Wall clock time and date at job start Wed Apr 1 2020 02:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99752 * 2 1 4 4 C 1.38206 * 119.99715 * 179.79323 * 3 2 1 5 5 C 1.38259 * 120.00086 * 0.41975 * 4 3 2 6 6 C 1.50700 * 120.00053 * 179.81307 * 5 4 3 7 7 H 1.09003 * 115.55220 * 154.05314 * 6 5 4 8 8 C 1.53003 * 117.50011 * 8.34404 * 6 5 4 9 9 C 1.52996 * 60.00130 * 252.51139 * 8 6 5 10 10 H 1.09007 * 117.51967 * 107.47481 * 9 8 6 11 11 C 1.50696 * 117.50005 * 252.50938 * 9 8 6 12 12 O 1.21284 * 120.00158 * 68.62644 * 11 9 8 13 13 N 1.34782 * 119.99990 * 248.62107 * 11 9 8 14 14 C 1.46499 * 119.99847 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.46974 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.84949 * 45.33483 * 15 14 13 17 17 C 1.53781 * 113.61707 * 176.53042 * 15 14 13 18 18 C 1.53777 * 87.08336 * 140.06298 * 17 15 14 19 19 H 1.09008 * 113.61204 * 89.11878 * 18 17 15 20 20 N 1.46492 * 113.61596 * 219.93501 * 18 17 15 21 21 C 1.36939 * 120.00033 * 205.00444 * 20 18 17 22 22 H 1.08000 * 120.00196 * 359.97438 * 21 20 18 23 23 C 1.38822 * 119.99927 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99586 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99982 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46692 * 89.99863 * 25 23 21 27 27 H 1.48497 * 109.47074 * 209.99810 * 25 23 21 28 28 H 1.48497 * 109.46978 * 330.00238 * 25 23 21 29 29 C 1.53775 * 87.07992 * 334.56762 * 18 17 15 30 30 C 1.38213 * 120.00196 * 359.53582 * 5 4 3 31 31 C 1.38208 * 119.99872 * 179.97438 * 2 1 3 32 32 C 1.50697 * 120.00412 * 359.97438 * 31 2 1 33 33 H 1.08998 * 109.46783 * 270.02264 * 1 2 3 34 34 H 1.09000 * 109.47404 * 30.01746 * 1 2 3 35 35 H 1.08998 * 109.47323 * 150.02367 * 1 2 3 36 36 H 1.08000 * 119.99991 * 0.02562 * 3 2 1 37 37 H 1.08001 * 120.00191 * 180.23234 * 4 3 2 38 38 H 1.08997 * 117.49566 * 145.02286 * 8 6 5 39 39 H 1.09004 * 117.49590 * 0.02562 * 8 6 5 40 40 H 0.96991 * 119.99849 * 0.02562 * 13 11 9 41 41 H 1.09001 * 109.46950 * 60.00362 * 14 13 11 42 42 H 1.08992 * 109.47264 * 300.00256 * 14 13 11 43 43 H 1.08997 * 113.61673 * 254.61847 * 17 15 14 44 44 H 1.09005 * 113.61396 * 25.51675 * 17 15 14 45 45 H 0.97005 * 120.00166 * 24.99923 * 20 18 17 46 46 H 0.97004 * 119.99764 * 179.97438 * 24 23 21 47 47 H 1.08993 * 113.61636 * 270.87622 * 29 18 17 48 48 H 1.09008 * 113.61006 * 139.97865 * 29 18 17 49 49 H 1.07998 * 120.00550 * 180.25938 * 30 5 4 50 50 H 1.09008 * 109.47340 * 270.02567 * 32 31 2 51 51 H 1.09005 * 109.47417 * 30.02102 * 32 31 2 52 52 H 1.08995 * 109.47407 * 150.02596 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0043 5 6 4.2717 0.0000 -0.0001 6 6 5.7787 0.0001 0.0003 7 1 6.2487 -0.8859 0.4273 8 6 6.4851 1.3421 0.2027 9 6 6.4855 0.6776 -1.1754 10 1 5.8604 1.1229 -1.9495 11 6 7.7784 0.0692 -1.6542 12 8 8.2208 -0.9206 -1.1107 13 7 8.4431 0.6252 -2.6865 14 6 9.7003 0.0341 -3.1516 15 6 10.2451 0.8517 -4.3245 16 1 10.2049 1.9263 -4.1462 17 6 11.6109 0.3626 -4.8347 18 6 11.0886 0.6326 -6.2557 19 1 11.2791 1.6474 -6.6054 20 7 11.4830 -0.3881 -7.2296 21 6 11.5585 -0.0722 -8.5600 22 1 11.3270 0.9293 -8.8912 23 6 11.9327 -1.0394 -9.4829 24 7 12.0048 -0.7358 -10.7615 25 14 12.3339 -2.7715 -8.9099 26 1 11.0981 -3.5949 -8.9203 27 1 13.3382 -3.3745 -9.8225 28 1 12.8841 -2.7219 -7.5315 29 6 9.6733 0.4317 -5.6889 30 6 3.5807 -1.1970 0.0008 31 6 2.1981 -1.1969 0.0005 32 6 1.4447 -2.5020 0.0017 33 1 -0.3633 0.0004 1.0277 34 1 -0.3634 0.8898 -0.5141 35 1 -0.3634 -0.8902 -0.5134 36 1 1.6583 2.1327 0.0004 37 1 4.1204 2.1327 0.0081 38 1 7.4200 1.3392 0.7630 39 1 5.8598 2.2249 0.3359 40 1 8.0895 1.4169 -3.1210 41 1 9.5219 -0.9915 -3.4750 42 1 10.4262 0.0376 -2.3386 43 1 12.4413 1.0064 -4.5450 44 1 11.8007 -0.6915 -4.6323 45 1 11.6907 -1.2878 -6.9322 46 1 12.2667 -1.4115 -11.4064 47 1 9.3333 -0.6033 -5.7200 48 1 8.9395 1.1316 -6.0888 49 1 4.1207 -2.1323 0.0016 50 1 1.2630 -2.8158 1.0297 51 1 0.4921 -2.3722 -0.5122 52 1 2.0337 -3.2621 -0.5114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086221462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:46 Heat of formation + Delta-G solvation = 12.048822 kcal Electronic energy + Delta-G solvation = -27981.799170 eV Core-core repulsion = 24139.356829 eV Total energy + Delta-G solvation = -3842.442341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.39268 -40.55333 -39.89438 -37.73225 -36.10700 -35.01831 -33.74906 -33.00242 -32.75387 -29.32938 -28.62330 -27.31816 -26.48297 -25.87100 -24.53604 -23.71196 -22.97043 -22.35234 -21.42846 -20.67922 -20.25629 -19.37199 -18.50131 -17.48145 -16.99131 -16.79476 -16.49274 -16.41119 -16.04033 -15.81855 -15.69263 -15.16105 -14.99272 -14.82997 -14.64157 -14.35752 -14.05503 -13.96806 -13.71581 -13.60078 -13.32621 -13.26888 -13.20457 -13.05329 -13.04820 -12.74748 -12.71070 -12.68983 -12.16934 -11.98431 -11.93298 -11.80866 -11.73068 -11.61424 -11.48094 -11.39377 -11.15676 -10.92126 -10.82611 -10.09130 -9.64009 -9.27667 -9.23555 -8.03870 -5.36032 0.34109 0.48140 1.36333 1.38647 1.45905 1.46386 2.12288 2.46615 2.62808 3.05852 3.26571 3.49702 3.58126 3.67000 3.71236 3.80333 3.87074 3.94173 4.01338 4.07819 4.12514 4.13097 4.21255 4.27373 4.35380 4.37372 4.44482 4.54022 4.67426 4.70859 4.75691 4.78091 4.87218 4.88983 4.94081 4.95275 4.96469 5.02117 5.02583 5.03786 5.10023 5.20943 5.25664 5.32583 5.39706 5.43803 5.56126 5.64990 5.70239 5.77169 5.77368 6.14282 6.22165 6.54759 7.07026 7.22422 7.85543 8.02960 9.17599 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.001690 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.420326 B =16562.034411 C =17366.133396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.102 4.102 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.065 4.065 6 C -0.093 4.093 7 H 0.102 0.898 8 C -0.122 4.122 9 C -0.178 4.178 10 H 0.144 0.856 11 C 0.536 3.464 12 O -0.589 6.589 13 N -0.709 5.709 14 C 0.137 3.863 15 C -0.096 4.096 16 H 0.121 0.879 17 C -0.136 4.136 18 C 0.145 3.855 19 H 0.079 0.921 20 N -0.745 5.745 21 C -0.232 4.232 22 H 0.060 0.940 23 C -0.065 4.065 24 N -0.983 5.983 25 Si 0.952 3.048 26 H -0.282 1.282 27 H -0.295 1.295 28 H -0.253 1.253 29 C -0.155 4.155 30 C -0.128 4.128 31 C -0.098 4.098 32 C -0.118 4.118 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.417 0.583 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.364 0.636 46 H 0.257 0.743 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.115 0.885 50 H 0.077 0.923 51 H 0.082 0.918 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.785 6.495 29.626 37.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.102 4.102 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.065 4.065 6 C -0.111 4.111 7 H 0.121 0.879 8 C -0.159 4.159 9 C -0.198 4.198 10 H 0.162 0.838 11 C 0.324 3.676 12 O -0.470 6.470 13 N -0.360 5.360 14 C 0.013 3.987 15 C -0.115 4.115 16 H 0.139 0.861 17 C -0.176 4.176 18 C 0.036 3.964 19 H 0.097 0.903 20 N -0.385 5.385 21 C -0.363 4.363 22 H 0.078 0.922 23 C -0.257 4.257 24 N -0.634 5.634 25 Si 0.780 3.220 26 H -0.208 1.208 27 H -0.222 1.222 28 H -0.177 1.177 29 C -0.195 4.195 30 C -0.146 4.146 31 C -0.098 4.098 32 C -0.174 4.174 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.120 0.880 39 H 0.154 0.846 40 H 0.254 0.746 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.198 0.802 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.134 0.866 50 H 0.096 0.904 51 H 0.100 0.900 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.442 5.926 29.775 37.754 hybrid contribution 0.544 -1.151 -0.753 1.479 sum -21.898 4.775 29.022 36.669 Atomic orbital electron populations 1.20899 0.89733 1.03617 1.03011 1.20129 0.97345 0.92597 1.00124 1.21305 0.94147 0.98272 1.00100 1.21249 0.94499 0.97830 1.00617 1.19123 0.92555 0.93843 1.00961 1.20950 0.90848 0.98551 1.00796 0.87946 1.23245 1.02718 0.96151 0.93799 1.22337 0.96090 1.06664 0.94750 0.83808 1.20139 0.85239 0.82929 0.79330 1.90683 1.69977 1.27795 1.58567 1.45845 1.24249 1.32142 1.33773 1.21251 0.85026 0.96362 0.96053 1.22466 0.96080 1.00898 0.92041 0.86075 1.23359 0.97026 1.01692 0.95497 1.21941 0.94159 0.92630 0.87626 0.90271 1.42803 1.82333 1.10138 1.03271 1.19146 1.36887 0.96712 0.83558 0.92165 1.25493 1.02652 1.02256 0.95257 1.69878 1.56612 1.35070 1.01822 0.85450 0.77735 0.80600 0.78251 1.20802 1.22225 1.17748 1.23734 0.98979 1.00818 0.96017 1.21010 0.94083 0.97863 1.01659 1.20013 0.93382 0.96207 1.00169 1.20902 1.00384 0.93175 1.02964 0.90402 0.90684 0.90673 0.83954 0.83786 0.87964 0.84622 0.74627 0.93374 0.91489 0.89894 0.90690 0.80248 0.93412 0.91897 0.91502 0.86643 0.90409 0.89974 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.60 71.24 0.68 -0.31 16 2 C -0.10 -1.41 5.88 -19.86 -0.12 -1.53 16 3 C -0.12 -1.53 9.70 22.27 0.22 -1.31 16 4 C -0.12 -1.66 9.30 22.27 0.21 -1.45 16 5 C -0.06 -1.11 5.61 -19.87 -0.11 -1.22 16 6 C -0.09 -1.63 5.55 -11.54 -0.06 -1.70 16 7 H 0.10 2.27 7.67 -2.39 -0.02 2.26 16 8 C -0.12 -1.50 9.56 30.59 0.29 -1.20 16 9 C -0.18 -2.85 5.82 -11.54 -0.07 -2.92 16 10 H 0.14 1.77 8.14 -2.38 -0.02 1.75 16 11 C 0.54 12.33 7.61 87.66 0.67 13.00 16 12 O -0.59 -18.91 16.26 -3.04 -0.05 -18.96 16 13 N -0.71 -13.62 5.56 -463.06 -2.57 -16.19 16 14 C 0.14 3.10 5.50 86.38 0.48 3.57 16 15 C -0.10 -2.08 3.75 -10.27 -0.04 -2.12 16 16 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 17 C -0.14 -3.67 7.39 31.12 0.23 -3.44 16 18 C 0.15 5.14 4.48 45.52 0.20 5.34 16 19 H 0.08 2.86 8.10 -2.38 -0.02 2.84 16 20 N -0.74 -34.41 5.21 -320.46 -1.67 -36.07 16 21 C -0.23 -13.19 10.45 84.04 0.88 -12.31 16 22 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.98 -63.36 13.97 21.65 0.30 -63.06 16 25 Si 0.95 46.18 27.74 68.60 1.90 48.08 16 26 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 29 C -0.16 -4.53 7.43 31.12 0.23 -4.30 16 30 C -0.13 -2.37 9.39 22.27 0.21 -2.16 16 31 C -0.10 -1.56 5.88 -19.87 -0.12 -1.68 16 32 C -0.12 -1.38 9.60 71.24 0.68 -0.69 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 35 H 0.07 0.56 5.95 -2.39 -0.01 0.55 16 36 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.14 1.19 6.02 -2.91 -0.02 1.17 16 38 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.14 0.91 6.17 -2.39 -0.01 0.90 16 40 H 0.42 5.52 8.47 -92.71 -0.79 4.73 16 41 H 0.05 1.32 7.88 -2.39 -0.02 1.30 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 2.11 8.08 -2.38 -0.02 2.09 16 45 H 0.36 16.40 5.79 -92.70 -0.54 15.86 16 46 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 47 H 0.06 2.05 7.92 -2.39 -0.02 2.03 16 48 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 50 H 0.08 0.77 8.14 -2.38 -0.02 0.76 16 51 H 0.08 0.74 5.95 -2.38 -0.01 0.73 16 52 H 0.06 0.77 8.09 -2.39 -0.02 0.75 16 Total: -1.00 -76.11 419.28 2.40 -73.71 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.45 Total: 32.33 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 4.93 Total: -19.84 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -3.94 Total: -115.32 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.96 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Total: -76.11 2.40 -73.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086221462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.759 kcal (2) G-P(sol) polarization free energy of solvation -76.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds