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.109 4.109 5 C -0.077 4.077 6 C -0.064 4.064 7 C -0.092 4.092 8 H 0.088 0.912 9 C -0.149 4.149 10 C 0.549 3.451 11 O -0.525 6.525 12 N -0.631 5.631 13 C 0.093 3.907 14 C -0.112 4.112 15 H 0.093 0.907 16 C -0.117 4.117 17 C 0.128 3.872 18 N -0.595 5.595 19 C -0.249 4.249 20 H 0.086 0.914 21 C 0.019 3.981 22 N -0.911 5.911 23 Si 0.883 3.117 24 H -0.291 1.291 25 H -0.305 1.305 26 H -0.270 1.270 27 C 0.144 3.856 28 C 0.126 3.874 29 H 0.078 0.922 30 C -0.114 4.114 31 C -0.121 4.121 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.026 0.974 48 H 0.260 0.740 49 H 0.078 0.922 50 H 0.023 0.977 51 H 0.120 0.880 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.852 -11.601 -8.600 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.127 4.127 5 C -0.077 4.077 6 C -0.102 4.102 7 C -0.114 4.114 8 H 0.106 0.894 9 C -0.206 4.206 10 C 0.338 3.662 11 O -0.400 6.400 12 N -0.368 5.368 13 C -0.031 4.031 14 C -0.131 4.131 15 H 0.111 0.889 16 C -0.156 4.156 17 C 0.002 3.998 18 N -0.318 5.318 19 C -0.378 4.378 20 H 0.104 0.896 21 C -0.179 4.179 22 N -0.555 5.555 23 Si 0.715 3.285 24 H -0.220 1.220 25 H -0.234 1.234 26 H -0.195 1.195 27 C 0.018 3.982 28 C 0.022 3.978 29 H 0.096 0.904 30 C -0.132 4.132 31 C -0.139 4.139 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.044 0.956 48 H 0.070 0.930 49 H 0.097 0.903 50 H 0.041 0.959 51 H 0.138 0.862 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.611 -11.518 -7.691 23.199 hybrid contribution 0.580 0.324 -0.875 1.099 sum -18.030 -11.194 -8.566 22.886 Atomic orbital electron populations 1.20769 0.91479 1.02545 1.02148 1.19892 0.95889 0.93316 1.00580 1.21027 0.94200 0.97427 1.01135 1.21154 0.94018 0.97963 0.99520 1.19916 0.95636 0.93100 0.99048 1.20438 0.89784 1.04769 0.95199 1.21135 0.91996 1.00363 0.97879 0.89365 1.21933 1.01745 0.96194 1.00732 1.19944 0.88740 0.75878 0.81644 1.90728 1.69881 1.49259 1.30132 1.49379 1.09412 1.73227 1.04759 1.23424 0.98658 1.00064 0.80932 1.22709 0.95814 0.96893 0.97704 0.88888 1.21872 1.01512 0.92333 0.99931 1.21221 0.93806 0.97119 0.87672 1.43763 1.84782 1.00047 1.03235 1.18988 1.33152 0.98810 0.86825 0.89649 1.25264 0.99276 0.96686 0.96637 1.69836 1.45806 1.07052 1.32811 0.86946 0.81132 0.77890 0.82568 1.21951 1.23409 1.19492 1.20287 0.94094 0.84804 0.99061 1.22235 0.83783 0.98317 0.93497 0.90418 1.21053 0.94049 0.97683 1.00432 1.20978 0.94135 0.97353 1.01432 0.91371 0.91687 0.91762 0.86236 0.85757 0.89798 0.90189 0.91598 0.91519 0.91985 0.90385 0.90358 0.92186 0.91401 0.90877 0.95631 0.92966 0.90349 0.95943 0.86175 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.10 -0.93 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 4 C -0.11 -1.24 7.97 -39.58 -0.32 -1.55 16 5 C -0.08 -0.91 4.71 -104.62 -0.49 -1.41 16 6 C -0.06 -0.88 4.19 -27.88 -0.12 -1.00 16 7 C -0.09 -1.25 2.61 -91.77 -0.24 -1.49 16 8 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 9 C -0.15 -1.88 8.65 37.16 0.32 -1.56 16 10 C 0.55 9.67 7.34 -10.98 -0.08 9.59 16 11 O -0.52 -11.64 15.17 5.56 0.08 -11.56 16 12 N -0.63 -10.02 3.32 -187.90 -0.62 -10.65 16 13 C 0.09 1.08 7.39 -11.54 -0.09 0.99 16 14 C -0.11 -1.54 4.52 -90.46 -0.41 -1.95 16 15 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.12 -1.96 5.75 -26.57 -0.15 -2.11 16 17 C 0.13 2.76 4.11 -3.89 -0.02 2.74 16 18 N -0.60 -14.56 2.80 -174.83 -0.49 -15.05 16 19 C -0.25 -7.31 9.97 -15.06 -0.15 -7.46 16 20 H 0.09 2.80 8.00 -52.49 -0.42 2.38 16 21 C 0.02 0.57 5.23 -17.43 -0.09 0.48 16 22 N -0.91 -28.92 13.97 55.49 0.78 -28.14 16 23 Si 0.88 22.78 24.33 -169.99 -4.14 18.65 16 24 H -0.29 -7.20 6.70 56.52 0.38 -6.82 16 25 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 26 H -0.27 -6.76 6.45 56.52 0.36 -6.40 16 27 C 0.14 3.05 6.15 -5.44 -0.03 3.01 16 28 C 0.13 2.05 4.03 -77.84 -0.31 1.73 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 C -0.11 -1.22 9.70 -39.59 -0.38 -1.61 16 31 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.38 8.04 -52.49 -0.42 0.96 16 37 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 38 H 0.08 1.13 7.90 -51.93 -0.41 0.72 16 39 H 0.07 0.73 6.27 -51.93 -0.33 0.41 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.73 5.24 -51.93 -0.27 0.46 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.83 5.63 -51.93 -0.29 0.54 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.24 7.70 -51.93 -0.40 0.84 16 46 H 0.07 1.76 4.21 -51.93 -0.22 1.54 16 47 H 0.03 0.54 7.09 -51.93 -0.37 0.17 16 48 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 49 H 0.08 1.88 6.46 -51.92 -0.34 1.54 16 50 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 52 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -34.91 395.86 -10.57 -45.49 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.57 Total: 2.00 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -3.58 Total: -6.70 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.34 Total: -53.84 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.14 Total: 18.65 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.91 -10.57 -45.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084855778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.988 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds