Wall clock time and date at job start Wed Apr 1 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46507 * 119.99592 * 2 1 4 4 C 1.52996 * 109.47085 * 269.72628 * 3 2 1 5 5 H 1.08996 * 112.97083 * 294.16267 * 4 3 2 6 6 C 1.53950 * 113.76874 * 65.84190 * 4 3 2 7 7 C 1.53946 * 86.28963 * 137.90582 * 6 4 3 8 8 N 1.47575 * 86.11537 * 336.39209 * 7 6 4 9 9 C 1.36943 * 134.48679 * 204.63942 * 8 7 6 10 10 H 1.08004 * 119.99279 * 184.87498 * 9 8 7 11 11 C 1.38803 * 120.00433 * 4.86784 * 9 8 7 12 12 N 1.31619 * 119.99742 * 5.23288 * 11 9 8 13 13 Si 1.86800 * 120.00160 * 185.22316 * 11 9 8 14 14 H 1.48503 * 109.47198 * 5.01004 * 13 11 9 15 15 H 1.48504 * 109.47073 * 125.00541 * 13 11 9 16 16 H 1.48494 * 109.47475 * 245.00460 * 13 11 9 17 17 C 1.34769 * 120.00030 * 180.02562 * 2 1 3 18 18 O 1.21287 * 120.00153 * 174.65564 * 17 2 1 19 19 C 1.50699 * 120.00028 * 354.93084 * 17 2 1 20 20 H 1.08995 * 115.55193 * 329.71187 * 19 17 2 21 21 C 1.53004 * 117.49903 * 184.03740 * 19 17 2 22 22 H 1.09003 * 117.49845 * 0.02562 * 21 19 17 23 23 C 1.50698 * 117.49945 * 145.02132 * 21 19 17 24 24 C 1.38240 * 119.99994 * 8.33518 * 23 21 19 25 25 C 1.38231 * 120.00046 * 179.78795 * 24 23 21 26 26 C 1.38235 * 119.99982 * 0.46976 * 25 24 23 27 27 C 1.38232 * 119.99945 * 359.76138 * 26 25 24 28 28 C 1.38229 * 120.00012 * 0.02733 * 27 26 25 29 29 C 1.53001 * 117.49711 * 115.41643 * 19 17 2 30 30 C 1.53005 * 117.49867 * 214.97893 * 29 19 17 31 31 C 1.52997 * 117.50003 * 0.02562 * 29 19 17 32 32 H 1.09004 * 109.46624 * 269.99964 * 1 2 3 33 33 H 1.09003 * 109.47192 * 29.99776 * 1 2 3 34 34 H 1.08998 * 109.47115 * 149.99884 * 1 2 3 35 35 H 1.09003 * 109.47219 * 29.73073 * 3 2 1 36 36 H 1.09006 * 109.46359 * 149.73154 * 3 2 1 37 37 H 1.09002 * 113.74011 * 252.24846 * 6 4 3 38 38 H 1.09002 * 113.74153 * 23.55505 * 6 4 3 39 39 H 1.08998 * 113.76904 * 90.69463 * 7 6 4 40 40 H 1.09001 * 113.76687 * 222.09228 * 7 6 4 41 41 H 0.97004 * 119.99894 * 179.97438 * 12 11 9 42 42 H 1.08002 * 119.99540 * 0.02562 * 24 23 21 43 43 H 1.08009 * 120.00218 * 180.25363 * 25 24 23 44 44 H 1.08001 * 119.99737 * 179.79167 * 26 25 24 45 45 H 1.08002 * 120.00004 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.00283 * 179.97438 * 28 27 26 47 47 H 1.08991 * 109.47132 * 111.39115 * 30 29 19 48 48 H 1.08998 * 109.46891 * 231.39636 * 30 29 19 49 49 H 1.09002 * 109.46785 * 351.39385 * 30 29 19 50 50 H 1.09003 * 109.47238 * 54.06463 * 31 29 19 51 51 H 1.08998 * 109.46940 * 174.05949 * 31 29 19 52 52 H 1.08996 * 109.47294 * 294.06216 * 31 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4584 1.7071 -1.4424 5 1 3.1309 1.0354 -1.9760 6 6 1.1799 2.0562 -2.2258 7 6 1.9686 3.2552 -2.7828 8 7 2.8097 3.1342 -1.5762 9 6 3.5990 3.9989 -0.8660 10 1 4.1894 3.6351 -0.0380 11 6 3.6406 5.3430 -1.2104 12 7 2.8453 5.8061 -2.1512 13 14 4.8251 6.4944 -0.3382 14 1 5.6868 5.7123 0.5843 15 1 5.6738 7.1849 -1.3423 16 1 4.0565 7.5014 0.4365 17 6 2.1389 -1.1671 -0.0005 18 8 3.3478 -1.1694 -0.0984 19 6 1.3899 -2.4697 0.1142 20 1 0.4602 -2.4290 0.6817 21 6 2.2162 -3.7544 0.2031 22 1 3.3016 -3.6573 0.1790 23 6 1.6822 -4.8668 1.0682 24 6 0.4116 -4.7756 1.6052 25 6 -0.0799 -5.7979 2.3952 26 6 0.7027 -6.9071 2.6561 27 6 1.9750 -6.9961 2.1231 28 6 2.4649 -5.9758 1.3295 29 6 1.4484 -3.4257 -1.0789 30 6 0.1972 -4.2517 -1.3844 31 6 2.2634 -2.9864 -2.2969 32 1 -0.3633 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 1.6063 2.0297 0.5097 36 1 3.1479 1.1396 0.5181 37 1 0.9128 1.3174 -2.9814 38 1 0.3402 2.3397 -1.5913 39 1 2.4981 3.0398 -3.7109 40 1 1.3916 4.1790 -2.8253 41 1 2.8741 6.7454 -2.3916 42 1 -0.1984 -3.9072 1.4044 43 1 -1.0741 -5.7285 2.8114 44 1 0.3200 -7.7043 3.2761 45 1 2.5864 -7.8629 2.3266 46 1 3.4591 -6.0451 0.9134 47 1 -0.2437 -3.9104 -2.3210 48 1 0.4689 -5.3036 -1.4727 49 1 -0.5249 -4.1294 -0.5771 50 1 3.2749 -2.7281 -1.9833 51 1 2.3041 -3.8010 -3.0199 52 1 1.7920 -2.1170 -2.7552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085597533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:55 Heat of formation + Delta-G solvation = 72.231835 kcal Electronic energy + Delta-G solvation = -30246.832047 eV Core-core repulsion = 26406.999437 eV Total energy + Delta-G solvation = -3839.832610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.84693 -39.34019 -38.06719 -37.04381 -35.08319 -32.11531 -31.56528 -31.17144 -29.61512 -28.43068 -27.82837 -27.57235 -26.37073 -24.53363 -23.30609 -22.84373 -22.47394 -21.08829 -19.52431 -19.10270 -18.43245 -17.52353 -16.69829 -16.37488 -15.96834 -15.44244 -15.37994 -15.08220 -14.69289 -14.41613 -14.26107 -13.92129 -13.80677 -13.62940 -13.45534 -13.14499 -12.88307 -12.71240 -12.61611 -12.48583 -12.42406 -12.26572 -12.22626 -11.98491 -11.65842 -11.41710 -11.25503 -11.09911 -10.98902 -10.82763 -10.67572 -10.50924 -10.41110 -10.06432 -9.79303 -9.72070 -9.58527 -9.43759 -9.16256 -8.76884 -8.73229 -8.28445 -6.81112 -5.71344 -3.04949 1.05526 1.15123 2.58086 3.12533 3.41206 3.41688 3.47864 3.50041 3.89083 4.23095 4.46705 4.50082 4.54364 4.64594 4.73242 4.75555 4.88861 4.93974 4.99216 5.17058 5.23865 5.27444 5.34076 5.37406 5.42104 5.45595 5.53538 5.60011 5.66968 5.72676 5.75357 5.75821 5.80291 5.81982 5.87114 5.90755 5.99744 6.02520 6.20331 6.23463 6.26162 6.27632 6.33277 6.41637 6.47570 6.66653 6.74209 6.75303 6.87086 7.29685 7.49455 7.64403 7.65500 8.05186 8.41235 9.09628 9.76233 10.65927 11.44150 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.002332 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.450771 B =12004.004626 C =12396.030578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.603 5.603 3 C 0.119 3.881 4 C 0.133 3.867 5 H 0.047 0.953 6 C -0.157 4.157 7 C 0.152 3.848 8 N -0.602 5.602 9 C -0.219 4.219 10 H 0.078 0.922 11 C -0.009 4.009 12 N -0.920 5.920 13 Si 0.908 3.092 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.542 3.458 18 O -0.536 6.536 19 C -0.176 4.176 20 H 0.122 0.878 21 C -0.083 4.083 22 H 0.126 0.874 23 C -0.043 4.043 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.111 4.111 29 C -0.078 4.078 30 C -0.117 4.117 31 C -0.123 4.123 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.021 0.979 40 H 0.081 0.919 41 H 0.252 0.748 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.071 0.929 51 H 0.063 0.937 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 -25.608 5.161 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.336 5.336 3 C -0.004 4.004 4 C 0.025 3.975 5 H 0.064 0.936 6 C -0.195 4.195 7 C 0.026 3.974 8 N -0.329 5.329 9 C -0.346 4.346 10 H 0.096 0.904 11 C -0.205 4.205 12 N -0.567 5.567 13 Si 0.739 3.261 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.330 3.670 18 O -0.414 6.414 19 C -0.197 4.197 20 H 0.140 0.860 21 C -0.102 4.102 22 H 0.144 0.856 23 C -0.043 4.043 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.146 4.146 27 C -0.136 4.136 28 C -0.129 4.129 29 C -0.079 4.079 30 C -0.174 4.174 31 C -0.180 4.180 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.082 0.918 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.479 -25.250 5.192 27.465 hybrid