Wall clock time and date at job start Wed Apr 1 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47248 * 2 1 4 4 C 1.38255 * 120.00151 * 265.25534 * 3 2 1 5 5 C 1.38209 * 120.00285 * 180.27564 * 4 3 2 6 6 C 1.38256 * 119.99874 * 359.74142 * 5 4 3 7 7 C 1.38212 * 120.00178 * 359.97438 * 6 5 4 8 8 C 1.38220 * 120.00238 * 84.99834 * 3 2 1 9 9 C 1.50699 * 119.99774 * 359.97438 * 8 3 2 10 10 H 1.08999 * 115.56013 * 334.03661 * 9 8 3 11 11 C 1.52995 * 117.49874 * 188.34841 * 9 8 3 12 12 C 1.53000 * 117.49831 * 119.72470 * 9 8 3 13 13 H 1.09001 * 117.49745 * 359.97438 * 12 9 8 14 14 C 1.50701 * 117.50089 * 214.97943 * 12 9 8 15 15 O 1.21284 * 119.99634 * 0.02562 * 14 12 9 16 16 N 1.34767 * 120.00011 * 180.02562 * 14 12 9 17 17 C 1.46506 * 120.00215 * 355.03566 * 16 14 12 18 18 C 1.46501 * 120.00336 * 175.03352 * 16 14 12 19 19 C 1.53000 * 109.47405 * 275.14628 * 18 16 14 20 20 H 1.08999 * 112.77695 * 44.01540 * 19 18 16 21 21 C 1.53493 * 113.46882 * 273.23346 * 19 18 16 22 22 C 1.53756 * 83.25956 * 218.98306 * 21 19 18 23 23 N 1.47064 * 87.88762 * 26.23861 * 22 21 19 24 24 C 1.36935 * 136.05988 * 152.96759 * 23 22 21 25 25 H 1.08004 * 120.00244 * 174.77363 * 24 23 22 26 26 C 1.38811 * 119.99623 * 354.49081 * 24 23 22 27 27 N 1.31619 * 119.99923 * 0.27896 * 26 24 23 28 28 Si 1.86802 * 119.99877 * 180.27829 * 26 24 23 29 29 H 1.48498 * 109.47360 * 90.00430 * 28 26 24 30 30 H 1.48505 * 109.46957 * 210.00342 * 28 26 24 31 31 H 1.48497 * 109.47137 * 329.99947 * 28 26 24 32 32 H 1.09002 * 109.47503 * 59.99841 * 1 2 3 33 33 H 1.08996 * 109.47159 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47460 * 300.00568 * 1 2 3 35 35 H 1.08996 * 109.47029 * 239.99882 * 2 1 3 36 36 H 1.09001 * 109.47470 * 119.99610 * 2 1 3 37 37 H 1.08003 * 120.00281 * 0.03795 * 4 3 2 38 38 H 1.08004 * 120.00462 * 179.76625 * 5 4 3 39 39 H 1.08001 * 120.00348 * 180.02562 * 6 5 4 40 40 H 1.07999 * 120.00569 * 179.97438 * 7 6 5 41 41 H 1.09001 * 117.49972 * 145.01884 * 11 9 8 42 42 H 1.09008 * 117.49958 * 0.02562 * 11 9 8 43 43 H 1.09000 * 109.47010 * 270.00229 * 17 16 14 44 44 H 1.09004 * 109.46629 * 30.00592 * 17 16 14 45 45 H 1.08997 * 109.46974 * 149.99956 * 17 16 14 46 46 H 1.08994 * 109.47467 * 155.14081 * 18 16 14 47 47 H 1.08999 * 109.46593 * 35.14521 * 18 16 14 48 48 H 1.09007 * 114.20436 * 332.74124 * 21 19 18 49 49 H 1.08997 * 114.20426 * 105.36530 * 21 19 18 50 50 H 1.08996 * 113.46204 * 271.50394 * 22 21 19 51 51 H 1.09001 * 113.54961 * 140.98876 * 22 21 19 52 52 H 0.97001 * 119.99792 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3561 2.0396 -1.1932 5 6 2.8223 3.3407 -1.1928 6 6 2.9597 4.0253 0.0005 7 6 2.6304 3.4088 1.1929 8 6 2.1643 2.1072 1.1924 9 6 1.8053 1.4349 2.4925 10 1 1.0699 0.6336 2.4202 11 6 1.7847 2.3010 3.7535 12 6 2.9105 1.2872 3.5401 13 1 3.8974 1.6758 3.2888 14 6 2.8991 0.0449 4.3932 15 8 2.0353 -0.7916 4.2348 16 7 3.8488 -0.1366 5.3320 17 6 4.9535 0.8184 5.4508 18 6 3.7766 -1.2888 6.2340 19 6 2.8711 -0.9519 7.4203 20 1 1.9558 -0.4414 7.1210 21 6 3.6083 -0.2586 8.5744 22 6 2.7017 -1.1440 9.4453 23 7 2.6387 -2.0906 8.3216 24 6 2.4435 -3.4383 8.1774 25 1 2.3628 -3.8698 7.1906 26 6 2.3551 -4.2507 9.2995 27 7 2.4535 -3.7248 10.5021 28 14 2.0965 -6.0902 9.1027 29 1 3.4145 -6.7695 9.0210 30 1 1.3424 -6.6118 10.2709 31 1 1.3269 -6.3518 7.8600 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.2485 1.5049 -2.1254 38 1 3.0788 3.8228 -2.1246 39 1 3.3235 5.0422 0.0009 40 1 2.7381 3.9434 2.1251 41 1 1.0358 2.0696 4.5109 42 1 2.0304 3.3573 3.6428 43 1 5.7792 0.4997 4.8146 44 1 4.6147 1.8064 5.1388 45 1 5.2882 0.8596 6.4873 46 1 4.7759 -1.5297 6.5965 47 1 3.3687 -2.1453 5.6972 48 1 4.6691 -0.5014 8.6371 49 1 3.4050 0.8090 8.6572 50 1 1.7418 -0.6841 9.6797 51 1 3.2026 -1.5475 10.3253 52 1 2.3914 -4.2925 11.2862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085788851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:51 Heat of formation + Delta-G solvation = 71.029258 kcal Electronic energy + Delta-G solvation = -29817.580628 eV Core-core repulsion = 25977.695871 eV Total energy + Delta-G solvation = -3839.884758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -40.57235 -39.51434 -38.05775 -36.41583 -35.12221 -34.38858 -32.14128 -30.85628 -29.55363 -28.72915 -27.87251 -26.44384 -24.55810 -24.03079 -23.81088 -23.39180 -21.77389 -21.24930 -20.30506 -19.24008 -18.73327 -17.51774 -16.78055 -16.52835 -16.12629 -15.62519 -15.31501 -15.20641 -14.66442 -14.48937 -14.13505 -14.02925 -13.71730 -13.60536 -13.51357 -13.38054 -12.94893 -12.66730 -12.63035 -12.44484 -12.26801 -12.02570 -11.92957 -11.78158 -11.59371 -11.49455 -11.09651 -11.05931 -10.98542 -10.82041 -10.74062 -10.68788 -10.55109 -10.39135 -9.81562 -9.75786 -9.67972 -9.40384 -9.00758 -8.74050 -8.68050 -8.23640 -6.82142 -5.70854 -3.04305 1.06199 1.15356 2.63567 3.12394 3.43003 3.45102 3.48253 3.50767 3.91283 4.28961 4.50874 4.52785 4.59238 4.65750 4.70145 4.77633 4.87064 4.98459 5.01843 5.17431 5.22386 5.26575 5.29621 5.31201 5.39496 5.40370 5.48741 5.52776 5.57960 5.69211 5.72116 5.75799 5.79451 5.82693 5.85545 5.89770 5.98060 6.02473 6.11898 6.20907 6.27270 6.31505 6.33865 6.49086 6.49762 6.58775 6.72412 6.77177 6.90553 7.28180 7.47535 7.62227 7.63713 8.05078 8.40881 9.09899 9.76232 10.69961 11.45805 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.002397 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.672382 B =11680.676532 C =12761.648993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.048 4.048 9 C -0.089 4.089 10 H 0.130 0.870 11 C -0.144 4.144 12 C -0.174 4.174 13 H 0.123 0.877 14 C 0.538 3.462 15 O -0.533 6.533 16 N -0.607 5.607 17 C 0.079 3.921 18 C 0.117 3.883 19 C 0.136 3.864 20 H 0.042 0.958 21 C -0.166 4.166 22 C 0.148 3.852 23 N -0.600 5.600 24 C -0.213 4.213 25 H 0.080 0.920 26 C -0.009 4.009 27 N -0.921 5.921 28 Si 0.911 3.089 29 H -0.288 1.288 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.052 0.948 50 H 0.020 0.980 51 H 0.077 0.923 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 18.205 -20.690 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.048 4.048 9 C -0.107 4.107 10 H 0.148 0.852 11 C -0.181 4.181 12 C -0.195 4.195 13 H 0.141 0.859 14 C 0.325 3.675 15 O -0.410 6.410 16 N -0.340 5.340 17 C -0.065 4.065 18 C -0.006 4.006 19 C 0.028 3.972 20 H 0.059 0.941 21 C -0.205 4.205 22 C 0.022 3.978 23 N -0.326 5.326 24 C -0.341 4.341 25 H 0.097 0.903 26 C -0.205 4.205 27 N -0.568 5.568 28 Si 0.741 3.259 29 H -0.215 1.215 30 H -0.217 1.217 31 H -0.206 1.206 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.070 0.930 50 H 0.038 0.962 51 H 0.095 0.905 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.203 17.364 -20.629 27.154 hybrid contribution -0.095 -0.845 -0.005 0.850 sum 3.108 16.519 -20.633 26.614 Atomic orbital electron populations 1.21739 0.94530 1.02037 1.02029 1.20608 0.96441 0.92470 1.03339 1.19759 0.98416 0.96270 0.92356 1.21026 0.99954 0.95189 0.97381 1.21116 1.00058 0.94859 0.98041 1.21079 1.00747 0.99869 0.92507 1.21053 0.99598 0.94533 0.98352 1.19002 0.99246 0.93710 0.92841 1.21141 1.00659 1.01878 0.87060 0.85248 1.23122 0.99376 0.96142 0.99496 1.22376 0.96643 0.98132 1.02318 0.85929 1.19559 0.81409 0.86577 0.79943 1.90726 1.36976 1.44492 1.68768 1.47781 1.25216 1.27186 1.33790 1.21807 0.89250 0.92514 1.02889 1.21880 1.00903 0.87308 0.90535 1.22400 0.94783 0.89559 0.90509 0.94066 1.23767 0.99631 0.97295 0.99774 1.22141 0.94656 0.87148 0.93810 1.45668 1.83915 1.00894 1.02120 1.18930 1.42475 0.79752 0.92909 0.90260 1.24781 1.02571 0.97993 0.95137 1.69827 1.56372 1.33896 0.96703 0.86128 0.77714 0.85028 0.76992 1.21525 1.21679 1.20622 0.92825 0.92159 0.92278 0.91195 0.90107 0.86139 0.86258 0.86177 0.85854 0.87597 0.87542 0.92963 0.91227 0.90599 0.90285 0.90202 0.90573 0.92952 0.96214 0.90479 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.74 37.15 0.36 -1.00 16 2 C -0.09 -0.90 5.38 -27.89 -0.15 -1.05 16 3 C -0.07 -0.68 5.13 -104.62 -0.54 -1.22 16 4 C -0.12 -1.03 9.68 -39.59 -0.38 -1.42 16 5 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 6 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 7 C -0.12 -1.03 9.30 -39.58 -0.37 -1.40 16 8 C -0.05 -0.49 5.61 -104.62 -0.59 -1.08 16 9 C -0.09 -1.00 4.65 -91.78 -0.43 -1.42 16 10 H 0.13 1.69 5.47 -51.93 -0.28 1.41 16 11 C -0.14 -1.43 9.56 -26.73 -0.26 -1.69 16 12 C -0.17 -1.98 4.53 -91.77 -0.42 -2.40 16 13 H 0.12 1.16 7.06 -51.93 -0.37 0.79 16 14 C 0.54 8.49 7.41 -10.99 -0.08 8.41 16 15 O -0.53 -10.74 15.89 5.55 0.09 -10.65 16 16 N -0.61 -9.08 2.88 -181.57 -0.52 -9.60 16 17 C 0.08 0.81 10.07 59.85 0.60 1.42 16 18 C 0.12 2.18 5.34 -4.04 -0.02 2.16 16 19 C 0.14 2.88 4.27 -72.40 -0.31 2.57 16 20 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 21 C -0.17 -3.15 8.03 -26.08 -0.21 -3.36 16 22 C 0.15 3.58 7.54 -8.37 -0.06 3.51 16 23 N -0.60 -15.83 3.64 -176.84 -0.64 -16.48 16 24 C -0.21 -6.16 10.55 -15.06 -0.16 -6.32 16 25 H 0.08 2.26 7.83 -52.48 -0.41 1.84 16 26 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 27 N -0.92 -27.85 11.42 55.49 0.63 -27.21 16 28 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 30 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 31 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.59 7.17 -51.93 -0.37 0.22 16 35 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 36 H 0.08 0.94 6.95 -51.93 -0.36 0.58 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.87 6.02 -52.49 -0.32 0.56 16 41 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.11 0.79 6.18 -51.92 -0.32 0.47 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.57 6.42 -51.93 -0.33 0.24 16 45 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 46 H 0.08 1.40 7.76 -51.93 -0.40 1.00 16 47 H 0.08 1.73 7.52 -51.93 -0.39 1.34 16 48 H 0.08 1.38 7.94 -51.92 -0.41 0.96 16 49 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 2.04 6.91 -51.93 -0.36 1.68 16 52 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 415.95 15.07 6.27 6.27 Total: -1.00 -34.18 415.95 -11.63 -45.81 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.53 Total: 1.48 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -3.89 Total: -7.37 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.53 Total: -53.29 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.18 -11.63 -45.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085788851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.837 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds