Wall clock time and date at job start Wed Apr 1 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99752 * 2 1 4 4 C 1.38206 * 119.99715 * 179.79323 * 3 2 1 5 5 C 1.38259 * 120.00086 * 0.41975 * 4 3 2 6 6 C 1.50700 * 120.00053 * 179.81307 * 5 4 3 7 7 H 1.09003 * 115.55220 * 154.05314 * 6 5 4 8 8 C 1.53003 * 117.50011 * 8.34404 * 6 5 4 9 9 C 1.52996 * 60.00130 * 252.51139 * 8 6 5 10 10 H 1.09007 * 117.51967 * 107.47481 * 9 8 6 11 11 C 1.50696 * 117.50005 * 252.50938 * 9 8 6 12 12 O 1.21284 * 120.00158 * 68.62644 * 11 9 8 13 13 N 1.34782 * 119.99990 * 248.62107 * 11 9 8 14 14 C 1.46499 * 119.99847 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.46974 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.84949 * 45.33483 * 15 14 13 17 17 C 1.53781 * 113.61707 * 176.53042 * 15 14 13 18 18 C 1.53777 * 87.08336 * 140.06298 * 17 15 14 19 19 H 1.09008 * 113.61204 * 89.11878 * 18 17 15 20 20 N 1.46492 * 113.61596 * 219.93501 * 18 17 15 21 21 C 1.36939 * 120.00033 * 205.00444 * 20 18 17 22 22 H 1.08000 * 120.00196 * 359.97438 * 21 20 18 23 23 C 1.38822 * 119.99927 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99586 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99982 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46692 * 89.99863 * 25 23 21 27 27 H 1.48497 * 109.47074 * 209.99810 * 25 23 21 28 28 H 1.48497 * 109.46978 * 330.00238 * 25 23 21 29 29 C 1.53775 * 87.07992 * 334.56762 * 18 17 15 30 30 C 1.38213 * 120.00196 * 359.53582 * 5 4 3 31 31 C 1.38208 * 119.99872 * 179.97438 * 2 1 3 32 32 C 1.50697 * 120.00412 * 359.97438 * 31 2 1 33 33 H 1.08998 * 109.46783 * 270.02264 * 1 2 3 34 34 H 1.09000 * 109.47404 * 30.01746 * 1 2 3 35 35 H 1.08998 * 109.47323 * 150.02367 * 1 2 3 36 36 H 1.08000 * 119.99991 * 0.02562 * 3 2 1 37 37 H 1.08001 * 120.00191 * 180.23234 * 4 3 2 38 38 H 1.08997 * 117.49566 * 145.02286 * 8 6 5 39 39 H 1.09004 * 117.49590 * 0.02562 * 8 6 5 40 40 H 0.96991 * 119.99849 * 0.02562 * 13 11 9 41 41 H 1.09001 * 109.46950 * 60.00362 * 14 13 11 42 42 H 1.08992 * 109.47264 * 300.00256 * 14 13 11 43 43 H 1.08997 * 113.61673 * 254.61847 * 17 15 14 44 44 H 1.09005 * 113.61396 * 25.51675 * 17 15 14 45 45 H 0.97005 * 120.00166 * 24.99923 * 20 18 17 46 46 H 0.97004 * 119.99764 * 179.97438 * 24 23 21 47 47 H 1.08993 * 113.61636 * 270.87622 * 29 18 17 48 48 H 1.09008 * 113.61006 * 139.97865 * 29 18 17 49 49 H 1.07998 * 120.00550 * 180.25938 * 30 5 4 50 50 H 1.09008 * 109.47340 * 270.02567 * 32 31 2 51 51 H 1.09005 * 109.47417 * 30.02102 * 32 31 2 52 52 H 1.08995 * 109.47407 * 150.02596 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0043 5 6 4.2717 0.0000 -0.0001 6 6 5.7787 0.0001 0.0003 7 1 6.2487 -0.8859 0.4273 8 6 6.4851 1.3421 0.2027 9 6 6.4855 0.6776 -1.1754 10 1 5.8604 1.1229 -1.9495 11 6 7.7784 0.0692 -1.6542 12 8 8.2208 -0.9206 -1.1107 13 7 8.4431 0.6252 -2.6865 14 6 9.7003 0.0341 -3.1516 15 6 10.2451 0.8517 -4.3245 16 1 10.2049 1.9263 -4.1462 17 6 11.6109 0.3626 -4.8347 18 6 11.0886 0.6326 -6.2557 19 1 11.2791 1.6474 -6.6054 20 7 11.4830 -0.3881 -7.2296 21 6 11.5585 -0.0722 -8.5600 22 1 11.3270 0.9293 -8.8912 23 6 11.9327 -1.0394 -9.4829 24 7 12.0048 -0.7358 -10.7615 25 14 12.3339 -2.7715 -8.9099 26 1 11.0981 -3.5949 -8.9203 27 1 13.3382 -3.3745 -9.8225 28 1 12.8841 -2.7219 -7.5315 29 6 9.6733 0.4317 -5.6889 30 6 3.5807 -1.1970 0.0008 31 6 2.1981 -1.1969 0.0005 32 6 1.4447 -2.5020 0.0017 33 1 -0.3633 0.0004 1.0277 34 1 -0.3634 0.8898 -0.5141 35 1 -0.3634 -0.8902 -0.5134 36 1 1.6583 2.1327 0.0004 37 1 4.1204 2.1327 0.0081 38 1 7.4200 1.3392 0.7630 39 1 5.8598 2.2249 0.3359 40 1 8.0895 1.4169 -3.1210 41 1 9.5219 -0.9915 -3.4750 42 1 10.4262 0.0376 -2.3386 43 1 12.4413 1.0064 -4.5450 44 1 11.8007 -0.6915 -4.6323 45 1 11.6907 -1.2878 -6.9322 46 1 12.2667 -1.4115 -11.4064 47 1 9.3333 -0.6033 -5.7200 48 1 8.9395 1.1316 -6.0888 49 1 4.1207 -2.1323 0.0016 50 1 1.2630 -2.8158 1.0297 51 1 0.4921 -2.3722 -0.5122 52 1 2.0337 -3.2621 -0.5114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086221462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:47 Heat of formation + Delta-G solvation = 31.503839 kcal Electronic energy + Delta-G solvation = -27980.955537 eV Core-core repulsion = 24139.356829 eV Total energy + Delta-G solvation = -3841.598708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.62544 -39.74313 -38.71123 -36.98993 -34.76426 -33.35219 -33.17922 -32.46793 -30.78126 -28.35732 -27.93434 -26.72236 -25.22489 -24.44347 -23.28296 -23.09982 -22.40244 -20.99634 -20.42512 -19.69315 -19.27178 -17.72864 -17.42010 -16.67111 -16.15108 -15.96660 -15.44694 -15.16342 -15.04336 -14.65655 -14.62881 -14.32705 -14.10981 -13.79897 -13.50062 -13.28386 -13.18960 -13.10727 -12.69911 -12.67889 -12.50309 -12.30547 -12.22895 -12.14715 -11.99820 -11.64349 -11.58982 -11.43169 -11.24489 -10.92244 -10.89142 -10.77149 -10.50124 -10.37143 -10.15634 -9.93637 -9.81043 -9.55791 -9.10652 -9.05900 -8.90621 -8.66586 -7.28505 -5.79849 -3.15336 0.92245 1.06125 2.34743 2.97686 3.26907 3.36658 3.39942 3.44587 3.70983 4.16040 4.35945 4.44746 4.49274 4.53992 4.57032 4.64019 4.72756 4.81431 4.83022 4.86025 4.91595 4.97393 5.10034 5.11723 5.20933 5.27301 5.30620 5.37861 5.39966 5.42448 5.45705 5.48236 5.56366 5.64989 5.69055 5.71108 5.77905 5.80538 5.84251 5.86488 6.12161 6.16100 6.17131 6.21525 6.28946 6.32558 6.36932 6.48613 6.66778 6.68580 6.96206 7.40229 7.96554 8.11235 8.39976 9.17826 9.90656 10.10433 11.38326 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.001690 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.420326 B =16562.034411 C =17366.133396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.121 4.121 5 C -0.054 4.054 6 C -0.082 4.082 7 H 0.126 0.874 8 C -0.145 4.145 9 C -0.177 4.177 10 H 0.125 0.875 11 C 0.540 3.460 12 O -0.544 6.544 13 N -0.720 5.720 14 C 0.132 3.868 15 C -0.127 4.127 16 H 0.091 0.909 17 C -0.145 4.145 18 C 0.172 3.828 19 H 0.084 0.916 20 N -0.737 5.737 21 C -0.249 4.249 22 H 0.091 0.909 23 C 0.005 3.995 24 N -0.933 5.933 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.277 1.277 29 C -0.161 4.161 30 C -0.105 4.105 31 C -0.084 4.084 32 C -0.119 4.119 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.402 0.598 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.124 0.876 50 H 0.070 0.930 51 H 0.070 0.930 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.461 5.188 27.285 35.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.054 4.054 6 C -0.100 4.100 7 H 0.144 0.856 8 C -0.182 4.182 9 C -0.199 4.199 10 H 0.143 0.857 11 C 0.326 3.674 12 O -0.421 6.421 13 N -0.370 5.370 14 C 0.009 3.991 15 C -0.146 4.146 16 H 0.109 0.891 17 C -0.185 4.185 18 C 0.060 3.940 19 H 0.102 0.898 20 N -0.377 5.377 21 C -0.379 4.379 22 H 0.109 0.891 23 C -0.191 4.191 24 N -0.580 5.580 25 Si 0.714 3.286 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.202 4.202 30 C -0.123 4.123 31 C -0.084 4.084 32 C -0.175 4.175 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.236 0.764 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.196 0.804 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.077 0.923 49 H 0.142 0.858 50 H 0.089 0.911 51 H 0.089 0.911 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.093 4.567 27.378 34.861 hybrid contribution 0.183 -0.838 -0.058 0.860 sum -20.910 3.729 27.320 34.605 Atomic orbital electron populations 1.20859 0.91339 1.02894 1.02289 1.19777 0.95996 0.92697 1.00706 1.20971 0.94002 0.97446 1.00794 1.21012 0.94141 0.97602 1.01166 1.19067 0.92783 0.93342 1.00218 1.21055 0.90507 0.98216 1.00271 0.85591 1.23128 1.02912 0.96345 0.95796 1.22358 0.97562 1.06207 0.93730 0.85681 1.19597 0.84515 0.83555 0.79723 1.90701 1.68640 1.25717 1.57060 1.45954 1.24926 1.31948 1.34198 1.21434 0.84221 0.97327 0.96156 1.22637 0.98611 0.99404 0.93940 0.89064 1.23468 0.95164 1.01297 0.98581 1.21504 0.91657 0.93930 0.86880 0.89813 1.42761 1.81743 1.08887 1.04272 1.19143 1.39205 0.98184 0.81344 0.89135 1.24698 1.01437 0.97775 0.95188 1.69703 1.54210 1.33700 1.00389 0.86556 0.78142 0.86098 0.77789 1.21041 1.21673 1.20272 1.23909 1.00733 1.01258 0.94260 1.20874 0.93326 0.97743 1.00367 1.19748 0.93530 0.94992 1.00165 1.20873 1.00167 0.94071 1.02388 0.91218 0.91632 0.91138 0.86042 0.85880 0.87722 0.87377 0.76394 0.91328 0.91730 0.91619 0.90347 0.80448 0.93027 0.90469 0.92276 0.85844 0.91118 0.91112 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 9.60 36.01 0.35 -0.28 16 2 C -0.09 -0.70 5.88 -104.62 -0.62 -1.32 16 3 C -0.11 -0.85 9.70 -39.59 -0.38 -1.24 16 4 C -0.12 -0.94 9.30 -39.59 -0.37 -1.31 16 5 C -0.05 -0.48 5.61 -104.62 -0.59 -1.07 16 6 C -0.08 -0.74 5.55 -91.77 -0.51 -1.25 16 7 H 0.13 1.32 7.67 -51.93 -0.40 0.92 16 8 C -0.14 -1.05 9.56 -26.73 -0.26 -1.31 16 9 C -0.18 -1.58 5.82 -91.77 -0.53 -2.12 16 10 H 0.13 0.95 8.14 -51.92 -0.42 0.52 16 11 C 0.54 6.52 7.61 -10.98 -0.08 6.44 16 12 O -0.54 -8.68 16.26 5.55 0.09 -8.59 16 13 N -0.72 -7.72 5.56 -60.30 -0.33 -8.06 16 14 C 0.13 1.63 5.50 -4.04 -0.02 1.61 16 15 C -0.13 -1.57 3.75 -89.81 -0.34 -1.90 16 16 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.15 -2.14 7.39 -25.92 -0.19 -2.33 16 18 C 0.17 3.15 4.48 -67.13 -0.30 2.85 16 19 H 0.08 1.55 8.10 -51.92 -0.42 1.13 16 20 N -0.74 -17.25 5.21 -52.64 -0.27 -17.52 16 21 C -0.25 -6.98 10.45 -15.05 -0.16 -7.13 16 22 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 23 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 24 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 25 Si 0.88 22.18 27.74 -169.99 -4.71 17.47 16 26 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 29 C -0.16 -2.49 7.43 -25.92 -0.19 -2.69 16 30 C -0.11 -0.95 9.39 -39.58 -0.37 -1.32 16 31 C -0.08 -0.69 5.88 -104.63 -0.62 -1.31 16 32 C -0.12 -0.72 9.60 36.00 0.35 -0.37 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.07 0.33 5.95 -51.93 -0.31 0.02 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.12 0.73 6.02 -52.49 -0.32 0.41 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.11 0.57 6.17 -51.93 -0.32 0.25 16 40 H 0.40 3.32 8.47 -40.82 -0.35 2.98 16 41 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 45 H 0.36 8.40 5.79 -40.82 -0.24 8.16 16 46 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 47 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 48 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 49 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 50 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 51 H 0.07 0.36 5.95 -51.93 -0.31 0.05 16 52 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 LS Contribution 419.28 15.07 6.32 6.32 Total: -1.00 -33.91 419.28 -11.62 -45.53 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.55 Total: 9.32 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -4.93 Total: -16.01 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.17 Total: -54.04 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.91 -11.62 -45.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086221462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.036 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds