Wall clock time and date at job start Wed Apr 1 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.54964 * 2 1 4 4 C 1.52997 * 117.49829 * 214.33400 * 2 1 3 5 5 H 1.09001 * 117.50327 * 145.01538 * 4 2 1 6 6 C 1.50704 * 117.50202 * 359.97438 * 4 2 1 7 7 O 1.21286 * 119.99628 * 16.96861 * 6 4 2 8 8 N 1.34765 * 120.00393 * 196.96725 * 6 4 2 9 9 C 1.46508 * 120.00445 * 179.97438 * 8 6 4 10 10 C 1.52994 * 109.47373 * 179.97438 * 9 8 6 11 11 H 1.09003 * 112.85081 * 43.80622 * 10 9 8 12 12 C 1.53780 * 113.61279 * 174.99738 * 10 9 8 13 13 C 1.53785 * 87.07762 * 139.98386 * 12 10 9 14 14 H 1.09004 * 113.61125 * 220.01703 * 13 12 10 15 15 N 1.46500 * 113.61236 * 89.20455 * 13 12 10 16 16 C 1.36939 * 119.99727 * 155.00092 * 15 13 12 17 17 H 1.07999 * 120.00037 * 359.97438 * 16 15 13 18 18 C 1.38819 * 119.99817 * 179.97438 * 16 15 13 19 19 N 1.31619 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00099 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46792 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47194 * 119.99937 * 20 18 16 23 23 H 1.48496 * 109.47371 * 240.00452 * 20 18 16 24 24 C 1.53776 * 113.61563 * 272.50014 * 10 9 8 25 25 C 1.52992 * 117.49917 * 145.67528 * 2 1 3 26 26 H 1.09003 * 117.50198 * 0.02562 * 25 2 1 27 27 C 1.50705 * 117.49911 * 214.97660 * 25 2 1 28 28 C 1.38232 * 120.00022 * 299.72968 * 27 25 2 29 29 C 1.38237 * 120.00046 * 179.81010 * 28 27 25 30 30 C 1.38234 * 119.99887 * 0.41195 * 29 28 27 31 31 C 1.38237 * 120.00022 * 359.81657 * 30 29 28 32 32 C 1.38235 * 120.00080 * 359.97438 * 31 30 29 33 33 H 1.08999 * 109.47587 * 66.05545 * 1 2 3 34 34 H 1.08996 * 109.47291 * 306.05195 * 1 2 3 35 35 H 1.09004 * 109.47475 * 186.05223 * 1 2 3 36 36 H 1.08999 * 109.46725 * 85.58613 * 3 2 1 37 37 H 1.08996 * 109.47051 * 205.58550 * 3 2 1 38 38 H 1.09005 * 109.47045 * 325.58802 * 3 2 1 39 39 H 0.96999 * 120.00337 * 359.97438 * 8 6 4 40 40 H 1.08999 * 109.46662 * 300.00472 * 9 8 6 41 41 H 1.09002 * 109.46335 * 59.99625 * 9 8 6 42 42 H 1.09000 * 113.62069 * 254.52946 * 12 10 9 43 43 H 1.09004 * 113.61459 * 25.44109 * 12 10 9 44 44 H 0.96997 * 120.00238 * 334.99255 * 15 13 12 45 45 H 0.97001 * 119.99704 * 180.02562 * 19 18 16 46 46 H 1.09000 * 113.61859 * 334.56532 * 24 10 9 47 47 H 1.09002 * 113.61964 * 105.47324 * 24 10 9 48 48 H 1.08003 * 119.99817 * 359.97438 * 28 27 25 49 49 H 1.07998 * 120.00036 * 180.20854 * 29 28 27 50 50 H 1.08004 * 120.00398 * 179.79082 * 30 29 28 51 51 H 1.08000 * 119.99939 * 179.97438 * 31 30 29 52 52 H 1.08001 * 120.00312 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2364 -1.1207 -0.7654 5 1 3.1714 -0.8747 -1.2687 6 6 1.3720 -2.1404 -1.4612 7 8 0.2011 -1.9021 -1.6692 8 7 1.9000 -3.3170 -1.8524 9 6 1.0595 -4.3086 -2.5283 10 6 1.8975 -5.5440 -2.8634 11 1 2.5454 -5.8514 -2.0424 12 6 1.0797 -6.6976 -3.4678 13 6 2.2629 -6.9321 -4.4217 14 1 1.9609 -7.1726 -5.4410 15 7 3.2684 -7.8572 -3.8930 16 6 4.0740 -8.5565 -4.7516 17 1 3.9679 -8.4263 -5.8185 18 6 5.0271 -9.4327 -4.2507 19 7 5.1561 -9.5917 -2.9505 20 14 6.1257 -10.3871 -5.4219 21 1 5.7816 -10.0330 -6.8225 22 1 7.5462 -10.0439 -5.1587 23 1 5.9218 -11.8435 -5.2158 24 6 2.6191 -5.4500 -4.2180 25 6 2.2364 -1.1207 0.7652 26 1 1.6112 -1.8584 1.2684 27 6 3.5293 -0.7807 1.4609 28 6 4.6069 -0.3178 0.7293 29 6 5.7916 -0.0022 1.3680 30 6 5.9013 -0.1575 2.7371 31 6 4.8252 -0.6249 3.4682 32 6 3.6391 -0.9365 2.8301 33 1 -0.3634 0.4171 -0.9392 34 1 -0.3634 0.6048 0.8308 35 1 -0.3634 -1.0220 0.1084 36 1 2.2752 1.7422 1.0246 37 1 3.1828 1.3084 -0.4438 38 1 1.5816 2.0739 -0.5808 39 1 2.8365 -3.5075 -1.6865 40 1 0.2364 -4.5940 -1.8733 41 1 0.6605 -3.8802 -3.4478 42 1 0.9078 -7.5211 -2.7746 43 1 0.1704 -6.3707 -3.9722 44 1 3.3636 -7.9743 -2.9349 45 1 5.8223 -10.2036 -2.6005 46 1 2.1307 -4.7822 -4.9276 47 1 3.6900 -5.2664 -4.1306 48 1 4.5224 -0.2003 -0.3410 49 1 6.6324 0.3626 0.7968 50 1 6.8279 0.0858 3.2358 51 1 4.9111 -0.7467 4.5379 52 1 2.7985 -1.3020 3.4012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086367447.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:50 Heat of formation + Delta-G solvation = 36.732831 kcal Electronic energy + Delta-G solvation = -29073.517684 eV Core-core repulsion = 25232.145722 eV Total energy + Delta-G solvation = -3841.371962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.89643 -39.41044 -38.60843 -37.24249 -34.63271 -33.21144 -31.56247 -31.18146 -30.33038 -29.41685 -27.63053 -27.31222 -25.07607 -24.70603 -23.65405 -22.78220 -22.08680 -21.42693 -20.13929 -19.29429 -18.37907 -17.55205 -17.24730 -16.62581 -15.96094 -15.68719 -15.28594 -15.11842 -14.81573 -14.46000 -14.39606 -14.11954 -13.90034 -13.71352 -13.64428 -13.36046 -13.15123 -12.90856 -12.79746 -12.70849 -12.49698 -12.31153 -12.15175 -11.93283 -11.78552 -11.40429 -11.29162 -11.11664 -11.05518 -10.87292 -10.57297 -10.49939 -10.16116 -10.15180 -10.03353 -9.71573 -9.69160 -9.42453 -9.17410 -8.97640 -8.89691 -8.75170 -7.01990 -5.82782 -3.11788 1.02703 1.13888 2.48248 3.07414 3.32460 3.39998 3.46018 3.48101 3.73820 4.22199 4.39526 4.43118 4.53978 4.58410 4.72609 4.74630 4.86702 4.90196 4.96775 5.05082 5.11289 5.19310 5.23639 5.30714 5.34669 5.43659 5.44542 5.61521 5.63360 5.66139 5.69737 5.72931 5.75421 5.80657 5.82894 5.85889 5.94721 5.98603 6.09767 6.19748 6.20425 6.25912 6.29266 6.34636 6.35946 6.46431 6.58647 6.72361 6.73097 6.88991 7.02858 7.53703 7.67695 8.23242 8.36407 9.47157 10.04726 10.38898 11.39713 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.002285 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.550244 B =12252.957081 C =14178.313143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.179 4.179 5 H 0.128 0.872 6 C 0.540 3.460 7 O -0.538 6.538 8 N -0.719 5.719 9 C 0.131 3.869 10 C -0.119 4.119 11 H 0.093 0.907 12 C -0.148 4.148 13 C 0.167 3.833 14 H 0.062 0.938 15 N -0.706 5.706 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.168 4.168 25 C -0.089 4.089 26 H 0.117 0.883 27 C -0.047 4.047 28 C -0.118 4.118 29 C -0.116 4.116 30 C -0.125 4.125 31 C -0.117 4.117 32 C -0.111 4.111 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.403 0.597 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.122 0.878 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 23.259 11.060 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.075 4.075 3 C -0.175 4.175 4 C -0.199 4.199 5 H 0.145 0.855 6 C 0.326 3.674 7 O -0.416 6.416 8 N -0.370 5.370 9 C 0.008 3.992 10 C -0.138 4.138 11 H 0.111 0.889 12 C -0.188 4.188 13 C 0.055 3.945 14 H 0.080 0.920 15 N -0.344 5.344 16 C -0.373 4.373 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.209 4.209 25 C -0.107 4.107 26 H 0.135 0.865 27 C -0.047 4.047 28 C -0.136 4.136 29 C -0.134 4.134 30 C -0.143 4.143 31 C -0.135 4.135 32 C -0.130 4.130 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.237 0.763 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.212 23.288 10.740 26.169 hybrid contribution 1.368 -0.778 -0.159 1.582 sum -3.844 22.510 10.580 25.168 Atomic orbital electron populations 1.21396 0.90499 1.03145 1.01411 1.21661 0.95759 0.90474 0.99637 1.21413 1.00114 0.93683 1.02243 1.22664 1.02076 1.00741 0.94453 0.85452 1.19582 0.87431 0.81857 0.78519 1.90683 1.16785 1.78216 1.55877 1.46070 1.14573 1.16563 1.59763 1.21480 0.93269 0.87774 0.96643 1.22705 0.98455 0.94117 0.98535 0.88926 1.23446 0.98150 0.97159 1.00008 1.21054 0.88961 0.88763 0.95718 0.91989 1.42178 1.38681 1.47145 1.06432 1.19338 1.11005 1.17059 0.89856 0.90941 1.24769 0.99929 1.00338 0.95892 1.69671 1.37470 1.40447 1.10442 0.86101 0.80395 0.79682 0.79923 1.20488 1.21838 1.21817 1.23884 1.00318 1.01424 0.95293 1.21320 0.96531 1.02250 0.90647 0.86518 1.19043 0.93374 0.98809 0.93451 1.21075 0.92910 0.99685 0.99894 1.21137 0.97546 0.99937 0.94789 1.21165 0.98759 1.00014 0.94347 1.21134 0.93218 0.99234 0.99930 1.20950 0.97965 1.00309 0.93729 0.91544 0.93126 0.91007 0.91774 0.92046 0.91791 0.76283 0.91914 0.91603 0.91343 0.90481 0.78119 0.93485 0.91424 0.91543 0.85965 0.86010 0.86167 0.86036 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 8.11 37.16 0.30 -0.80 16 2 C -0.07 -0.70 2.70 -154.52 -0.42 -1.11 16 3 C -0.12 -0.91 8.62 37.16 0.32 -0.59 16 4 C -0.18 -1.78 5.17 -91.74 -0.47 -2.25 16 5 H 0.13 1.10 6.08 -51.93 -0.32 0.79 16 6 C 0.54 6.85 7.39 -10.99 -0.08 6.77 16 7 O -0.54 -8.33 13.51 5.55 0.07 -8.25 16 8 N -0.72 -8.77 5.56 -60.29 -0.33 -9.10 16 9 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 10 C -0.12 -1.77 3.63 -89.81 -0.33 -2.10 16 11 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 12 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 13 C 0.17 3.24 4.56 -67.12 -0.31 2.93 16 14 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 15 N -0.71 -17.29 5.31 -52.63 -0.28 -17.57 16 16 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 20 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C -0.17 -2.77 7.43 -25.92 -0.19 -2.97 16 25 C -0.09 -0.83 5.43 -91.74 -0.50 -1.33 16 26 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 27 C -0.05 -0.42 5.04 -104.62 -0.53 -0.95 16 28 C -0.12 -1.01 7.78 -39.58 -0.31 -1.32 16 29 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 30 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 31 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 32 C -0.11 -0.97 9.74 -39.58 -0.39 -1.35 16 33 H 0.07 0.73 8.01 -51.93 -0.42 0.31 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.86 6.32 -51.93 -0.33 0.53 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.45 5.93 -51.93 -0.31 0.14 16 38 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 39 H 0.40 4.44 8.47 -40.82 -0.35 4.09 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 44 H 0.38 9.97 7.90 -40.82 -0.32 9.65 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.12 0.92 5.19 -52.48 -0.27 0.65 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 50 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 51 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 52 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 415.72 15.07 6.26 6.26 Total: -1.00 -31.17 415.72 -11.71 -42.88 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -8.58 Total: 12.86 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -4.55 Total: -17.18 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.11 Total: -53.67 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.07 Total: -8.25 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.17 -11.71 -42.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086367447.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.610 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds