Wall clock time and date at job start Wed Apr 1 2020 03:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.46889 * 2 1 4 4 C 1.38248 * 120.00252 * 264.97397 * 3 2 1 5 5 C 1.38220 * 120.00090 * 180.02562 * 4 3 2 6 6 C 1.38250 * 119.99777 * 359.95899 * 5 4 3 7 7 C 1.38209 * 120.00338 * 359.85480 * 6 5 4 8 8 C 1.38210 * 119.99652 * 85.00571 * 3 2 1 9 9 C 1.50703 * 120.00346 * 359.96987 * 8 3 2 10 10 H 1.08999 * 115.55073 * 334.33674 * 9 8 3 11 11 C 1.53001 * 117.50080 * 188.62780 * 9 8 3 12 12 C 1.52999 * 117.49519 * 120.00374 * 9 8 3 13 13 H 1.08994 * 117.50198 * 359.97438 * 12 9 8 14 14 C 1.50705 * 117.49858 * 214.98286 * 12 9 8 15 15 O 1.21284 * 119.99673 * 359.97438 * 14 12 9 16 16 N 1.34774 * 120.00229 * 180.02562 * 14 12 9 17 17 C 1.46495 * 120.00193 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47099 * 179.97438 * 17 16 14 19 19 H 1.08999 * 112.84830 * 43.81108 * 18 17 16 20 20 C 1.53788 * 113.61203 * 175.00150 * 18 17 16 21 21 C 1.53782 * 87.08008 * 140.06511 * 20 18 17 22 22 H 1.08999 * 113.61144 * 89.19617 * 21 20 18 23 23 N 1.46492 * 113.61530 * 220.01397 * 21 20 18 24 24 C 1.36935 * 120.00376 * 205.00073 * 23 21 20 25 25 H 1.08003 * 119.99724 * 0.02562 * 24 23 21 26 26 C 1.38810 * 120.00063 * 180.02562 * 24 23 21 27 27 N 1.31622 * 119.99887 * 180.02562 * 26 24 23 28 28 Si 1.86798 * 120.00212 * 359.97438 * 26 24 23 29 29 H 1.48506 * 109.47297 * 89.99941 * 28 26 24 30 30 H 1.48503 * 109.47261 * 330.00122 * 28 26 24 31 31 H 1.48500 * 109.47454 * 210.00115 * 28 26 24 32 32 C 1.53773 * 113.69239 * 272.53321 * 18 17 16 33 33 H 1.09000 * 109.47241 * 300.00159 * 1 2 3 34 34 H 1.09005 * 109.47446 * 59.99608 * 1 2 3 35 35 H 1.08995 * 109.47509 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47402 * 240.00340 * 2 1 3 37 37 H 1.08996 * 109.47179 * 119.99890 * 2 1 3 38 38 H 1.07999 * 120.00155 * 359.97438 * 4 3 2 39 39 H 1.07996 * 119.99644 * 179.97438 * 5 4 3 40 40 H 1.08001 * 119.99760 * 180.02562 * 6 5 4 41 41 H 1.07998 * 120.00554 * 180.21324 * 7 6 5 42 42 H 1.08997 * 117.49769 * 145.02295 * 11 9 8 43 43 H 1.08996 * 117.49756 * 359.97438 * 11 9 8 44 44 H 0.96998 * 119.99924 * 359.97438 * 16 14 12 45 45 H 1.09002 * 109.47219 * 59.99642 * 17 16 14 46 46 H 1.09008 * 109.47352 * 300.00026 * 17 16 14 47 47 H 1.08993 * 113.61548 * 25.51474 * 20 18 17 48 48 H 1.09003 * 113.68622 * 254.62494 * 20 18 17 49 49 H 0.97009 * 119.99477 * 25.00658 * 23 21 20 50 50 H 0.97006 * 119.99732 * 180.02562 * 27 26 24 51 51 H 1.09003 * 113.61146 * 105.45972 * 32 18 17 52 52 H 1.09001 * 113.61852 * 334.55935 * 32 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3616 2.0377 -1.1926 5 6 2.8227 3.3407 -1.1925 6 6 2.9539 4.0274 0.0002 7 6 2.6211 3.4121 1.1921 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4348 2.4925 10 1 1.0738 0.6301 2.4194 11 6 1.7785 2.3022 3.7526 12 6 2.9091 1.2928 3.5426 13 1 3.8948 1.6853 3.2930 14 6 2.9012 0.0514 4.3970 15 8 2.0406 -0.7884 4.2383 16 7 3.8497 -0.1251 5.3380 17 6 3.8417 -1.3316 6.1689 18 6 5.0161 -1.2841 7.1484 19 1 5.1401 -0.3062 7.6135 20 6 5.0289 -2.4495 8.1518 21 6 6.5542 -2.4933 7.9615 22 1 7.0988 -1.8469 8.6497 23 7 7.0998 -3.8517 7.9046 24 6 8.4054 -4.0801 8.2484 25 1 9.0329 -3.2589 8.5618 26 6 8.9224 -5.3672 8.1940 27 7 10.1773 -5.5869 8.5249 28 14 7.8369 -6.7877 7.6525 29 1 7.9356 -6.9529 6.1800 30 1 6.4278 -6.5040 8.0255 31 1 8.2843 -8.0357 8.3216 32 6 6.3206 -1.8647 6.5776 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3634 -1.0276 -0.0005 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 2.2592 1.5012 -2.1243 39 1 3.0803 3.8223 -2.1242 40 1 3.3139 5.0457 0.0002 41 1 2.7202 3.9497 2.1235 42 1 1.0290 2.0683 4.5087 43 1 2.0208 3.3590 3.6413 44 1 4.5377 0.5467 5.4652 45 1 3.9350 -2.2117 5.5326 46 1 2.9058 -1.3834 6.7254 47 1 4.5180 -3.3420 7.7909 48 1 4.7224 -2.1642 9.1582 49 1 6.5360 -4.5893 7.6233 50 1 10.5387 -6.4863 8.4865 51 1 7.0570 -1.1060 6.3127 52 1 6.1630 -2.5975 5.7862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086180531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:40 Heat of formation + Delta-G solvation = 12.833806 kcal Electronic energy + Delta-G solvation = -28481.261844 eV Core-core repulsion = 24638.853542 eV Total energy + Delta-G solvation = -3842.408302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.44396 -40.51629 -39.82690 -37.36626 -36.08807 -35.11038 -35.00271 -32.77067 -31.52859 -30.24176 -29.14578 -26.48119 -26.01926 -25.11231 -24.72493 -24.40571 -22.36129 -21.98891 -21.48688 -20.98450 -20.55467 -19.36845 -18.48782 -17.60734 -17.12345 -16.81415 -16.43285 -16.41070 -16.09457 -15.88146 -15.74130 -15.19144 -14.91636 -14.75721 -14.64842 -14.45835 -14.37310 -14.08228 -13.97110 -13.58676 -13.26706 -13.20112 -13.13707 -13.04903 -12.75815 -12.69771 -12.67468 -12.30708 -12.16701 -11.94648 -11.85705 -11.79304 -11.71052 -11.59058 -11.47388 -11.36345 -11.15581 -10.91548 -10.82187 -10.07871 -9.66536 -9.38841 -9.27445 -8.03669 -5.35857 0.38156 0.50364 1.36372 1.38760 1.46003 1.48222 2.13845 2.46729 2.67650 3.08694 3.26648 3.52183 3.58444 3.68417 3.71244 3.80455 3.87446 3.90951 3.96330 4.08141 4.13028 4.16773 4.26798 4.28399 4.32060 4.37770 4.46435 4.54787 4.62439 4.63704 4.68785 4.73094 4.78867 4.94253 4.95379 4.95899 4.97386 5.02708 5.06690 5.11888 5.17548 5.21183 5.25230 5.32915 5.34509 5.44568 5.63026 5.65282 5.65446 5.77486 5.78654 6.13914 6.22381 6.55885 7.07150 7.23684 7.85670 8.03088 9.17777 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.001806 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.299586 B =15502.744713 C =15781.826656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.086 4.086 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.128 4.128 7 C -0.121 4.121 8 C -0.064 4.064 9 C -0.093 4.093 10 H 0.108 0.892 11 C -0.125 4.125 12 C -0.178 4.178 13 H 0.143 0.857 14 C 0.536 3.464 15 O -0.587 6.587 16 N -0.710 5.710 17 C 0.137 3.863 18 C -0.096 4.096 19 H 0.121 0.879 20 C -0.136 4.136 21 C 0.145 3.855 22 H 0.079 0.921 23 N -0.745 5.745 24 C -0.230 4.230 25 H 0.060 0.940 26 C -0.067 4.067 27 N -0.983 5.983 28 Si 0.952 3.048 29 H -0.282 1.282 30 H -0.253 1.253 31 H -0.296 1.296 32 C -0.155 4.155 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.101 0.899 43 H 0.135 0.865 44 H 0.416 0.584 45 H 0.048 0.952 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.364 0.636 50 H 0.257 0.743 51 H 0.066 0.934 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.763 24.103 -17.604 36.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.086 4.086 4 C -0.146 4.146 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.139 4.139 8 C -0.064 4.064 9 C -0.112 4.112 10 H 0.126 0.874 11 C -0.162 4.162 12 C -0.199 4.199 13 H 0.161 0.839 14 C 0.324 3.676 15 O -0.467 6.467 16 N -0.361 5.361 17 C 0.014 3.986 18 C -0.115 4.115 19 H 0.139 0.861 20 C -0.176 4.176 21 C 0.037 3.963 22 H 0.097 0.903 23 N -0.385 5.385 24 C -0.361 4.361 25 H 0.078 0.922 26 C -0.258 4.258 27 N -0.634 5.634 28 Si 0.780 3.220 29 H -0.208 1.208 30 H -0.177 1.177 31 H -0.223 1.223 32 C -0.195 4.195 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.120 0.880 43 H 0.153 0.847 44 H 0.253 0.747 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.198 0.802 50 H 0.066 0.934 51 H 0.085 0.915 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.133 23.522 -17.596 36.780 hybrid contribution 0.403 -1.334 -0.160 1.403 sum -21.730 22.187 -17.756 35.774 Atomic orbital electron populations 1.21701 0.94130 1.02053 1.02005 1.20554 0.96794 0.92707 1.02558 1.19879 0.99311 0.96346 0.93108 1.21249 0.99945 0.95833 0.97561 1.21451 0.99192 0.94569 0.99231 1.21426 0.99971 1.00964 0.92232 1.21294 0.99085 0.93954 0.99535 1.19039 1.00505 0.94448 0.92395 1.21019 1.00061 1.02001 0.88092 0.87435 1.23250 0.97635 0.97307 0.97981 1.22336 0.98323 0.97101 1.02161 0.83923 1.20125 0.80530 0.87065 0.79930 1.90684 1.39273 1.46404 1.70377 1.45852 1.30731 1.23463 1.36034 1.21248 0.98497 0.86952 0.91943 1.22463 0.93234 0.99777 0.95994 0.86119 1.23360 0.96284 0.98103 0.99823 1.21941 0.93121 0.85269 0.96017 0.90283 1.42807 1.09260 1.05651 1.80826 1.19135 0.87620 0.93829 1.35559 0.92168 1.25505 0.97419 1.00128 1.02773 1.69881 1.15231 1.21325 1.56979 0.85444 0.79526 0.79128 0.77895 1.20803 1.17729 1.22253 1.23738 0.97102 0.99829 0.98876 0.93118 0.91943 0.92059 0.90512 0.92304 0.85044 0.84262 0.83916 0.83904 0.88030 0.84715 0.74675 0.93352 0.91515 0.90684 0.89916 0.80242 0.93422 0.91548 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.74 71.98 0.70 -1.47 16 2 C -0.09 -1.52 5.38 29.85 0.16 -1.36 16 3 C -0.09 -1.48 5.13 -19.87 -0.10 -1.58 16 4 C -0.13 -1.87 9.68 22.27 0.22 -1.65 16 5 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 6 C -0.13 -1.47 10.05 22.27 0.22 -1.25 16 7 C -0.12 -1.52 9.30 22.27 0.21 -1.31 16 8 C -0.06 -1.03 5.61 -19.86 -0.11 -1.14 16 9 C -0.09 -1.58 4.66 -11.54 -0.05 -1.63 16 10 H 0.11 2.31 5.47 -2.39 -0.01 2.30 16 11 C -0.12 -1.49 9.56 30.60 0.29 -1.20 16 12 C -0.18 -2.79 5.82 -11.54 -0.07 -2.86 16 13 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 14 C 0.54 12.03 7.61 87.66 0.67 12.70 16 15 O -0.59 -18.31 16.26 -3.04 -0.05 -18.36 16 16 N -0.71 -13.37 5.56 -463.05 -2.57 -15.95 16 17 C 0.14 3.07 5.51 86.38 0.48 3.55 16 18 C -0.10 -2.07 3.75 -10.27 -0.04 -2.10 16 19 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 20 C -0.14 -3.65 7.39 31.12 0.23 -3.42 16 21 C 0.15 5.12 4.48 45.52 0.20 5.32 16 22 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 23 N -0.74 -34.30 5.20 -320.47 -1.67 -35.97 16 24 C -0.23 -13.07 10.45 84.03 0.88 -12.19 16 25 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 26 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 27 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 28 Si 0.95 46.14 27.73 68.60 1.90 48.04 16 29 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 30 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 31 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 32 C -0.16 -4.51 7.43 31.12 0.23 -4.28 16 33 H 0.05 0.84 7.17 -2.39 -0.02 0.82 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.16 8.05 -2.39 -0.02 1.14 16 37 H 0.06 1.24 6.94 -2.39 -0.02 1.22 16 38 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.14 1.11 6.02 -2.91 -0.02 1.09 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.13 0.88 6.17 -2.39 -0.01 0.86 16 44 H 0.42 5.40 8.47 -92.71 -0.79 4.62 16 45 H 0.05 1.31 7.85 -2.39 -0.02 1.29 16 46 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.36 16.34 5.79 -92.70 -0.54 15.81 16 50 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 51 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 52 H 0.06 2.05 7.90 -2.39 -0.02 2.03 16 Total: -1.00 -75.03 418.26 2.27 -72.76 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.45 Total: 33.27 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 4.81 Total: -20.73 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -3.94 Total: -114.98 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.05 Total: -18.36 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.90 Total: 48.04 kcal Total: -75.03 2.27 -72.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086180531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.597 kcal (2) G-P(sol) polarization free energy of solvation -75.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds