Wall clock time and date at job start Wed Apr 1 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.46889 * 2 1 4 4 C 1.38248 * 120.00252 * 264.97397 * 3 2 1 5 5 C 1.38220 * 120.00090 * 180.02562 * 4 3 2 6 6 C 1.38250 * 119.99777 * 359.95899 * 5 4 3 7 7 C 1.38209 * 120.00338 * 359.85480 * 6 5 4 8 8 C 1.38210 * 119.99652 * 85.00571 * 3 2 1 9 9 C 1.50703 * 120.00346 * 359.96987 * 8 3 2 10 10 H 1.08999 * 115.55073 * 334.33674 * 9 8 3 11 11 C 1.53001 * 117.50080 * 188.62780 * 9 8 3 12 12 C 1.52999 * 117.49519 * 120.00374 * 9 8 3 13 13 H 1.08994 * 117.50198 * 359.97438 * 12 9 8 14 14 C 1.50705 * 117.49858 * 214.98286 * 12 9 8 15 15 O 1.21284 * 119.99673 * 359.97438 * 14 12 9 16 16 N 1.34774 * 120.00229 * 180.02562 * 14 12 9 17 17 C 1.46495 * 120.00193 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47099 * 179.97438 * 17 16 14 19 19 H 1.08999 * 112.84830 * 43.81108 * 18 17 16 20 20 C 1.53788 * 113.61203 * 175.00150 * 18 17 16 21 21 C 1.53782 * 87.08008 * 140.06511 * 20 18 17 22 22 H 1.08999 * 113.61144 * 89.19617 * 21 20 18 23 23 N 1.46492 * 113.61530 * 220.01397 * 21 20 18 24 24 C 1.36935 * 120.00376 * 205.00073 * 23 21 20 25 25 H 1.08003 * 119.99724 * 0.02562 * 24 23 21 26 26 C 1.38810 * 120.00063 * 180.02562 * 24 23 21 27 27 N 1.31622 * 119.99887 * 180.02562 * 26 24 23 28 28 Si 1.86798 * 120.00212 * 359.97438 * 26 24 23 29 29 H 1.48506 * 109.47297 * 89.99941 * 28 26 24 30 30 H 1.48503 * 109.47261 * 330.00122 * 28 26 24 31 31 H 1.48500 * 109.47454 * 210.00115 * 28 26 24 32 32 C 1.53773 * 113.69239 * 272.53321 * 18 17 16 33 33 H 1.09000 * 109.47241 * 300.00159 * 1 2 3 34 34 H 1.09005 * 109.47446 * 59.99608 * 1 2 3 35 35 H 1.08995 * 109.47509 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47402 * 240.00340 * 2 1 3 37 37 H 1.08996 * 109.47179 * 119.99890 * 2 1 3 38 38 H 1.07999 * 120.00155 * 359.97438 * 4 3 2 39 39 H 1.07996 * 119.99644 * 179.97438 * 5 4 3 40 40 H 1.08001 * 119.99760 * 180.02562 * 6 5 4 41 41 H 1.07998 * 120.00554 * 180.21324 * 7 6 5 42 42 H 1.08997 * 117.49769 * 145.02295 * 11 9 8 43 43 H 1.08996 * 117.49756 * 359.97438 * 11 9 8 44 44 H 0.96998 * 119.99924 * 359.97438 * 16 14 12 45 45 H 1.09002 * 109.47219 * 59.99642 * 17 16 14 46 46 H 1.09008 * 109.47352 * 300.00026 * 17 16 14 47 47 H 1.08993 * 113.61548 * 25.51474 * 20 18 17 48 48 H 1.09003 * 113.68622 * 254.62494 * 20 18 17 49 49 H 0.97009 * 119.99477 * 25.00658 * 23 21 20 50 50 H 0.97006 * 119.99732 * 180.02562 * 27 26 24 51 51 H 1.09003 * 113.61146 * 105.45972 * 32 18 17 52 52 H 1.09001 * 113.61852 * 334.55935 * 32 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3616 2.0377 -1.1926 5 6 2.8227 3.3407 -1.1925 6 6 2.9539 4.0274 0.0002 7 6 2.6211 3.4121 1.1921 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4348 2.4925 10 1 1.0738 0.6301 2.4194 11 6 1.7785 2.3022 3.7526 12 6 2.9091 1.2928 3.5426 13 1 3.8948 1.6853 3.2930 14 6 2.9012 0.0514 4.3970 15 8 2.0406 -0.7884 4.2383 16 7 3.8497 -0.1251 5.3380 17 6 3.8417 -1.3316 6.1689 18 6 5.0161 -1.2841 7.1484 19 1 5.1401 -0.3062 7.6135 20 6 5.0289 -2.4495 8.1518 21 6 6.5542 -2.4933 7.9615 22 1 7.0988 -1.8469 8.6497 23 7 7.0998 -3.8517 7.9046 24 6 8.4054 -4.0801 8.2484 25 1 9.0329 -3.2589 8.5618 26 6 8.9224 -5.3672 8.1940 27 7 10.1773 -5.5869 8.5249 28 14 7.8369 -6.7877 7.6525 29 1 7.9356 -6.9529 6.1800 30 1 6.4278 -6.5040 8.0255 31 1 8.2843 -8.0357 8.3216 32 6 6.3206 -1.8647 6.5776 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3634 -1.0276 -0.0005 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 2.2592 1.5012 -2.1243 39 1 3.0803 3.8223 -2.1242 40 1 3.3139 5.0457 0.0002 41 1 2.7202 3.9497 2.1235 42 1 1.0290 2.0683 4.5087 43 1 2.0208 3.3590 3.6413 44 1 4.5377 0.5467 5.4652 45 1 3.9350 -2.2117 5.5326 46 1 2.9058 -1.3834 6.7254 47 1 4.5180 -3.3420 7.7909 48 1 4.7224 -2.1642 9.1582 49 1 6.5360 -4.5893 7.6233 50 1 10.5387 -6.4863 8.4865 51 1 7.0570 -1.1060 6.3127 52 1 6.1630 -2.5975 5.7862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086180531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:49 Heat of formation + Delta-G solvation = 31.818937 kcal Electronic energy + Delta-G solvation = -28480.438587 eV Core-core repulsion = 24638.853542 eV Total energy + Delta-G solvation = -3841.585045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 7.02 seconds Orbital eigenvalues (eV) -40.71036 -39.66331 -38.66623 -36.65155 -34.76572 -34.51667 -33.33580 -31.02196 -30.72804 -29.66893 -27.97843 -25.23351 -24.81833 -24.25425 -24.05933 -23.23115 -21.40628 -21.00864 -20.66512 -20.13851 -19.28438 -17.74512 -17.42410 -16.91417 -16.20333 -15.89884 -15.48914 -15.35033 -14.98288 -14.77153 -14.39759 -14.26963 -14.17276 -13.85339 -13.73211 -13.54178 -13.30142 -12.86550 -12.69979 -12.57393 -12.23528 -12.17426 -12.09719 -12.00121 -11.73305 -11.65393 -11.58992 -11.21941 -11.18898 -10.91762 -10.88475 -10.75621 -10.50554 -10.37576 -10.15908 -9.94957 -9.81799 -9.56166 -9.12531 -9.10610 -8.90945 -8.81047 -7.28725 -5.79998 -3.15539 0.94308 1.04958 2.34023 2.97596 3.29248 3.36410 3.39641 3.44386 3.70958 4.17525 4.35185 4.44610 4.49805 4.53921 4.56792 4.66571 4.74388 4.82955 4.85300 4.86963 4.91028 5.08130 5.09636 5.16354 5.18443 5.26958 5.30295 5.37679 5.39579 5.52628 5.55831 5.64210 5.66740 5.68956 5.70765 5.72818 5.77640 5.83346 5.83758 5.97231 6.15642 6.16213 6.17668 6.18692 6.21088 6.35763 6.36601 6.48279 6.66228 6.66448 6.95810 7.39231 7.96279 8.10174 8.39820 9.17577 9.90408 10.10172 11.38154 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.001806 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.299586 B =15502.744713 C =15781.826656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.052 4.052 9 C -0.084 4.084 10 H 0.130 0.870 11 C -0.145 4.145 12 C -0.178 4.178 13 H 0.125 0.875 14 C 0.540 3.460 15 O -0.543 6.543 16 N -0.720 5.720 17 C 0.132 3.868 18 C -0.126 4.126 19 H 0.091 0.909 20 C -0.145 4.145 21 C 0.172 3.828 22 H 0.084 0.916 23 N -0.737 5.737 24 C -0.248 4.248 25 H 0.091 0.909 26 C 0.004 3.996 27 N -0.933 5.933 28 Si 0.884 3.116 29 H -0.284 1.284 30 H -0.277 1.277 31 H -0.290 1.290 32 C -0.161 4.161 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.402 0.598 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.362 0.638 50 H 0.260 0.740 51 H 0.058 0.942 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.067 21.703 -16.846 34.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.138 4.138 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.052 4.052 9 C -0.103 4.103 10 H 0.148 0.852 11 C -0.182 4.182 12 C -0.199 4.199 13 H 0.143 0.857 14 C 0.326 3.674 15 O -0.420 6.420 16 N -0.370 5.370 17 C 0.009 3.991 18 C -0.146 4.146 19 H 0.109 0.891 20 C -0.185 4.185 21 C 0.060 3.940 22 H 0.102 0.898 23 N -0.377 5.377 24 C -0.378 4.378 25 H 0.109 0.891 26 C -0.192 4.192 27 N -0.580 5.580 28 Si 0.714 3.286 29 H -0.210 1.210 30 H -0.203 1.203 31 H -0.217 1.217 32 C -0.202 4.202 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.236 0.764 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.196 0.804 50 H 0.070 0.930 51 H 0.077 0.923 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.401 21.047 -16.837 33.804 hybrid contribution -0.138 -0.708 -0.390 0.820 sum -20.540 20.339 -17.227 33.650 Atomic orbital electron populations 1.21738 0.94560 1.01966 1.02033 1.20611 0.96380 0.92507 1.03391 1.19742 0.98419 0.96248 0.92373 1.21044 0.99820 0.95189 0.97440 1.21144 0.99770 0.94805 0.98125 1.21094 1.00570 0.99969 0.92502 1.21047 0.99608 0.94462 0.98376 1.18964 0.99738 0.93750 0.92742 1.21125 1.00290 1.01725 0.87142 0.85240 1.23135 0.99097 0.96438 0.99570 1.22360 0.97087 0.97915 1.02503 0.85707 1.19592 0.81231 0.86640 0.79947 1.90701 1.37507 1.44701 1.69127 1.45960 1.30623 1.23757 1.36686 1.21441 0.98619 0.86903 0.92166 1.22637 0.95271 0.99334 0.97329 0.89075 1.23470 0.99841 0.97137 0.98073 1.21505 0.90829 0.87516 0.94120 0.89809 1.42764 1.10924 1.03404 1.80577 1.19135 0.86008 0.94835 1.37833 0.89138 1.24702 0.95981 0.97113 1.01371 1.69706 1.13036 1.20921 1.54347 0.86554 0.80277 0.83151 0.78576 1.21046 1.20278 1.21676 1.23912 0.95034 1.00039 1.01166 0.92385 0.92739 0.92197 0.91070 0.90207 0.86046 0.86140 0.86085 0.85866 0.87716 0.87395 0.76406 0.91322 0.91715 0.90355 0.91627 0.80449 0.93027 0.92279 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.74 37.16 0.36 -0.73 16 2 C -0.09 -0.76 5.38 -27.88 -0.15 -0.91 16 3 C -0.07 -0.59 5.13 -104.63 -0.54 -1.13 16 4 C -0.12 -0.92 9.68 -39.58 -0.38 -1.30 16 5 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 6 C -0.12 -0.87 10.05 -39.59 -0.40 -1.27 16 7 C -0.12 -0.88 9.30 -39.58 -0.37 -1.25 16 8 C -0.05 -0.45 5.61 -104.62 -0.59 -1.04 16 9 C -0.08 -0.75 4.66 -91.77 -0.43 -1.17 16 10 H 0.13 1.33 5.47 -51.93 -0.28 1.05 16 11 C -0.15 -1.03 9.56 -26.73 -0.26 -1.29 16 12 C -0.18 -1.54 5.82 -91.77 -0.53 -2.08 16 13 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 14 C 0.54 6.36 7.61 -10.98 -0.08 6.27 16 15 O -0.54 -8.42 16.26 5.55 0.09 -8.33 16 16 N -0.72 -7.56 5.56 -60.29 -0.33 -7.89 16 17 C 0.13 1.60 5.51 -4.04 -0.02 1.58 16 18 C -0.13 -1.55 3.75 -89.81 -0.34 -1.88 16 19 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.15 -2.13 7.39 -25.91 -0.19 -2.32 16 21 C 0.17 3.13 4.48 -67.12 -0.30 2.83 16 22 H 0.08 1.55 8.10 -51.93 -0.42 1.12 16 23 N -0.74 -17.18 5.20 -52.64 -0.27 -17.46 16 24 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 25 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 26 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 27 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 28 Si 0.88 22.15 27.73 -169.99 -4.71 17.43 16 29 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 31 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 32 C -0.16 -2.48 7.43 -25.92 -0.19 -2.67 16 33 H 0.06 0.46 7.17 -51.93 -0.37 0.08 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.08 0.78 6.94 -51.93 -0.36 0.42 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.12 0.70 6.02 -52.49 -0.32 0.39 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.11 0.56 6.17 -51.93 -0.32 0.24 16 44 H 0.40 3.24 8.47 -40.82 -0.35 2.90 16 45 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 46 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 47 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.36 8.36 5.79 -40.82 -0.24 8.13 16 50 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 51 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 LS Contribution 418.26 15.07 6.30 6.30 Total: -1.00 -33.45 418.26 -11.77 -45.21 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -8.55 Total: 9.86 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -5.06 Total: -16.69 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.17 Total: -53.78 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.45 -11.77 -45.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086180531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.031 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.02 seconds