Wall clock time and date at job start Wed Apr 1 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.54964 * 2 1 4 4 C 1.52997 * 117.49829 * 214.33400 * 2 1 3 5 5 H 1.09001 * 117.50327 * 145.01538 * 4 2 1 6 6 C 1.50704 * 117.50202 * 359.97438 * 4 2 1 7 7 O 1.21286 * 119.99628 * 16.96861 * 6 4 2 8 8 N 1.34765 * 120.00393 * 196.96725 * 6 4 2 9 9 C 1.46508 * 120.00445 * 179.97438 * 8 6 4 10 10 C 1.52994 * 109.47373 * 179.97438 * 9 8 6 11 11 H 1.09002 * 112.85041 * 45.33719 * 10 9 8 12 12 C 1.53779 * 113.61276 * 176.52812 * 10 9 8 13 13 C 1.53786 * 87.08001 * 139.98306 * 12 10 9 14 14 H 1.09002 * 113.60966 * 89.20335 * 13 12 10 15 15 N 1.46500 * 113.61443 * 220.01839 * 13 12 10 16 16 C 1.36935 * 119.99823 * 205.00008 * 15 13 12 17 17 H 1.08004 * 120.00418 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00012 * 180.02562 * 16 15 13 19 19 N 1.31625 * 119.99799 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00532 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46718 * 59.99878 * 20 18 16 22 22 H 1.48489 * 109.47499 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46754 * 300.00450 * 20 18 16 24 24 C 1.53785 * 113.61680 * 274.13957 * 10 9 8 25 25 C 1.52992 * 117.49917 * 145.67528 * 2 1 3 26 26 H 1.09003 * 117.50198 * 0.02562 * 25 2 1 27 27 C 1.50705 * 117.49764 * 215.00262 * 25 2 1 28 28 C 1.38237 * 119.99783 * 299.72396 * 27 25 2 29 29 C 1.38240 * 119.99864 * 179.77032 * 28 27 25 30 30 C 1.38234 * 119.99504 * 0.50292 * 29 28 27 31 31 C 1.38235 * 120.00344 * 359.74967 * 30 29 28 32 32 C 1.38227 * 119.99861 * 0.02562 * 31 30 29 33 33 H 1.08999 * 109.47587 * 66.05545 * 1 2 3 34 34 H 1.08996 * 109.47291 * 306.05195 * 1 2 3 35 35 H 1.09004 * 109.47475 * 186.05223 * 1 2 3 36 36 H 1.08999 * 109.46725 * 85.58613 * 3 2 1 37 37 H 1.08996 * 109.47051 * 205.58550 * 3 2 1 38 38 H 1.09005 * 109.47045 * 325.58802 * 3 2 1 39 39 H 0.96999 * 120.00337 * 359.97438 * 8 6 4 40 40 H 1.08999 * 109.46662 * 300.00472 * 9 8 6 41 41 H 1.09002 * 109.46335 * 59.99625 * 9 8 6 42 42 H 1.09004 * 113.61566 * 254.53224 * 12 10 9 43 43 H 1.08997 * 113.61388 * 25.43888 * 12 10 9 44 44 H 0.97005 * 119.99958 * 25.00015 * 15 13 12 45 45 H 0.96997 * 119.99687 * 180.02562 * 19 18 16 46 46 H 1.08995 * 113.60945 * 334.56357 * 24 10 9 47 47 H 1.08993 * 113.61554 * 105.47124 * 24 10 9 48 48 H 1.07995 * 120.00117 * 359.97438 * 28 27 25 49 49 H 1.07997 * 120.00019 * 180.23778 * 29 28 27 50 50 H 1.07999 * 119.99363 * 179.73053 * 30 29 28 51 51 H 1.08003 * 119.99517 * 179.97438 * 31 30 29 52 52 H 1.08006 * 119.99856 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2364 -1.1207 -0.7654 5 1 3.1714 -0.8747 -1.2687 6 6 1.3720 -2.1404 -1.4612 7 8 0.2011 -1.9021 -1.6692 8 7 1.9000 -3.3170 -1.8524 9 6 1.0595 -4.3086 -2.5283 10 6 1.8975 -5.5440 -2.8634 11 1 2.5257 -5.8672 -2.0333 12 6 1.0864 -6.6837 -3.5021 13 6 2.2886 -6.9115 -4.4337 14 1 3.0241 -7.6099 -4.0345 15 7 1.9106 -7.2123 -5.8168 16 6 2.7637 -7.9193 -6.6214 17 1 3.7151 -8.2555 -6.2363 18 6 2.4058 -8.2038 -7.9320 19 7 1.2465 -7.7936 -8.4015 20 14 3.5691 -9.1689 -9.0296 21 1 3.8232 -10.5032 -8.4293 22 1 2.9574 -9.3378 -10.3720 23 1 4.8520 -8.4323 -9.1598 24 6 2.6509 -5.4336 -4.1995 25 6 2.2364 -1.1207 0.7652 26 1 1.6112 -1.8584 1.2684 27 6 3.5290 -0.7805 1.4614 28 6 4.6068 -0.3173 0.7301 29 6 5.7909 -0.0007 1.3694 30 6 5.9005 -0.1572 2.7384 31 6 4.8244 -0.6254 3.4690 32 6 3.6389 -0.9375 2.8304 33 1 -0.3634 0.4171 -0.9392 34 1 -0.3634 0.6048 0.8308 35 1 -0.3634 -1.0220 0.1084 36 1 2.2752 1.7422 1.0246 37 1 3.1828 1.3084 -0.4438 38 1 1.5816 2.0739 -0.5808 39 1 2.8365 -3.5075 -1.6865 40 1 0.2364 -4.5940 -1.8733 41 1 0.6605 -3.8802 -3.4478 42 1 0.8949 -7.5161 -2.8249 43 1 0.1901 -6.3441 -4.0211 44 1 1.0559 -6.9106 -6.1625 45 1 0.9963 -7.9928 -9.3172 46 1 2.1830 -4.7516 -4.9094 47 1 3.7204 -5.2582 -4.0844 48 1 4.5226 -0.1997 -0.3401 49 1 6.6317 0.3648 0.7986 50 1 6.8270 0.0860 3.2372 51 1 4.9103 -0.7480 4.5386 52 1 2.7982 -1.3037 3.4011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086088296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:28 Heat of formation + Delta-G solvation = 35.830435 kcal Electronic energy + Delta-G solvation = -28822.197710 eV Core-core repulsion = 24980.786616 eV Total energy + Delta-G solvation = -3841.411093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 7.64 seconds Orbital eigenvalues (eV) -40.95001 -39.45680 -38.57729 -37.27777 -34.66422 -33.28374 -31.63563 -31.26680 -30.39847 -29.47963 -27.65540 -27.32455 -25.09938 -24.76772 -23.76592 -22.85411 -21.95617 -21.01097 -20.19834 -19.36957 -18.95557 -17.58866 -17.05149 -16.68704 -16.06081 -15.75322 -15.37541 -15.15925 -14.79862 -14.67708 -14.39481 -14.27069 -13.85652 -13.72925 -13.65093 -13.40110 -13.18693 -12.94341 -12.86407 -12.74056 -12.53999 -12.20809 -11.91414 -11.84352 -11.79296 -11.40679 -11.37097 -11.23203 -11.17359 -10.82689 -10.63128 -10.52749 -10.22755 -10.19018 -10.14891 -9.82996 -9.71320 -9.45393 -9.26497 -9.00280 -8.86570 -8.82916 -6.96765 -5.78470 -3.07424 0.93968 1.04794 2.44653 3.02878 3.25112 3.42794 3.47180 3.48415 3.66845 4.16199 4.33983 4.37693 4.50941 4.57948 4.64028 4.68147 4.78769 4.85808 4.90741 4.98208 5.06187 5.10945 5.22610 5.23497 5.30206 5.41031 5.46256 5.51237 5.56160 5.62628 5.65534 5.68601 5.76599 5.79774 5.82151 5.85092 5.93046 5.96588 6.08838 6.11968 6.17025 6.23714 6.26122 6.29229 6.33234 6.36494 6.48268 6.59173 6.63475 6.82712 7.11065 7.48715 7.68026 8.20209 8.40077 9.50936 10.09320 10.43531 11.43789 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.001881 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.093551 B =14884.509518 C =15809.511908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.074 4.074 3 C -0.118 4.118 4 C -0.178 4.178 5 H 0.128 0.872 6 C 0.539 3.461 7 O -0.534 6.534 8 N -0.720 5.720 9 C 0.132 3.868 10 C -0.127 4.127 11 H 0.087 0.913 12 C -0.142 4.142 13 C 0.166 3.834 14 H 0.075 0.925 15 N -0.713 5.713 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.161 4.161 25 C -0.090 4.090 26 H 0.117 0.883 27 C -0.046 4.046 28 C -0.118 4.118 29 C -0.116 4.116 30 C -0.125 4.125 31 C -0.117 4.117 32 C -0.112 4.112 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.400 0.600 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 18.559 25.507 32.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.074 4.074 3 C -0.175 4.175 4 C -0.199 4.199 5 H 0.145 0.855 6 C 0.325 3.675 7 O -0.411 6.411 8 N -0.371 5.371 9 C 0.009 3.991 10 C -0.146 4.146 11 H 0.106 0.894 12 C -0.182 4.182 13 C 0.054 3.946 14 H 0.093 0.907 15 N -0.350 5.350 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.202 4.202 25 C -0.109 4.109 26 H 0.135 0.865 27 C -0.046 4.046 28 C -0.136 4.136 29 C -0.134 4.134 30 C -0.143 4.143 31 C -0.135 4.135 32 C -0.130 4.130 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.139 0.861 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.998 18.579 25.200 31.705 hybrid contribution 0.982 -0.585 -0.750 1.367 sum 5.980 17.994 24.450 30.941 Atomic orbital electron populations 1.21404 0.90438 1.03162 1.01529 1.21665 0.95816 0.90472 0.99491 1.21416 1.00125 0.93707 1.02234 1.22664 1.02104 1.00808 0.94303 0.85453 1.19579 0.87481 0.81827 0.78597 1.90703 1.16792 1.78036 1.55584 1.46038 1.14369 1.16701 1.59968 1.21437 0.93099 0.87573 0.96960 1.22634 0.98959 0.94938 0.98098 0.89437 1.23442 0.99386 0.96460 0.98902 1.21549 0.94265 0.92816 0.85990 0.90707 1.42406 1.21008 1.64716 1.06904 1.19255 0.98663 1.26887 0.92786 0.91166 1.24778 0.97262 1.01479 0.97446 1.69653 1.21319 1.50924 1.16110 0.86258 0.80020 0.79875 0.79968 1.21234 1.21683 1.21258 1.23969 0.98885 1.02579 0.94766 1.21323 0.96517 1.02390 0.90661 0.86544 1.19052 0.93358 0.98748 0.93435 1.21090 0.92895 0.99658 0.99956 1.21143 0.97589 0.99901 0.94784 1.21163 0.98781 1.00045 0.94346 1.21132 0.93230 0.99267 0.99906 1.20949 0.97938 1.00390 0.93727 0.91438 0.93097 0.91005 0.91785 0.92061 0.91706 0.76565 0.91845 0.91222 0.92016 0.90118 0.78061 0.93397 0.90381 0.92808 0.85924 0.86010 0.86183 0.86053 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 8.11 37.16 0.30 -0.78 16 2 C -0.07 -0.66 2.70 -154.52 -0.42 -1.07 16 3 C -0.12 -0.87 8.62 37.16 0.32 -0.55 16 4 C -0.18 -1.65 5.17 -91.74 -0.47 -2.12 16 5 H 0.13 1.01 6.08 -51.93 -0.32 0.69 16 6 C 0.54 6.59 7.39 -10.99 -0.08 6.51 16 7 O -0.53 -8.29 13.51 5.55 0.07 -8.22 16 8 N -0.72 -8.11 5.56 -60.29 -0.33 -8.45 16 9 C 0.13 1.73 5.50 -4.04 -0.02 1.71 16 10 C -0.13 -1.69 3.75 -89.81 -0.34 -2.03 16 11 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.14 -2.26 7.40 -25.92 -0.19 -2.45 16 13 C 0.17 3.20 4.48 -67.02 -0.30 2.90 16 14 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 15 N -0.71 -17.80 5.40 -52.54 -0.28 -18.08 16 16 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 C -0.16 -2.65 7.45 -25.82 -0.19 -2.84 16 25 C -0.09 -0.76 5.43 -91.74 -0.50 -1.25 16 26 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 27 C -0.05 -0.36 5.04 -104.62 -0.53 -0.89 16 28 C -0.12 -0.87 7.78 -39.58 -0.31 -1.18 16 29 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 30 C -0.13 -0.83 10.05 -39.58 -0.40 -1.23 16 31 C -0.12 -0.79 10.05 -39.59 -0.40 -1.19 16 32 C -0.11 -0.83 9.74 -39.59 -0.39 -1.21 16 33 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.84 6.32 -51.93 -0.33 0.51 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.42 5.93 -51.93 -0.31 0.11 16 38 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 39 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 44 H 0.39 10.26 7.92 -40.82 -0.32 9.94 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.12 0.80 5.19 -52.49 -0.27 0.53 16 49 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 50 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 51 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 52 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 415.91 15.07 6.27 6.27 Total: -1.00 -31.94 415.91 -11.71 -43.66 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -8.59 Total: 11.30 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -4.55 Total: -16.29 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.11 Total: -54.02 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.22 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.94 -11.71 -43.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086088296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.486 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.64 seconds