contribution 0.643 0.806 0.512 1.151 sum -8.836 -24.444 5.704 26.610 Atomic orbital electron populations 1.21865 0.79924 1.03495 1.01382 1.47711 1.06826 1.06125 1.72922 1.21781 0.96932 0.82698 0.98993 1.22507 0.93591 0.88233 0.93199 0.93576 1.23775 0.97136 0.99340 0.99261 1.22308 0.90215 0.95981 0.88847 1.45995 1.55487 1.03410 1.27987 1.19053 1.18053 0.87942 1.09595 0.90433 1.24754 0.99942 0.96573 0.99245 1.69836 1.39917 1.13630 1.33319 0.86097 0.80460 0.80944 0.78593 1.20462 1.21766 1.21777 1.19484 0.87243 0.84091 0.76218 1.90693 1.14117 1.86998 1.49548 1.22694 1.02067 0.89797 1.05176 0.85980 1.21354 0.99144 0.91958 0.97708 0.85615 1.19116 0.94028 0.94372 0.96786 1.21084 0.95566 0.98977 0.98032 1.21117 0.99824 0.94076 0.98563 1.21135 0.94688 0.98296 1.00431 1.21125 0.95987 0.98736 0.97744 1.20979 0.99880 0.93440 0.98628 1.21640 0.98396 0.98325 0.89532 1.21431 0.94871 0.99197 1.01917 1.21439 1.00303 1.01089 0.95210 0.93036 0.90197 0.91342 0.89994 0.90670 0.93514 0.90937 0.96108 0.90130 0.93828 0.86016 0.86123 0.86280 0.86100 0.85926 0.91710 0.91733 0.92028 0.90954 0.91846 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 9.64 59.85 0.58 1.41 16 2 N -0.60 -9.00 2.81 -181.56 -0.51 -9.51 16 3 C 0.12 2.23 5.30 -4.04 -0.02 2.20 16 4 C 0.13 2.81 4.58 -66.86 -0.31 2.50 16 5 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.16 -2.97 6.94 -25.80 -0.18 -3.15 16 7 C 0.15 3.64 7.72 -2.98 -0.02 3.62 16 8 N -0.60 -15.66 3.57 -170.78 -0.61 -16.27 16 9 C -0.22 -6.22 10.50 -15.06 -0.16 -6.38 16 10 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 12 N -0.92 -27.50 11.29 55.49 0.63 -26.88 16 13 Si 0.91 22.58 29.56 -169.99 -5.02 17.55 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 17 C 0.54 8.32 6.60 -10.99 -0.07 8.25 16 18 O -0.54 -10.30 14.87 5.55 0.08 -10.22 16 19 C -0.18 -2.00 3.82 -91.77 -0.35 -2.35 16 20 H 0.12 1.14 5.22 -51.93 -0.27 0.87 16 21 C -0.08 -0.92 5.20 -91.77 -0.48 -1.40 16 22 H 0.13 1.60 7.62 -51.93 -0.40 1.20 16 23 C -0.04 -0.42 5.04 -104.62 -0.53 -0.95 16 24 C -0.12 -1.04 7.78 -39.58 -0.31 -1.35 16 25 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 26 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 28 C -0.11 -1.02 9.74 -39.59 -0.39 -1.40 16 29 C -0.08 -0.79 2.70 -154.51 -0.42 -1.21 16 30 C -0.12 -0.93 8.62 37.16 0.32 -0.61 16 31 C -0.12 -1.39 8.85 37.16 0.33 -1.06 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.89 5.99 -51.93 -0.31 0.58 16 34 H 0.07 0.60 6.81 -51.93 -0.35 0.25 16 35 H 0.08 1.54 8.07 -51.93 -0.42 1.13 16 36 H 0.07 1.56 7.51 -51.93 -0.39 1.17 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.29 6.71 -51.93 -0.35 0.94 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 2.12 6.86 -51.93 -0.36 1.76 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.12 0.93 5.19 -52.49 -0.27 0.66 16 43 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.44 5.94 -51.93 -0.31 0.13 16 50 H 0.07 0.98 6.96 -51.93 -0.36 0.61 16 51 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 52 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -33.31 408.40 -10.97 -44.28 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.40 Total: 1.13 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.29 Total: -6.25 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.49 Total: -52.65 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.31 -10.97 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085597533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.516 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds