Wall clock time and date at job start Wed Apr 1 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 119.99724 * 2 1 4 4 C 1.38218 * 119.99596 * 179.97438 * 3 2 1 5 5 C 1.38249 * 120.00403 * 359.97383 * 4 3 2 6 6 C 1.38216 * 119.99733 * 359.74776 * 5 4 3 7 7 C 1.38212 * 120.00236 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99638 * 0.02562 * 7 2 1 9 9 C 1.52994 * 109.47327 * 84.99709 * 8 7 2 10 10 H 1.08997 * 109.47369 * 304.99707 * 9 8 7 11 11 C 1.52999 * 109.47383 * 64.99745 * 9 8 7 12 12 C 1.50705 * 109.47387 * 184.99602 * 9 8 7 13 13 O 1.21286 * 119.99524 * 325.28294 * 12 9 8 14 14 N 1.34770 * 120.00076 * 145.55033 * 12 9 8 15 15 C 1.47297 * 136.54511 * 4.84789 * 14 12 9 16 16 C 1.54079 * 87.60486 * 151.36375 * 15 14 12 17 17 H 1.08997 * 115.04091 * 142.50641 * 16 15 14 18 18 C 1.53062 * 111.39512 * 273.97120 * 16 15 14 19 19 C 1.53148 * 109.21668 * 142.39651 * 18 16 15 20 20 N 1.46538 * 108.25339 * 301.59722 * 19 18 16 21 21 C 1.36932 * 119.73596 * 236.43879 * 20 19 18 22 22 H 1.08004 * 120.00355 * 29.19875 * 21 20 19 23 23 C 1.38815 * 120.00113 * 209.20195 * 21 20 19 24 24 N 1.31617 * 119.99824 * 9.99102 * 23 21 20 25 25 Si 1.86795 * 120.00140 * 189.99974 * 23 21 20 26 26 H 1.48496 * 109.47452 * 89.99506 * 25 23 21 27 27 H 1.48500 * 109.47223 * 210.00000 * 25 23 21 28 28 H 1.48510 * 109.46993 * 329.99520 * 25 23 21 29 29 C 1.45697 * 120.52211 * 56.41439 * 20 19 18 30 30 C 1.46467 * 136.54443 * 184.47350 * 14 12 9 31 31 H 1.09005 * 111.43966 * 96.38651 * 30 14 12 32 32 H 1.08994 * 109.47219 * 270.02716 * 1 2 3 33 33 H 1.09000 * 109.46737 * 30.02528 * 1 2 3 34 34 H 1.08999 * 109.47020 * 150.02180 * 1 2 3 35 35 H 1.08003 * 120.00373 * 359.97438 * 3 2 1 36 36 H 1.08001 * 119.99545 * 179.97438 * 4 3 2 37 37 H 1.07995 * 120.00280 * 179.97438 * 5 4 3 38 38 H 1.07993 * 120.00003 * 180.27280 * 6 5 4 39 39 H 1.08996 * 109.47003 * 324.99307 * 8 7 2 40 40 H 1.09001 * 109.46749 * 204.99865 * 8 7 2 41 41 H 1.08995 * 109.47571 * 184.15098 * 11 9 8 42 42 H 1.09002 * 109.47303 * 304.15252 * 11 9 8 43 43 H 1.09002 * 109.47270 * 64.14497 * 11 9 8 44 44 H 1.08999 * 113.52930 * 266.05218 * 15 14 12 45 45 H 1.09000 * 113.52339 * 36.60791 * 15 14 12 46 46 H 1.09002 * 109.51914 * 262.32445 * 18 16 15 47 47 H 1.09000 * 109.51109 * 22.43170 * 18 16 15 48 48 H 1.09005 * 109.70148 * 61.28108 * 19 18 16 49 49 H 1.08996 * 109.70911 * 181.85646 * 19 18 16 50 50 H 0.97005 * 120.00221 * 180.02562 * 24 23 21 51 51 H 1.09000 * 108.78587 * 80.90580 * 29 20 19 52 52 H 1.08998 * 108.78544 * 199.22286 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 0.0001 0.0016 6 6 3.5807 -1.1969 0.0074 7 6 2.1982 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0812 -2.8811 -1.4364 10 1 0.5317 -2.0621 -1.9004 11 6 2.3601 -3.1521 -2.2314 12 6 0.2233 -4.1201 -1.4275 13 8 0.4128 -4.9829 -0.5964 14 7 -0.7508 -4.2719 -2.3464 15 6 -1.2259 -3.5384 -3.5321 16 6 -1.7037 -4.8901 -4.0968 17 1 -2.6445 -4.8540 -4.6460 18 6 -0.5792 -5.6124 -4.8427 19 6 -0.6789 -7.1163 -4.5711 20 7 -0.5869 -7.3285 -3.1241 21 6 0.3820 -8.1538 -2.6189 22 1 1.3197 -8.2694 -3.1422 23 6 0.1589 -8.8421 -1.4342 24 7 -1.0438 -8.8599 -0.8999 25 14 1.5657 -9.7428 -0.5982 26 1 2.2452 -8.8262 0.3522 27 1 1.0331 -10.9158 0.1404 28 1 2.5374 -10.2027 -1.6229 29 6 -1.5177 -6.6677 -2.2186 30 6 -1.8113 -5.2442 -2.6210 31 1 -2.7647 -4.9230 -2.2014 32 1 -0.3633 0.0005 1.0276 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1327 0.0001 37 1 5.3517 0.0001 0.0016 38 1 4.1206 -2.1321 0.0127 39 1 0.5338 -2.3956 0.5897 40 1 2.0694 -3.2822 0.4353 41 1 2.1057 -3.3500 -3.2726 42 1 3.0136 -2.2815 -2.1763 43 1 2.8723 -4.0179 -1.8117 44 1 -2.0387 -2.8445 -3.3178 45 1 -0.4235 -3.0824 -4.1120 46 1 -0.6752 -5.4285 -5.9128 47 1 0.3851 -5.2421 -4.4947 48 1 -1.6336 -7.4935 -4.9378 49 1 0.1381 -7.6354 -5.0721 50 1 -1.1996 -9.3405 -0.0718 51 1 -2.4514 -7.2300 -2.2034 52 1 -1.0917 -6.6686 -1.2153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084858532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:20 Heat of formation + Delta-G solvation = 44.069013 kcal Electronic energy + Delta-G solvation = -31404.898127 eV Core-core repulsion = 27563.844285 eV Total energy + Delta-G solvation = -3841.053842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.60155 -39.79705 -37.88905 -35.14278 -34.75733 -32.80454 -32.08827 -30.96277 -30.09312 -28.79413 -27.35323 -26.86477 -26.53175 -23.85060 -23.63019 -22.41359 -21.97577 -21.01661 -20.49312 -19.22971 -17.69845 -17.12299 -16.37106 -15.94928 -15.68315 -15.64915 -15.33977 -14.95473 -14.30970 -14.08161 -13.97365 -13.65078 -13.46261 -13.39265 -13.22845 -13.19036 -12.77176 -12.66608 -12.48568 -12.30857 -12.21019 -12.12173 -11.95613 -11.73697 -11.38410 -11.23678 -11.12689 -10.96026 -10.91185 -10.75998 -10.65443 -10.58923 -10.41547 -10.14322 -9.81879 -9.75756 -9.47037 -8.88842 -8.83095 -8.61761 -8.25052 -8.03275 -6.48549 -5.60478 -3.06897 1.23821 1.28219 3.27447 3.33783 3.50366 3.55797 3.57928 3.66778 4.57767 4.63854 4.68568 4.72880 4.80755 4.88355 4.94060 5.04011 5.14121 5.20987 5.26340 5.38974 5.40960 5.48501 5.49011 5.55653 5.56440 5.60143 5.66026 5.72282 5.76807 5.79750 5.84632 5.88918 5.92876 5.98116 6.06021 6.17911 6.19464 6.27177 6.32525 6.38412 6.38879 6.41666 6.44505 6.57933 6.62833 6.64902 6.83606 6.92163 7.04650 7.55626 7.83627 7.98768 8.42913 8.64886 8.86462 9.41751 10.04627 10.53952 11.47435 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012726 B = 0.003533 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.700956 B = 7924.147878 C = 9096.955388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.125 4.125 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.072 4.072 8 C -0.067 4.067 9 C -0.093 4.093 10 H 0.081 0.919 11 C -0.139 4.139 12 C 0.542 3.458 13 O -0.512 6.512 14 N -0.632 5.632 15 C 0.095 3.905 16 C -0.113 4.113 17 H 0.090 0.910 18 C -0.115 4.115 19 C 0.148 3.852 20 N -0.583 5.583 21 C -0.250 4.250 22 H 0.059 0.941 23 C 0.013 3.987 24 N -0.905 5.905 25 Si 0.901 3.099 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.169 3.831 30 C 0.118 3.882 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.018 0.982 49 H 0.055 0.945 50 H 0.251 0.749 51 H 0.029 0.971 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 21.267 -3.349 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.128 4.128 7 C -0.072 4.072 8 C -0.105 4.105 9 C -0.115 4.115 10 H 0.099 0.901 11 C -0.196 4.196 12 C 0.330 3.670 13 O -0.386 6.386 14 N -0.369 5.369 15 C -0.029 4.029 16 C -0.132 4.132 17 H 0.108 0.892 18 C -0.154 4.154 19 C 0.022 3.978 20 N -0.306 5.306 21 C -0.380 4.380 22 H 0.077 0.923 23 C -0.185 4.185 24 N -0.550 5.550 25 Si 0.731 3.269 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.207 1.207 29 C 0.043 3.957 30 C 0.014 3.986 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.036 0.964 49 H 0.073 0.927 50 H 0.061 0.939 51 H 0.046 0.954 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.914 20.711 -2.539 21.069 hybrid contribution 0.664 -0.187 0.506 0.855 sum 3.578 20.525 -2.033 20.933 Atomic orbital electron populations 1.20880 0.91362 1.02902 1.02492 1.19800 0.96012 0.92601 0.99845 1.20990 0.94261 0.97285 1.01413 1.21081 0.94295 0.97921 1.00977 1.21112 0.99749 0.92533 1.00989 1.21129 0.93653 0.98268 0.99708 1.19765 0.93688 0.94408 0.99363 1.20472 1.00608 0.93930 0.95452 1.21148 0.97142 0.96036 0.97146 0.90083 1.21733 0.95873 1.02421 0.99615 1.19879 0.79614 0.87697 0.79791 1.90800 1.67986 1.42469 1.37320 1.49484 1.31519 1.27499 1.28390 1.23300 0.97875 0.95839 0.85875 1.22682 0.99574 0.94792 0.96144 0.89179 1.21840 0.97021 0.99226 0.97353 1.20724 0.98462 0.91709 0.86939 1.43409 1.36673 1.51555 0.98934 1.19047 0.93641 1.18516 1.06770 0.92313 1.25015 0.95876 0.97958 0.99665 1.69978 1.19225 1.45200 1.20557 0.86316 0.81964 0.78927 0.79666 1.21340 1.21859 1.20691 1.20144 0.93960 0.84850 0.96755 1.22495 0.88897 0.94753 0.92471 0.91318 0.91110 0.91654 0.91074 0.86340 0.86412 0.86276 0.85870 0.90614 0.89602 0.92437 0.91696 0.91598 0.90743 0.91261 0.92825 0.92173 0.96365 0.92695 0.93883 0.95352 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.22 36.01 0.33 -0.80 16 2 C -0.08 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 4 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 5 C -0.13 -1.25 10.05 -39.59 -0.40 -1.65 16 6 C -0.11 -1.24 8.27 -39.58 -0.33 -1.57 16 7 C -0.07 -0.87 4.56 -104.63 -0.48 -1.34 16 8 C -0.07 -0.93 3.70 -27.89 -0.10 -1.03 16 9 C -0.09 -1.35 2.36 -91.77 -0.22 -1.56 16 10 H 0.08 1.02 6.79 -51.93 -0.35 0.67 16 11 C -0.14 -1.92 8.94 37.16 0.33 -1.59 16 12 C 0.54 10.45 7.03 -10.99 -0.08 10.37 16 13 O -0.51 -12.64 15.54 5.55 0.09 -12.56 16 14 N -0.63 -11.29 3.34 -188.03 -0.63 -11.91 16 15 C 0.09 1.25 7.59 -11.54 -0.09 1.16 16 16 C -0.11 -1.71 4.57 -90.46 -0.41 -2.13 16 17 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 18 C -0.11 -1.92 5.69 -26.62 -0.15 -2.07 16 19 C 0.15 3.10 6.46 -3.94 -0.03 3.08 16 20 N -0.58 -15.03 3.02 -175.06 -0.53 -15.56 16 21 C -0.25 -7.23 9.48 -15.06 -0.14 -7.37 16 22 H 0.06 1.69 7.84 -52.48 -0.41 1.28 16 23 C 0.01 0.40 5.03 -17.43 -0.09 0.31 16 24 N -0.91 -27.70 10.95 55.49 0.61 -27.09 16 25 Si 0.90 23.50 29.56 -169.99 -5.03 18.48 16 26 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.17 4.23 4.54 -5.57 -0.03 4.20 16 30 C 0.12 2.25 3.99 -77.97 -0.31 1.94 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.72 5.49 -51.93 -0.29 0.44 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.08 1.06 6.99 -51.93 -0.36 0.70 16 40 H 0.09 1.33 7.92 -51.93 -0.41 0.92 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.78 6.28 -51.93 -0.33 0.45 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.05 1.14 7.89 -51.93 -0.41 0.73 16 50 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.03 0.77 7.95 -51.93 -0.41 0.36 16 52 H 0.10 2.96 5.10 -51.93 -0.26 2.69 16 LS Contribution 402.59 15.07 6.07 6.07 Total: -1.00 -34.43 402.59 -11.68 -46.11 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.68 Total: 1.16 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -3.58 Total: -4.69 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.55 Total: -54.56 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.03 Total: 18.48 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.43 -11.68 -46.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084858532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.179 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds