Wall clock time and date at job start Wed Apr 1 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47348 * 2 1 4 4 C 1.38374 * 119.86012 * 265.00666 * 3 2 1 5 5 C 1.37932 * 120.14812 * 179.97438 * 4 3 2 6 6 C 1.39597 * 119.85299 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.14477 * 180.02562 * 6 5 4 8 8 O 1.21554 * 120.00073 * 186.73410 * 7 6 5 9 9 N 1.34780 * 120.00204 * 6.74234 * 7 6 5 10 10 C 1.47295 * 136.53954 * 5.59905 * 9 7 6 11 11 C 1.54083 * 87.60349 * 151.36820 * 10 9 7 12 12 H 1.09007 * 115.03854 * 142.50197 * 11 10 9 13 13 C 1.53059 * 111.39216 * 273.96831 * 11 10 9 14 14 C 1.53144 * 109.21315 * 142.39989 * 13 11 10 15 15 N 1.46535 * 108.25391 * 301.58918 * 14 13 11 16 16 C 1.36936 * 119.74188 * 236.39866 * 15 14 13 17 17 H 1.07999 * 119.99928 * 25.65459 * 16 15 14 18 18 C 1.38813 * 119.99828 * 205.65190 * 16 15 14 19 19 N 1.31622 * 120.00483 * 15.72946 * 18 16 15 20 20 Si 1.86807 * 119.99741 * 195.72445 * 18 16 15 21 21 H 1.48493 * 109.47146 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46921 * 120.00700 * 20 18 16 23 23 H 1.48499 * 109.46864 * 240.00246 * 20 18 16 24 24 C 1.45708 * 120.52111 * 56.42013 * 15 14 13 25 25 C 1.46458 * 136.54585 * 185.22792 * 9 7 6 26 26 H 1.09010 * 111.44241 * 96.38067 * 25 9 7 27 27 C 1.39554 * 119.70812 * 0.02562 * 6 5 4 28 28 C 1.37976 * 119.85562 * 359.73956 * 27 6 5 29 29 C 1.50703 * 119.92961 * 180.27370 * 28 27 6 30 30 C 1.53000 * 109.47217 * 265.23615 * 29 28 27 31 31 H 1.08996 * 109.46655 * 299.99521 * 1 2 3 32 32 H 1.09001 * 109.46895 * 59.99362 * 1 2 3 33 33 H 1.08993 * 109.47259 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47043 * 240.00508 * 2 1 3 35 35 H 1.08992 * 109.47405 * 120.00915 * 2 1 3 36 36 H 1.08005 * 119.92601 * 359.97438 * 4 3 2 37 37 H 1.08006 * 120.07304 * 179.97438 * 5 4 3 38 38 H 1.09001 * 113.52883 * 266.05160 * 10 9 7 39 39 H 1.08996 * 113.53117 * 36.61394 * 10 9 7 40 40 H 1.08995 * 109.52051 * 262.32199 * 13 11 10 41 41 H 1.08999 * 109.51449 * 22.42809 * 13 11 10 42 42 H 1.09002 * 109.70504 * 61.28190 * 14 13 11 43 43 H 1.09004 * 109.71134 * 181.85911 * 14 13 11 44 44 H 0.96993 * 120.00178 * 179.97438 * 19 18 16 45 45 H 1.09003 * 108.78566 * 80.89508 * 24 15 14 46 46 H 1.08998 * 108.78788 * 199.22644 * 24 15 14 47 47 H 1.08008 * 120.06853 * 180.02562 * 27 6 5 48 48 H 1.08999 * 109.46912 * 25.23265 * 29 28 27 49 49 H 1.08999 * 109.47382 * 145.23623 * 29 28 27 50 50 H 1.09004 * 109.47198 * 179.97438 * 30 29 28 51 51 H 1.08997 * 109.47177 * 300.00384 * 30 29 28 52 52 H 1.09001 * 109.47293 * 60.00134 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3606 2.0355 -1.1955 5 6 2.8205 3.3359 -1.2024 6 6 2.9541 4.0321 0.0001 7 6 3.4458 5.4264 0.0001 8 8 3.6777 5.9891 1.0523 9 7 3.6369 6.0736 -1.1666 10 6 3.3905 5.8014 -2.5930 11 6 3.2480 7.3227 -2.7921 12 1 3.6608 7.7065 -3.7252 13 6 1.8187 7.7913 -2.5088 14 6 1.8641 9.1537 -1.8108 15 7 2.6376 9.0105 -0.5745 16 6 2.0730 9.3568 0.6240 17 1 0.9998 9.3324 0.7425 18 6 2.8802 9.7391 1.6867 19 7 4.1365 10.0687 1.4736 20 14 2.1832 9.7861 3.4192 21 1 0.7571 9.3731 3.3904 22 1 2.9501 8.8563 4.2866 23 1 2.2885 11.1660 3.9578 24 6 4.0029 8.5028 -0.6105 25 6 4.1773 7.3679 -1.5883 26 1 5.2225 7.2851 -1.8868 27 6 2.6214 3.4063 1.2023 28 6 2.1579 2.1067 1.1948 29 6 1.7923 1.4314 2.4915 30 6 2.9871 0.6219 2.9995 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 2.2564 1.4959 -2.1252 37 1 3.0766 3.8144 -2.1362 38 1 4.2500 5.3736 -3.1092 39 1 2.4693 5.2490 -2.7779 40 1 1.2721 7.8813 -3.4475 41 1 1.3193 7.0678 -1.8646 42 1 2.3437 9.8845 -2.4620 43 1 0.8510 9.4801 -1.5755 44 1 4.7004 10.3362 2.2161 45 1 4.6725 9.3160 -0.8906 46 1 4.2737 8.1531 0.3857 47 1 2.7221 3.9397 2.1360 48 1 1.5237 2.1858 3.2309 49 1 0.9452 0.7651 2.3280 50 1 2.7228 0.1338 3.9377 51 1 3.2557 -0.1324 2.2601 52 1 3.8342 1.2881 3.1632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084875237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:47 Heat of formation + Delta-G solvation = 50.424883 kcal Electronic energy + Delta-G solvation = -31228.859768 eV Core-core repulsion = 27388.081538 eV Total energy + Delta-G solvation = -3840.778230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.75189 -39.68670 -37.47625 -35.24240 -34.63882 -33.54459 -32.10352 -30.17924 -30.02049 -29.79838 -28.26227 -26.96375 -24.80348 -23.98713 -23.79720 -22.60370 -21.64301 -21.59615 -20.68619 -19.57249 -17.83928 -17.08289 -16.33348 -15.99974 -15.76743 -15.68760 -15.13185 -14.51752 -14.25943 -14.03907 -13.83194 -13.75081 -13.64182 -13.49334 -13.44934 -13.23178 -13.12161 -12.71886 -12.47208 -12.45706 -12.37181 -11.97386 -11.81585 -11.60839 -11.47541 -11.38908 -11.24176 -11.07062 -10.85163 -10.72820 -10.62203 -10.52974 -10.43113 -10.12564 -9.82108 -9.72949 -9.50168 -8.93712 -8.80799 -8.59063 -8.25218 -8.06451 -6.53266 -5.60489 -3.01637 0.99488 1.39027 3.20705 3.29254 3.51464 3.59850 3.60441 4.06322 4.53174 4.57891 4.64848 4.69866 4.71772 4.82313 4.88073 5.10693 5.12653 5.16550 5.21101 5.25911 5.34767 5.44158 5.46456 5.48622 5.52174 5.54635 5.61219 5.64251 5.65441 5.72977 5.78675 5.82769 5.91215 5.94203 5.96104 6.06095 6.12289 6.16887 6.19521 6.33064 6.38535 6.42611 6.50607 6.55135 6.59656 6.66367 6.82658 6.95405 7.04158 7.53658 7.81500 7.99260 8.35919 8.63016 8.81135 9.41169 10.05781 10.53242 11.48058 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.003808 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.142423 B = 7350.332876 C = 8845.149223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.065 4.065 4 C -0.127 4.127 5 C -0.101 4.101 6 C -0.117 4.117 7 C 0.579 3.421 8 O -0.508 6.508 9 N -0.627 5.627 10 C 0.088 3.912 11 C -0.112 4.112 12 H 0.092 0.908 13 C -0.116 4.116 14 C 0.149 3.851 15 N -0.584 5.584 16 C -0.250 4.250 17 H 0.061 0.939 18 C 0.012 3.988 19 N -0.904 5.904 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.293 1.293 24 C 0.167 3.833 25 C 0.121 3.879 26 H 0.072 0.928 27 C -0.058 4.058 28 C -0.089 4.089 29 C -0.088 4.088 30 C -0.148 4.148 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.251 0.749 45 H 0.030 0.970 46 H 0.101 0.899 47 H 0.134 0.866 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.057 0.943 51 H 0.055 0.945 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -20.531 -8.805 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.065 4.065 4 C -0.145 4.145 5 C -0.119 4.119 6 C -0.120 4.120 7 C 0.368 3.632 8 O -0.383 6.383 9 N -0.363 5.363 10 C -0.035 4.035 11 C -0.131 4.131 12 H 0.111 0.889 13 C -0.155 4.155 14 C 0.022 3.978 15 N -0.306 5.306 16 C -0.379 4.379 17 H 0.079 0.921 18 C -0.186 4.186 19 N -0.549 5.549 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.220 1.220 24 C 0.041 3.959 25 C 0.017 3.983 26 H 0.090 0.910 27 C -0.077 4.077 28 C -0.089 4.089 29 C -0.125 4.125 30 C -0.205 4.205 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.119 0.881 47 H 0.152 0.848 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.138 -20.277 -7.862 21.973 hybrid contribution -0.136 -0.059 0.758 0.772 sum -3.275 -20.336 -7.104 21.789 Atomic orbital electron populations 1.21766 0.94660 1.01611 1.02490 1.20623 0.96274 0.92757 1.02923 1.19864 0.98045 0.95968 0.92669 1.20912 1.01165 0.94996 0.97406 1.21749 0.97758 0.94506 0.97925 1.20080 1.03271 0.94477 0.94167 1.17631 0.78606 0.84714 0.82221 1.90870 1.50674 1.67113 1.29685 1.49259 1.62774 1.19816 1.04427 1.23477 1.00454 0.97866 0.81719 1.22710 0.98053 0.94201 0.98146 0.88946 1.21848 0.93342 1.00829 0.99519 1.20714 0.95958 0.92462 0.88669 1.43454 1.12170 1.73272 1.01733 1.19106 0.91392 1.38999 0.88451 0.92091 1.24891 0.96280 0.98828 0.98605 1.70022 1.06553 1.48359 1.29923 0.86268 0.78365 0.76791 0.85565 1.20535 1.21507 1.22021 1.20155 0.86370 0.90423 0.98948 1.22507 0.96081 0.85709 0.94023 0.91030 1.21191 0.94919 0.93574 0.98024 1.19652 1.00551 0.93922 0.94820 1.20597 0.98619 0.99377 0.93892 1.21769 0.98145 0.99962 1.00606 0.92294 0.92467 0.92435 0.91147 0.90571 0.85925 0.84807 0.90365 0.90605 0.92705 0.92114 0.96303 0.92646 0.93941 0.95225 0.88057 0.84778 0.90814 0.90661 0.92408 0.92591 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.72 37.16 0.36 -0.77 16 2 C -0.09 -0.73 5.37 -27.88 -0.15 -0.88 16 3 C -0.07 -0.73 5.14 -104.53 -0.54 -1.27 16 4 C -0.13 -1.43 9.66 -39.64 -0.38 -1.82 16 5 C -0.10 -1.36 9.16 -39.19 -0.36 -1.72 16 6 C -0.12 -1.98 5.87 -104.97 -0.62 -2.60 16 7 C 0.58 12.14 7.96 -12.33 -0.10 12.04 16 8 O -0.51 -13.22 15.53 5.32 0.08 -13.14 16 9 N -0.63 -11.69 3.31 -189.17 -0.63 -12.32 16 10 C 0.09 1.18 5.53 -11.53 -0.06 1.12 16 11 C -0.11 -1.71 4.57 -90.46 -0.41 -2.13 16 12 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 13 C -0.12 -1.96 5.69 -26.63 -0.15 -2.12 16 14 C 0.15 3.13 6.46 -3.95 -0.03 3.11 16 15 N -0.58 -15.23 3.02 -175.05 -0.53 -15.76 16 16 C -0.25 -7.32 9.51 -15.06 -0.14 -7.47 16 17 H 0.06 1.78 7.84 -52.49 -0.41 1.37 16 18 C 0.01 0.37 4.91 -17.43 -0.09 0.29 16 19 N -0.90 -27.90 11.05 55.49 0.61 -27.29 16 20 Si 0.90 23.87 29.58 -169.99 -5.03 18.84 16 21 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 23 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 24 C 0.17 4.23 4.56 -5.56 -0.03 4.20 16 25 C 0.12 2.34 3.99 -77.97 -0.31 2.03 16 26 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 27 C -0.06 -0.93 9.22 -39.19 -0.36 -1.29 16 28 C -0.09 -1.13 5.13 -104.68 -0.54 -1.67 16 29 C -0.09 -0.90 5.38 -27.88 -0.15 -1.05 16 30 C -0.15 -1.35 9.72 37.16 0.36 -0.99 16 31 H 0.06 0.48 6.76 -51.93 -0.35 0.13 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 35 H 0.08 0.58 5.61 -51.93 -0.29 0.29 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.13 1.58 4.22 -52.48 -0.22 1.35 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.91 6.62 -51.93 -0.34 0.57 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 1.16 7.87 -51.93 -0.41 0.75 16 44 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.03 0.80 7.99 -51.93 -0.41 0.39 16 46 H 0.10 3.02 5.00 -51.93 -0.26 2.76 16 47 H 0.13 2.32 7.67 -52.48 -0.40 1.92 16 48 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 49 H 0.07 0.66 5.57 -51.93 -0.29 0.37 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.06 0.47 6.79 -51.93 -0.35 0.12 16 52 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -35.14 396.75 -11.54 -46.68 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.34 Total: -0.03 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -3.69 Total: -2.97 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.54 Total: -55.37 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.03 Total: 18.84 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.14 -11.54 -46.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084875237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.108 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds