Wall clock time and date at job start Wed Apr 1 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47348 * 2 1 4 4 C 1.38374 * 119.86012 * 265.00666 * 3 2 1 5 5 C 1.37932 * 120.14812 * 179.97438 * 4 3 2 6 6 C 1.39597 * 119.85299 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.14477 * 180.02562 * 6 5 4 8 8 O 1.21554 * 120.00073 * 186.73410 * 7 6 5 9 9 N 1.34780 * 120.00204 * 6.74234 * 7 6 5 10 10 C 1.47295 * 136.53954 * 5.59905 * 9 7 6 11 11 C 1.54083 * 87.60349 * 151.36820 * 10 9 7 12 12 H 1.09007 * 115.03854 * 142.50197 * 11 10 9 13 13 C 1.53059 * 111.39216 * 273.96831 * 11 10 9 14 14 C 1.53144 * 109.21315 * 142.39989 * 13 11 10 15 15 N 1.46535 * 108.25391 * 301.58918 * 14 13 11 16 16 C 1.36936 * 119.74188 * 236.39866 * 15 14 13 17 17 H 1.07999 * 119.99928 * 25.65459 * 16 15 14 18 18 C 1.38813 * 119.99828 * 205.65190 * 16 15 14 19 19 N 1.31622 * 120.00483 * 15.72946 * 18 16 15 20 20 Si 1.86807 * 119.99741 * 195.72445 * 18 16 15 21 21 H 1.48493 * 109.47146 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46921 * 120.00700 * 20 18 16 23 23 H 1.48499 * 109.46864 * 240.00246 * 20 18 16 24 24 C 1.45708 * 120.52111 * 56.42013 * 15 14 13 25 25 C 1.46458 * 136.54585 * 185.22792 * 9 7 6 26 26 H 1.09010 * 111.44241 * 96.38067 * 25 9 7 27 27 C 1.39554 * 119.70812 * 0.02562 * 6 5 4 28 28 C 1.37976 * 119.85562 * 359.73956 * 27 6 5 29 29 C 1.50703 * 119.92961 * 180.27370 * 28 27 6 30 30 C 1.53000 * 109.47217 * 265.23615 * 29 28 27 31 31 H 1.08996 * 109.46655 * 299.99521 * 1 2 3 32 32 H 1.09001 * 109.46895 * 59.99362 * 1 2 3 33 33 H 1.08993 * 109.47259 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47043 * 240.00508 * 2 1 3 35 35 H 1.08992 * 109.47405 * 120.00915 * 2 1 3 36 36 H 1.08005 * 119.92601 * 359.97438 * 4 3 2 37 37 H 1.08006 * 120.07304 * 179.97438 * 5 4 3 38 38 H 1.09001 * 113.52883 * 266.05160 * 10 9 7 39 39 H 1.08996 * 113.53117 * 36.61394 * 10 9 7 40 40 H 1.08995 * 109.52051 * 262.32199 * 13 11 10 41 41 H 1.08999 * 109.51449 * 22.42809 * 13 11 10 42 42 H 1.09002 * 109.70504 * 61.28190 * 14 13 11 43 43 H 1.09004 * 109.71134 * 181.85911 * 14 13 11 44 44 H 0.96993 * 120.00178 * 179.97438 * 19 18 16 45 45 H 1.09003 * 108.78566 * 80.89508 * 24 15 14 46 46 H 1.08998 * 108.78788 * 199.22644 * 24 15 14 47 47 H 1.08008 * 120.06853 * 180.02562 * 27 6 5 48 48 H 1.08999 * 109.46912 * 25.23265 * 29 28 27 49 49 H 1.08999 * 109.47382 * 145.23623 * 29 28 27 50 50 H 1.09004 * 109.47198 * 179.97438 * 30 29 28 51 51 H 1.08997 * 109.47177 * 300.00384 * 30 29 28 52 52 H 1.09001 * 109.47293 * 60.00134 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3606 2.0355 -1.1955 5 6 2.8205 3.3359 -1.2024 6 6 2.9541 4.0321 0.0001 7 6 3.4458 5.4264 0.0001 8 8 3.6777 5.9891 1.0523 9 7 3.6369 6.0736 -1.1666 10 6 3.3905 5.8014 -2.5930 11 6 3.2480 7.3227 -2.7921 12 1 3.6608 7.7065 -3.7252 13 6 1.8187 7.7913 -2.5088 14 6 1.8641 9.1537 -1.8108 15 7 2.6376 9.0105 -0.5745 16 6 2.0730 9.3568 0.6240 17 1 0.9998 9.3324 0.7425 18 6 2.8802 9.7391 1.6867 19 7 4.1365 10.0687 1.4736 20 14 2.1832 9.7861 3.4192 21 1 0.7571 9.3731 3.3904 22 1 2.9501 8.8563 4.2866 23 1 2.2885 11.1660 3.9578 24 6 4.0029 8.5028 -0.6105 25 6 4.1773 7.3679 -1.5883 26 1 5.2225 7.2851 -1.8868 27 6 2.6214 3.4063 1.2023 28 6 2.1579 2.1067 1.1948 29 6 1.7923 1.4314 2.4915 30 6 2.9871 0.6219 2.9995 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 2.2564 1.4959 -2.1252 37 1 3.0766 3.8144 -2.1362 38 1 4.2500 5.3736 -3.1092 39 1 2.4693 5.2490 -2.7779 40 1 1.2721 7.8813 -3.4475 41 1 1.3193 7.0678 -1.8646 42 1 2.3437 9.8845 -2.4620 43 1 0.8510 9.4801 -1.5755 44 1 4.7004 10.3362 2.2161 45 1 4.6725 9.3160 -0.8906 46 1 4.2737 8.1531 0.3857 47 1 2.7221 3.9397 2.1360 48 1 1.5237 2.1858 3.2309 49 1 0.9452 0.7651 2.3280 50 1 2.7228 0.1338 3.9377 51 1 3.2557 -0.1324 2.2601 52 1 3.8342 1.2881 3.1632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084875237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:46 Heat of formation + Delta-G solvation = 28.950032 kcal Electronic energy + Delta-G solvation = -31229.790988 eV Core-core repulsion = 27388.081538 eV Total energy + Delta-G solvation = -3841.709450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.13348 -40.75841 -39.00872 -37.11602 -35.65197 -34.35059 -33.99912 -31.97596 -31.30817 -30.81706 -29.51878 -28.65354 -25.92166 -25.53067 -25.07701 -23.92822 -22.98732 -22.49727 -22.06981 -20.83998 -19.57771 -18.62837 -17.62641 -17.44238 -17.35376 -16.70330 -16.54289 -16.13058 -15.72713 -15.52368 -15.18506 -14.92988 -14.76999 -14.74051 -14.61757 -14.46692 -14.26541 -14.06119 -14.00408 -13.61627 -13.41599 -13.22459 -13.18036 -12.89137 -12.74758 -12.70771 -12.50364 -12.36654 -12.22045 -12.15574 -12.03810 -11.99949 -11.75272 -11.72415 -11.51972 -11.46066 -11.00791 -10.71179 -10.39486 -9.87370 -9.67140 -9.44677 -8.68644 -7.88135 -5.30725 -0.11438 0.37444 1.29963 1.37756 1.42978 1.91683 1.93467 2.45377 2.85229 3.26933 3.39637 3.46117 3.69845 3.71997 3.84531 3.92443 3.94925 4.08788 4.15437 4.24270 4.34051 4.43298 4.45412 4.48216 4.52135 4.54021 4.55602 4.59498 4.67140 4.73751 4.74362 4.76476 4.87372 4.94667 4.99143 5.02404 5.05016 5.08568 5.09807 5.11488 5.21513 5.30624 5.30921 5.36625 5.38952 5.49080 5.50666 5.53941 5.65325 5.70643 5.79386 5.97673 6.37612 6.92592 7.17309 7.29494 7.94907 8.32800 9.16428 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.003808 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.142423 B = 7350.332876 C = 8845.149223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.056 4.056 4 C -0.118 4.118 5 C -0.094 4.094 6 C -0.146 4.146 7 C 0.565 3.435 8 O -0.586 6.586 9 N -0.634 5.634 10 C 0.101 3.899 11 C -0.098 4.098 12 H 0.138 0.862 13 C -0.105 4.105 14 C 0.139 3.861 15 N -0.602 5.602 16 C -0.254 4.254 17 H 0.056 0.944 18 C -0.043 4.043 19 N -0.931 5.931 20 Si 0.951 3.049 21 H -0.270 1.270 22 H -0.305 1.305 23 H -0.280 1.280 24 C 0.181 3.819 25 C 0.105 3.895 26 H 0.092 0.908 27 C -0.087 4.087 28 C -0.091 4.091 29 C -0.088 4.088 30 C -0.144 4.144 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.048 0.952 44 H 0.244 0.756 45 H -0.003 1.003 46 H 0.046 0.954 47 H 0.097 0.903 48 H 0.058 0.942 49 H 0.098 0.902 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -24.519 -13.035 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.135 4.135 5 C -0.112 4.112 6 C -0.149 4.149 7 C 0.357 3.643 8 O -0.468 6.468 9 N -0.368 5.368 10 C -0.020 4.020 11 C -0.117 4.117 12 H 0.156 0.844 13 C -0.144 4.144 14 C 0.014 3.986 15 N -0.325 5.325 16 C -0.385 4.385 17 H 0.074 0.926 18 C -0.238 4.238 19 N -0.578 5.578 20 Si 0.781 3.219 21 H -0.194 1.194 22 H -0.233 1.233 23 H -0.206 1.206 24 C 0.054 3.946 25 C 0.000 4.000 26 H 0.110 0.890 27 C -0.106 4.106 28 C -0.091 4.091 29 C -0.125 4.125 30 C -0.201 4.201 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.183 0.817 37 H 0.173 0.827 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.014 0.986 46 H 0.064 0.936 47 H 0.115 0.885 48 H 0.076 0.924 49 H 0.116 0.884 50 H 0.093 0.907 51 H 0.089 0.911 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.749 -24.275 -12.183 27.572 hybrid contribution 0.306 1.155 2.031 2.356 sum -4.443 -23.120 -10.152 25.638 Atomic orbital electron populations 1.21770 0.94032 1.02759 1.01942 1.20725 0.96610 0.90456 1.04567 1.20324 0.96046 0.97426 0.91828 1.21383 0.99079 0.94040 0.99022 1.21934 0.97169 0.95245 0.96896 1.19901 1.06074 0.92775 0.96102 1.18431 0.77762 0.86177 0.81911 1.90819 1.54251 1.69155 1.32532 1.49437 1.61665 1.19360 1.06295 1.23755 1.03464 0.96841 0.77920 1.22754 0.95637 0.95955 0.97375 0.84427 1.21726 0.95133 0.96969 1.00558 1.20975 0.94833 0.95671 0.87120 1.43698 1.12662 1.73583 1.02566 1.19369 0.91298 1.37567 0.90271 0.92636 1.25561 0.96775 0.99714 1.01749 1.70172 1.07524 1.49979 1.30123 0.85436 0.77942 0.76803 0.81723 1.19418 1.23250 1.20643 1.19756 0.85422 0.91467 0.97922 1.22580 0.98754 0.84151 0.94475 0.89007 1.21105 0.97439 0.95305 0.96756 1.19870 0.99774 0.92570 0.96860 1.20660 0.99898 0.99367 0.92592 1.21749 0.96798 0.99666 1.01899 0.93351 0.92593 0.90472 0.88807 0.89733 0.81731 0.82655 0.85953 0.88163 0.87855 0.94481 0.95218 0.93294 0.94723 0.98569 0.93566 0.88489 0.92364 0.88380 0.90689 0.91143 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.72 71.98 0.70 -0.94 16 2 C -0.09 -1.02 5.37 29.85 0.16 -0.86 16 3 C -0.06 -1.07 5.14 -19.81 -0.10 -1.17 16 4 C -0.12 -2.14 9.66 22.23 0.21 -1.93 16 5 C -0.09 -2.27 9.16 22.53 0.21 -2.06 16 6 C -0.15 -5.07 5.87 -20.09 -0.12 -5.19 16 7 C 0.57 25.16 7.96 86.78 0.69 25.86 16 8 O -0.59 -33.89 15.53 -3.89 -0.06 -33.95 16 9 N -0.63 -23.50 3.31 -870.67 -2.89 -26.38 16 10 C 0.10 2.24 5.53 81.09 0.45 2.69 16 11 C -0.10 -2.63 4.57 -10.69 -0.05 -2.68 16 12 H 0.14 2.59 8.14 -2.38 -0.02 2.57 16 13 C -0.10 -3.24 5.69 30.66 0.17 -3.07 16 14 C 0.14 5.81 6.46 86.42 0.56 6.36 16 15 N -0.60 -32.77 3.02 -707.75 -2.14 -34.91 16 16 C -0.25 -15.74 9.51 84.03 0.80 -14.94 16 17 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 18 C -0.04 -2.72 4.91 84.86 0.42 -2.30 16 19 N -0.93 -61.66 11.05 21.65 0.24 -61.42 16 20 Si 0.95 52.16 29.58 68.60 2.03 54.18 16 21 H -0.27 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.30 -17.37 7.11 99.48 0.71 -16.66 16 23 H -0.28 -14.61 7.11 99.48 0.71 -13.90 16 24 C 0.18 9.69 4.56 85.82 0.39 10.08 16 25 C 0.10 4.04 3.99 38.51 0.15 4.19 16 26 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 27 C -0.09 -3.00 9.22 22.53 0.21 -2.79 16 28 C -0.09 -2.28 5.13 -19.90 -0.10 -2.38 16 29 C -0.09 -1.78 5.38 29.85 0.16 -1.62 16 30 C -0.14 -2.52 9.72 71.98 0.70 -1.82 16 31 H 0.05 0.64 6.76 -2.39 -0.02 0.62 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 0.75 8.05 -2.39 -0.02 0.73 16 35 H 0.08 0.90 5.61 -2.39 -0.01 0.89 16 36 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.16 2.91 4.22 -2.91 -0.01 2.89 16 38 H 0.12 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.10 1.83 6.62 -2.39 -0.02 1.81 16 40 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.04 1.33 7.68 -2.39 -0.02 1.31 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.05 2.06 7.87 -2.38 -0.02 2.04 16 44 H 0.24 15.76 8.31 -92.71 -0.77 14.99 16 45 H 0.00 -0.20 7.99 -2.39 -0.02 -0.22 16 46 H 0.05 3.00 5.00 -2.39 -0.01 2.98 16 47 H 0.10 3.93 7.67 -2.91 -0.02 3.91 16 48 H 0.06 1.34 8.05 -2.39 -0.02 1.32 16 49 H 0.10 1.52 5.57 -2.39 -0.01 1.51 16 50 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 51 H 0.07 1.02 6.79 -2.39 -0.02 1.01 16 52 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -89.97 396.75 3.71 -86.27 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.91 Total: 10.78 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.61 Total: 5.43 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -4.79 Total: -122.72 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.06 Total: -33.95 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.03 Total: 54.18 kcal Total: -89.97 3.71 -86.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084875237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.216 kcal (2) G-P(sol) polarization free energy of solvation -89.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds