Wall clock time and date at job start Wed Apr 1 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 120.00091 * 2 1 4 4 C 1.38214 * 119.99914 * 179.81539 * 3 2 1 5 5 C 1.38256 * 120.00155 * 0.39221 * 4 3 2 6 6 C 1.38223 * 119.99620 * 359.86220 * 5 4 3 7 7 C 1.38210 * 120.00151 * 180.27966 * 2 1 3 8 8 C 1.50702 * 119.99811 * 359.97383 * 7 2 1 9 9 C 1.53004 * 109.47237 * 279.08358 * 8 7 2 10 10 H 1.09003 * 109.47020 * 55.08664 * 9 8 7 11 11 C 1.53003 * 109.46941 * 295.08603 * 9 8 7 12 12 C 1.50697 * 109.47296 * 175.08590 * 9 8 7 13 13 O 1.21280 * 119.99977 * 359.97438 * 12 9 8 14 14 N 1.34771 * 120.00257 * 180.02562 * 12 9 8 15 15 C 1.47293 * 136.54354 * 359.97438 * 14 12 9 16 16 C 1.54084 * 87.60617 * 151.36546 * 15 14 12 17 17 H 1.08998 * 115.04045 * 142.50455 * 16 15 14 18 18 C 1.53062 * 111.39401 * 273.97046 * 16 15 14 19 19 C 1.53145 * 109.21513 * 142.39764 * 18 16 15 20 20 N 1.46537 * 108.25275 * 301.59528 * 19 18 16 21 21 C 1.36937 * 119.73781 * 236.44059 * 20 19 18 22 22 H 1.08007 * 119.99945 * 28.62326 * 21 20 19 23 23 C 1.38817 * 120.00138 * 208.62333 * 21 20 19 24 24 N 1.31616 * 119.99743 * 10.20212 * 23 21 20 25 25 Si 1.86797 * 120.00002 * 190.20053 * 23 21 20 26 26 H 1.48501 * 109.47028 * 89.99943 * 25 23 21 27 27 H 1.48492 * 109.47017 * 209.99797 * 25 23 21 28 28 H 1.48502 * 109.47025 * 329.99876 * 25 23 21 29 29 C 1.45703 * 120.52546 * 56.41749 * 20 19 18 30 30 C 1.46465 * 136.54375 * 179.62295 * 14 12 9 31 31 H 1.09007 * 111.44067 * 96.38865 * 30 14 12 32 32 H 1.09004 * 109.47118 * 264.55543 * 1 2 3 33 33 H 1.08998 * 109.47450 * 144.56039 * 1 2 3 34 34 H 1.09004 * 109.47412 * 24.55405 * 1 2 3 35 35 H 1.07998 * 119.99993 * 359.97438 * 3 2 1 36 36 H 1.07996 * 119.99824 * 180.23143 * 4 3 2 37 37 H 1.07994 * 120.00431 * 179.83858 * 5 4 3 38 38 H 1.08004 * 119.99213 * 179.97438 * 6 5 4 39 39 H 1.08996 * 109.47235 * 39.08558 * 8 7 2 40 40 H 1.09001 * 109.47300 * 159.08536 * 8 7 2 41 41 H 1.09000 * 109.46700 * 175.57653 * 11 9 8 42 42 H 1.08999 * 109.46756 * 295.56859 * 11 9 8 43 43 H 1.08996 * 109.47404 * 55.57537 * 11 9 8 44 44 H 1.08994 * 113.52974 * 266.05153 * 15 14 12 45 45 H 1.08999 * 113.52633 * 36.61337 * 15 14 12 46 46 H 1.08999 * 109.51730 * 262.32347 * 18 16 15 47 47 H 1.09010 * 109.51300 * 22.42953 * 18 16 15 48 48 H 1.09007 * 109.70161 * 61.28221 * 19 18 16 49 49 H 1.08995 * 109.71030 * 181.85469 * 19 18 16 50 50 H 0.97004 * 119.99955 * 180.02562 * 24 23 21 51 51 H 1.08999 * 108.78519 * 80.89622 * 29 20 19 52 52 H 1.08993 * 108.78740 * 199.11613 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0039 5 6 4.2717 0.0000 -0.0005 6 6 3.5805 -1.1970 -0.0058 7 6 2.1980 -1.1969 -0.0058 8 6 1.4445 -2.5020 -0.0116 9 6 0.9928 -2.8365 1.4115 10 1 0.4154 -2.0044 1.8144 11 6 2.2201 -3.0794 2.2922 12 6 0.1375 -4.0769 1.3885 13 8 -0.0890 -4.6380 0.3375 14 7 -0.3767 -4.5623 2.5359 15 6 -0.3434 -4.1953 3.9620 16 6 -1.7281 -4.8573 4.0982 17 1 -1.8909 -5.3988 5.0300 18 6 -2.8516 -3.8790 3.7468 19 6 -3.9580 -4.6295 2.9997 20 7 -3.3738 -5.2311 1.7980 21 6 -3.8998 -4.9392 0.5679 22 1 -4.3837 -3.9884 0.3993 23 6 -3.8109 -5.8651 -0.4625 24 7 -3.4064 -7.0921 -0.2115 25 14 -4.2655 -5.3696 -2.2053 26 1 -3.0616 -4.8497 -2.9020 27 1 -4.7881 -6.5521 -2.9357 28 1 -5.3082 -4.3130 -2.1634 29 6 -2.2374 -6.1372 1.9016 30 6 -1.2261 -5.6895 2.9273 31 1 -0.6312 -6.5379 3.2660 32 1 -0.3633 -0.0975 1.0231 33 1 -0.3634 -0.8372 -0.5959 34 1 -0.3634 0.9348 -0.4271 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1326 0.0076 37 1 5.3516 -0.0001 -0.0001 38 1 4.1206 -2.1323 -0.0096 39 1 0.5718 -2.4148 -0.6588 40 1 2.0940 -3.2950 -0.3824 41 1 1.9019 -3.2401 3.3223 42 1 2.7547 -3.9598 1.9355 43 1 2.8779 -2.2115 2.2463 44 1 0.4395 -4.7043 4.5241 45 1 -0.3554 -3.1191 4.1347 46 1 -3.2580 -3.4474 4.6615 47 1 -2.4576 -3.0845 3.1129 48 1 -4.3687 -5.4107 3.6394 49 1 -4.7476 -3.9336 2.7165 50 1 -3.3439 -7.7391 -0.9316 51 1 -2.6019 -7.1275 2.1744 52 1 -1.7493 -6.2006 0.9292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084858531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:15 Heat of formation + Delta-G solvation = 24.620865 kcal Electronic energy + Delta-G solvation = -31547.284373 eV Core-core repulsion = 27705.387197 eV Total energy + Delta-G solvation = -3841.897177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.99808 -40.69829 -39.29795 -37.03607 -35.91562 -33.99541 -33.59214 -32.12320 -31.84578 -30.20873 -28.59579 -28.16781 -27.39818 -25.70177 -25.01310 -23.72482 -22.86444 -22.55018 -21.49478 -20.60895 -19.46996 -18.48256 -17.58400 -17.29516 -17.02330 -16.97449 -16.70964 -16.20044 -15.73525 -15.63940 -15.37426 -15.17160 -14.74371 -14.56745 -14.40550 -14.27917 -14.05322 -13.98331 -13.71388 -13.57083 -13.48020 -13.13966 -13.12679 -13.09144 -12.85315 -12.73110 -12.72172 -12.40128 -12.21467 -12.15942 -12.03252 -11.94499 -11.77495 -11.70970 -11.67187 -11.46661 -11.03595 -10.65265 -10.26913 -9.66333 -9.47978 -9.44569 -8.62518 -7.84772 -5.32873 0.45150 0.50755 1.33400 1.40577 1.44352 1.84957 2.02796 2.47048 2.86874 3.30812 3.44660 3.47449 3.73935 3.79929 3.89078 3.93435 4.01488 4.05063 4.14384 4.22533 4.27166 4.36940 4.43892 4.48796 4.52522 4.55982 4.63478 4.68092 4.71424 4.76136 4.78575 4.84763 4.85183 4.88082 4.92263 4.96064 4.96702 5.06488 5.10072 5.15035 5.20235 5.24637 5.33725 5.35267 5.45006 5.56721 5.62514 5.64703 5.72121 5.81103 5.83885 6.15933 6.41246 7.04332 7.20287 7.40177 7.96630 8.36101 9.18877 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.003844 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.939455 B = 7282.975541 C = 8471.516026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.126 4.126 6 C -0.119 4.119 7 C -0.087 4.087 8 C -0.058 4.058 9 C -0.080 4.080 10 H 0.100 0.900 11 C -0.132 4.132 12 C 0.531 3.469 13 O -0.587 6.587 14 N -0.637 5.637 15 C 0.110 3.890 16 C -0.102 4.102 17 H 0.130 0.870 18 C -0.103 4.103 19 C 0.139 3.861 20 N -0.601 5.601 21 C -0.255 4.255 22 H 0.057 0.943 23 C -0.043 4.043 24 N -0.933 5.933 25 Si 0.954 3.046 26 H -0.301 1.301 27 H -0.289 1.289 28 H -0.262 1.262 29 C 0.183 3.817 30 C 0.104 3.896 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.127 0.873 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.042 0.958 48 H 0.025 0.975 49 H 0.050 0.950 50 H 0.243 0.757 51 H -0.008 1.008 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.353 16.408 12.076 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.137 4.137 7 C -0.087 4.087 8 C -0.095 4.095 9 C -0.101 4.101 10 H 0.118 0.882 11 C -0.189 4.189 12 C 0.322 3.678 13 O -0.467 6.467 14 N -0.371 5.371 15 C -0.011 4.011 16 C -0.121 4.121 17 H 0.147 0.853 18 C -0.142 4.142 19 C 0.014 3.986 20 N -0.325 5.325 21 C -0.386 4.386 22 H 0.075 0.925 23 C -0.239 4.239 24 N -0.580 5.580 25 Si 0.783 3.217 26 H -0.229 1.229 27 H -0.215 1.215 28 H -0.186 1.186 29 C 0.057 3.943 30 C -0.001 4.001 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.145 0.855 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.061 0.939 48 H 0.043 0.957 49 H 0.068 0.932 50 H 0.052 0.948 51 H 0.009 0.991 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.323 16.071 11.222 24.880 hybrid contribution -0.579 -0.748 -1.829 2.059 sum 14.744 15.323 9.393 23.247 Atomic orbital electron populations 1.20860 0.91572 1.02690 1.02445 1.19915 0.96058 0.93127 1.00257 1.21275 0.94947 0.97349 1.00633 1.21449 0.94054 0.99050 0.99476 1.21406 1.00972 0.91982 1.00062 1.21206 0.92931 0.99239 1.00339 1.19634 0.94226 0.93490 1.01348 1.20269 0.99187 0.94612 0.95482 1.21081 0.97195 0.94175 0.97693 0.88222 1.21761 0.95360 1.02626 0.99140 1.20795 0.79142 0.86363 0.81545 1.90757 1.61305 1.62643 1.31994 1.49608 1.49964 1.30286 1.07273 1.23524 0.96788 1.02246 0.78572 1.22736 0.94891 0.97093 0.97402 0.85255 1.21713 0.95612 0.96709 1.00190 1.20969 0.94680 0.95246 0.87686 1.43671 1.32393 1.54265 1.02143 1.19358 1.32439 0.97496 0.89298 0.92485 1.25703 1.01171 0.94973 1.02013 1.70158 1.53120 1.03503 1.31189 0.85459 0.77490 0.77371 0.81357 1.22925 1.21479 1.18603 1.19729 0.87010 0.90119 0.97472 1.22511 0.91560 0.91193 0.94844 0.89798 0.90775 0.93469 0.90177 0.84420 0.83646 0.83836 0.85500 0.93018 0.91970 0.90326 0.93126 0.89996 0.86865 0.88580 0.88212 0.93883 0.95702 0.93168 0.94755 0.99053 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.00 71.23 0.64 -2.20 16 2 C -0.09 -2.18 5.88 -19.87 -0.12 -2.29 16 3 C -0.12 -2.32 9.68 22.27 0.22 -2.10 16 4 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 5 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 6 C -0.12 -2.47 8.56 22.27 0.19 -2.28 16 7 C -0.09 -2.16 4.44 -19.87 -0.09 -2.25 16 8 C -0.06 -1.78 3.64 29.85 0.11 -1.68 16 9 C -0.08 -2.31 2.56 -11.54 -0.03 -2.34 16 10 H 0.10 2.67 7.04 -2.39 -0.02 2.65 16 11 C -0.13 -2.78 8.84 71.98 0.64 -2.14 16 12 C 0.53 21.15 7.34 87.66 0.64 21.80 16 13 O -0.59 -31.33 15.17 -3.03 -0.05 -31.38 16 14 N -0.64 -22.06 3.28 -867.13 -2.85 -24.90 16 15 C 0.11 2.36 6.17 81.09 0.50 2.86 16 16 C -0.10 -2.70 4.57 -10.68 -0.05 -2.74 16 17 H 0.13 2.52 8.14 -2.39 -0.02 2.51 16 18 C -0.10 -3.07 5.69 30.66 0.17 -2.90 16 19 C 0.14 5.68 6.46 86.42 0.56 6.24 16 20 N -0.60 -31.89 3.02 -707.73 -2.14 -34.02 16 21 C -0.26 -15.32 9.49 84.03 0.80 -14.52 16 22 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 23 C -0.04 -2.68 5.03 84.86 0.43 -2.26 16 24 N -0.93 -60.79 10.92 21.65 0.24 -60.56 16 25 Si 0.95 50.57 29.57 68.60 2.03 52.60 16 26 H -0.30 -16.57 7.11 99.48 0.71 -15.86 16 27 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 28 H -0.26 -12.87 7.11 99.48 0.71 -12.17 16 29 C 0.18 9.63 4.57 85.83 0.39 10.03 16 30 C 0.10 3.91 3.98 38.52 0.15 4.06 16 31 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 32 H 0.07 1.66 7.56 -2.38 -0.02 1.64 16 33 H 0.05 1.38 6.32 -2.39 -0.02 1.37 16 34 H 0.08 1.58 8.05 -2.38 -0.02 1.56 16 35 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.13 2.39 8.04 -2.91 -0.02 2.36 16 39 H 0.05 1.93 6.23 -2.39 -0.01 1.92 16 40 H 0.06 2.03 8.01 -2.39 -0.02 2.01 16 41 H 0.08 1.35 6.55 -2.39 -0.02 1.33 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.50 6.44 -2.39 -0.02 1.48 16 44 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.10 1.65 8.05 -2.39 -0.02 1.63 16 46 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.04 1.44 7.68 -2.38 -0.02 1.42 16 48 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.05 2.05 7.89 -2.39 -0.02 2.03 16 50 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 51 H -0.01 -0.48 7.95 -2.39 -0.02 -0.50 16 52 H 0.05 3.02 5.09 -2.39 -0.01 3.00 16 Total: -1.00 -84.28 399.35 3.73 -80.55 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.90 Total: 16.06 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.60 Total: 1.65 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -4.75 Total: -119.48 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.05 Total: -31.38 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.03 Total: 52.60 kcal Total: -84.28 3.73 -80.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084858531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.167 kcal (2) G-P(sol) polarization free energy of solvation -84.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds