Wall clock time and date at job start Wed Apr 1 2020 01:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 120.00091 * 2 1 4 4 C 1.38214 * 119.99914 * 179.81539 * 3 2 1 5 5 C 1.38256 * 120.00155 * 0.39221 * 4 3 2 6 6 C 1.38223 * 119.99620 * 359.86220 * 5 4 3 7 7 C 1.38210 * 120.00151 * 180.27966 * 2 1 3 8 8 C 1.50702 * 119.99811 * 359.97383 * 7 2 1 9 9 C 1.53004 * 109.47237 * 279.08358 * 8 7 2 10 10 H 1.09003 * 109.47020 * 55.08664 * 9 8 7 11 11 C 1.53003 * 109.46941 * 295.08603 * 9 8 7 12 12 C 1.50697 * 109.47296 * 175.08590 * 9 8 7 13 13 O 1.21280 * 119.99977 * 359.97438 * 12 9 8 14 14 N 1.34771 * 120.00257 * 180.02562 * 12 9 8 15 15 C 1.47293 * 136.54354 * 359.97438 * 14 12 9 16 16 C 1.54084 * 87.60617 * 151.36546 * 15 14 12 17 17 H 1.08998 * 115.04045 * 142.50455 * 16 15 14 18 18 C 1.53062 * 111.39401 * 273.97046 * 16 15 14 19 19 C 1.53145 * 109.21513 * 142.39764 * 18 16 15 20 20 N 1.46537 * 108.25275 * 301.59528 * 19 18 16 21 21 C 1.36937 * 119.73781 * 236.44059 * 20 19 18 22 22 H 1.08007 * 119.99945 * 28.62326 * 21 20 19 23 23 C 1.38817 * 120.00138 * 208.62333 * 21 20 19 24 24 N 1.31616 * 119.99743 * 10.20212 * 23 21 20 25 25 Si 1.86797 * 120.00002 * 190.20053 * 23 21 20 26 26 H 1.48501 * 109.47028 * 89.99943 * 25 23 21 27 27 H 1.48492 * 109.47017 * 209.99797 * 25 23 21 28 28 H 1.48502 * 109.47025 * 329.99876 * 25 23 21 29 29 C 1.45703 * 120.52546 * 56.41749 * 20 19 18 30 30 C 1.46465 * 136.54375 * 179.62295 * 14 12 9 31 31 H 1.09007 * 111.44067 * 96.38865 * 30 14 12 32 32 H 1.09004 * 109.47118 * 264.55543 * 1 2 3 33 33 H 1.08998 * 109.47450 * 144.56039 * 1 2 3 34 34 H 1.09004 * 109.47412 * 24.55405 * 1 2 3 35 35 H 1.07998 * 119.99993 * 359.97438 * 3 2 1 36 36 H 1.07996 * 119.99824 * 180.23143 * 4 3 2 37 37 H 1.07994 * 120.00431 * 179.83858 * 5 4 3 38 38 H 1.08004 * 119.99213 * 179.97438 * 6 5 4 39 39 H 1.08996 * 109.47235 * 39.08558 * 8 7 2 40 40 H 1.09001 * 109.47300 * 159.08536 * 8 7 2 41 41 H 1.09000 * 109.46700 * 175.57653 * 11 9 8 42 42 H 1.08999 * 109.46756 * 295.56859 * 11 9 8 43 43 H 1.08996 * 109.47404 * 55.57537 * 11 9 8 44 44 H 1.08994 * 113.52974 * 266.05153 * 15 14 12 45 45 H 1.08999 * 113.52633 * 36.61337 * 15 14 12 46 46 H 1.08999 * 109.51730 * 262.32347 * 18 16 15 47 47 H 1.09010 * 109.51300 * 22.42953 * 18 16 15 48 48 H 1.09007 * 109.70161 * 61.28221 * 19 18 16 49 49 H 1.08995 * 109.71030 * 181.85469 * 19 18 16 50 50 H 0.97004 * 119.99955 * 180.02562 * 24 23 21 51 51 H 1.08999 * 108.78519 * 80.89622 * 29 20 19 52 52 H 1.08993 * 108.78740 * 199.11613 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0039 5 6 4.2717 0.0000 -0.0005 6 6 3.5805 -1.1970 -0.0058 7 6 2.1980 -1.1969 -0.0058 8 6 1.4445 -2.5020 -0.0116 9 6 0.9928 -2.8365 1.4115 10 1 0.4154 -2.0044 1.8144 11 6 2.2201 -3.0794 2.2922 12 6 0.1375 -4.0769 1.3885 13 8 -0.0890 -4.6380 0.3375 14 7 -0.3767 -4.5623 2.5359 15 6 -0.3434 -4.1953 3.9620 16 6 -1.7281 -4.8573 4.0982 17 1 -1.8909 -5.3988 5.0300 18 6 -2.8516 -3.8790 3.7468 19 6 -3.9580 -4.6295 2.9997 20 7 -3.3738 -5.2311 1.7980 21 6 -3.8998 -4.9392 0.5679 22 1 -4.3837 -3.9884 0.3993 23 6 -3.8109 -5.8651 -0.4625 24 7 -3.4064 -7.0921 -0.2115 25 14 -4.2655 -5.3696 -2.2053 26 1 -3.0616 -4.8497 -2.9020 27 1 -4.7881 -6.5521 -2.9357 28 1 -5.3082 -4.3130 -2.1634 29 6 -2.2374 -6.1372 1.9016 30 6 -1.2261 -5.6895 2.9273 31 1 -0.6312 -6.5379 3.2660 32 1 -0.3633 -0.0975 1.0231 33 1 -0.3634 -0.8372 -0.5959 34 1 -0.3634 0.9348 -0.4271 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1326 0.0076 37 1 5.3516 -0.0001 -0.0001 38 1 4.1206 -2.1323 -0.0096 39 1 0.5718 -2.4148 -0.6588 40 1 2.0940 -3.2950 -0.3824 41 1 1.9019 -3.2401 3.3223 42 1 2.7547 -3.9598 1.9355 43 1 2.8779 -2.2115 2.2463 44 1 0.4395 -4.7043 4.5241 45 1 -0.3554 -3.1191 4.1347 46 1 -3.2580 -3.4474 4.6615 47 1 -2.4576 -3.0845 3.1129 48 1 -4.3687 -5.4107 3.6394 49 1 -4.7476 -3.9336 2.7165 50 1 -3.3439 -7.7391 -0.9316 51 1 -2.6019 -7.1275 2.1744 52 1 -1.7493 -6.2006 0.9292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084858531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:16 Heat of formation + Delta-G solvation = 44.319828 kcal Electronic energy + Delta-G solvation = -31546.430162 eV Core-core repulsion = 27705.387197 eV Total energy + Delta-G solvation = -3841.042965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.61666 -39.74848 -37.87103 -35.16512 -34.75406 -32.74068 -32.11246 -31.03484 -30.09193 -28.72226 -27.23985 -26.89247 -26.45529 -23.92098 -23.57409 -22.44075 -21.95184 -20.99950 -20.42793 -19.32259 -17.72176 -16.96383 -16.31602 -15.96211 -15.72410 -15.60486 -15.43009 -14.88509 -14.48903 -14.04845 -13.92972 -13.66535 -13.33307 -13.29329 -13.18525 -13.11955 -12.88890 -12.58826 -12.49382 -12.34505 -12.13659 -12.11015 -11.91187 -11.80350 -11.41196 -11.24013 -11.10075 -10.97729 -10.84294 -10.67673 -10.66265 -10.57149 -10.41823 -10.15480 -9.82406 -9.76569 -9.47534 -8.87754 -8.82059 -8.57606 -8.26404 -8.03302 -6.50813 -5.61763 -3.07956 1.29245 1.32129 3.29168 3.35533 3.49406 3.54755 3.56920 3.70853 4.60051 4.62691 4.72001 4.75631 4.85532 4.92883 4.96081 5.06013 5.10451 5.23733 5.28889 5.39386 5.44096 5.48001 5.54755 5.60316 5.61960 5.63276 5.65253 5.73612 5.77572 5.80215 5.85165 5.91327 5.93880 5.99685 6.10806 6.16889 6.18369 6.24676 6.35382 6.41090 6.42502 6.42846 6.45717 6.57711 6.64280 6.70286 6.82576 6.97024 7.03345 7.55056 7.82950 7.97987 8.43162 8.63318 8.86132 9.40267 10.03310 10.52403 11.46027 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.003844 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.939455 B = 7282.975541 C = 8471.516026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.125 4.125 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.073 4.073 8 C -0.065 4.065 9 C -0.095 4.095 10 H 0.090 0.910 11 C -0.142 4.142 12 C 0.543 3.457 13 O -0.516 6.516 14 N -0.630 5.630 15 C 0.096 3.904 16 C -0.114 4.114 17 H 0.090 0.910 18 C -0.115 4.115 19 C 0.148 3.852 20 N -0.584 5.584 21 C -0.252 4.252 22 H 0.060 0.940 23 C 0.014 3.986 24 N -0.904 5.904 25 Si 0.900 3.100 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.168 3.832 30 C 0.119 3.881 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.018 0.982 49 H 0.055 0.945 50 H 0.251 0.749 51 H 0.029 0.971 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.410 13.149 8.726 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.130 4.130 7 C -0.073 4.073 8 C -0.103 4.103 9 C -0.117 4.117 10 H 0.108 0.892 11 C -0.199 4.199 12 C 0.332 3.668 13 O -0.390 6.390 14 N -0.367 5.367 15 C -0.028 4.028 16 C -0.133 4.133 17 H 0.108 0.892 18 C -0.154 4.154 19 C 0.022 3.978 20 N -0.307 5.307 21 C -0.382 4.382 22 H 0.078 0.922 23 C -0.185 4.185 24 N -0.549 5.549 25 Si 0.731 3.269 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.042 3.958 30 C 0.015 3.985 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.036 0.964 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.046 0.954 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.394 12.771 7.786 20.078 hybrid contribution 0.062 0.251 -0.800 0.841 sum 13.456 13.022 6.986 19.986 Atomic orbital electron populations 1.20906 0.91043 1.03139 1.02728 1.19841 0.96196 0.92555 0.99279 1.21023 0.94233 0.97365 1.01237 1.21071 0.94298 0.97884 1.01093 1.21082 0.99604 0.92579 1.01316 1.21071 0.93587 0.98070 1.00284 1.19802 0.93598 0.94627 0.99265 1.20447 1.00612 0.93451 0.95785 1.21145 0.96707 0.96682 0.97133 0.89158 1.21805 0.96838 1.02234 0.99065 1.19851 0.79383 0.85518 0.82080 1.90787 1.58677 1.60324 1.29246 1.49421 1.51125 1.30837 1.05302 1.23294 0.97286 1.00185 0.82003 1.22699 0.94127 0.98216 0.98244 0.89187 1.21835 0.96796 0.97460 0.99312 1.20722 0.93040 0.95039 0.89030 1.43427 1.31670 1.54111 1.01447 1.19063 1.33604 0.97951 0.87571 0.92230 1.25008 1.00105 0.94762 0.98645 1.69979 1.51312 1.02663 1.30921 0.86323 0.78033 0.77241 0.85331 1.21326 1.21832 1.20666 1.20151 0.86182 0.91257 0.98201 1.22493 0.92055 0.89215 0.94762 0.91376 0.91043 0.90561 0.91737 0.86301 0.86459 0.86403 0.86145 0.89458 0.90481 0.92296 0.92386 0.91633 0.90722 0.91275 0.92815 0.92206 0.96368 0.92691 0.93846 0.95350 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.00 36.00 0.32 -1.11 16 2 C -0.08 -0.95 5.88 -104.63 -0.62 -1.56 16 3 C -0.12 -1.28 9.68 -39.58 -0.38 -1.66 16 4 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 5 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.11 -1.25 8.56 -39.58 -0.34 -1.59 16 7 C -0.07 -0.91 4.44 -104.63 -0.46 -1.38 16 8 C -0.07 -0.95 3.64 -27.88 -0.10 -1.05 16 9 C -0.10 -1.37 2.56 -91.77 -0.24 -1.61 16 10 H 0.09 1.25 7.04 -51.93 -0.37 0.88 16 11 C -0.14 -1.66 8.84 37.16 0.33 -1.33 16 12 C 0.54 10.45 7.34 -10.99 -0.08 10.37 16 13 O -0.52 -12.66 15.17 5.56 0.08 -12.58 16 14 N -0.63 -11.19 3.28 -188.01 -0.62 -11.80 16 15 C 0.10 1.26 6.17 -11.53 -0.07 1.19 16 16 C -0.11 -1.72 4.57 -90.45 -0.41 -2.13 16 17 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 18 C -0.11 -1.89 5.69 -26.62 -0.15 -2.04 16 19 C 0.15 3.07 6.46 -3.95 -0.03 3.05 16 20 N -0.58 -14.93 3.02 -175.05 -0.53 -15.46 16 21 C -0.25 -7.23 9.49 -15.06 -0.14 -7.37 16 22 H 0.06 1.69 7.84 -52.48 -0.41 1.28 16 23 C 0.01 0.40 5.03 -17.43 -0.09 0.31 16 24 N -0.90 -27.58 10.92 55.49 0.61 -26.97 16 25 Si 0.90 23.34 29.57 -169.99 -5.03 18.32 16 26 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 29 C 0.17 4.19 4.57 -5.56 -0.03 4.17 16 30 C 0.12 2.27 3.98 -77.95 -0.31 1.96 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.81 7.56 -51.93 -0.39 0.42 16 33 H 0.08 1.03 6.32 -51.93 -0.33 0.70 16 34 H 0.06 0.65 8.05 -51.93 -0.42 0.24 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.20 8.04 -52.48 -0.42 0.78 16 39 H 0.09 1.45 6.23 -51.93 -0.32 1.13 16 40 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 41 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.07 7.68 -51.92 -0.40 0.68 16 48 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 49 H 0.05 1.13 7.89 -51.93 -0.41 0.72 16 50 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.03 0.77 7.95 -51.93 -0.41 0.36 16 52 H 0.10 2.99 5.09 -51.93 -0.26 2.72 16 LS Contribution 399.35 15.07 6.02 6.02 Total: -1.00 -34.07 399.35 -11.65 -45.72 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.60 Total: 1.85 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.59 Total: -5.09 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.54 Total: -54.24 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.03 Total: 18.32 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.07 -11.65 -45.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084858531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.036 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds