Wall clock time and date at job start Wed Apr 1 2020 02:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.54964 * 2 1 4 4 C 1.52997 * 117.49829 * 214.33400 * 2 1 3 5 5 H 1.09001 * 117.50327 * 145.01538 * 4 2 1 6 6 C 1.50704 * 117.50202 * 359.97438 * 4 2 1 7 7 O 1.21286 * 119.99628 * 16.96861 * 6 4 2 8 8 N 1.34765 * 120.00393 * 196.96725 * 6 4 2 9 9 C 1.46508 * 120.00445 * 179.97438 * 8 6 4 10 10 C 1.52994 * 109.47373 * 179.97438 * 9 8 6 11 11 H 1.09003 * 112.85081 * 43.80622 * 10 9 8 12 12 C 1.53780 * 113.61279 * 174.99738 * 10 9 8 13 13 C 1.53785 * 87.07762 * 139.98386 * 12 10 9 14 14 H 1.09004 * 113.61125 * 220.01703 * 13 12 10 15 15 N 1.46500 * 113.61236 * 89.20455 * 13 12 10 16 16 C 1.36939 * 119.99727 * 155.00092 * 15 13 12 17 17 H 1.07999 * 120.00037 * 359.97438 * 16 15 13 18 18 C 1.38819 * 119.99817 * 179.97438 * 16 15 13 19 19 N 1.31619 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00099 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46792 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47194 * 119.99937 * 20 18 16 23 23 H 1.48496 * 109.47371 * 240.00452 * 20 18 16 24 24 C 1.53776 * 113.61563 * 272.50014 * 10 9 8 25 25 C 1.52992 * 117.49917 * 145.67528 * 2 1 3 26 26 H 1.09003 * 117.50198 * 0.02562 * 25 2 1 27 27 C 1.50705 * 117.49911 * 214.97660 * 25 2 1 28 28 C 1.38232 * 120.00022 * 299.72968 * 27 25 2 29 29 C 1.38237 * 120.00046 * 179.81010 * 28 27 25 30 30 C 1.38234 * 119.99887 * 0.41195 * 29 28 27 31 31 C 1.38237 * 120.00022 * 359.81657 * 30 29 28 32 32 C 1.38235 * 120.00080 * 359.97438 * 31 30 29 33 33 H 1.08999 * 109.47587 * 66.05545 * 1 2 3 34 34 H 1.08996 * 109.47291 * 306.05195 * 1 2 3 35 35 H 1.09004 * 109.47475 * 186.05223 * 1 2 3 36 36 H 1.08999 * 109.46725 * 85.58613 * 3 2 1 37 37 H 1.08996 * 109.47051 * 205.58550 * 3 2 1 38 38 H 1.09005 * 109.47045 * 325.58802 * 3 2 1 39 39 H 0.96999 * 120.00337 * 359.97438 * 8 6 4 40 40 H 1.08999 * 109.46662 * 300.00472 * 9 8 6 41 41 H 1.09002 * 109.46335 * 59.99625 * 9 8 6 42 42 H 1.09000 * 113.62069 * 254.52946 * 12 10 9 43 43 H 1.09004 * 113.61459 * 25.44109 * 12 10 9 44 44 H 0.96997 * 120.00238 * 334.99255 * 15 13 12 45 45 H 0.97001 * 119.99704 * 180.02562 * 19 18 16 46 46 H 1.09000 * 113.61859 * 334.56532 * 24 10 9 47 47 H 1.09002 * 113.61964 * 105.47324 * 24 10 9 48 48 H 1.08003 * 119.99817 * 359.97438 * 28 27 25 49 49 H 1.07998 * 120.00036 * 180.20854 * 29 28 27 50 50 H 1.08004 * 120.00398 * 179.79082 * 30 29 28 51 51 H 1.08000 * 119.99939 * 179.97438 * 31 30 29 52 52 H 1.08001 * 120.00312 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2364 -1.1207 -0.7654 5 1 3.1714 -0.8747 -1.2687 6 6 1.3720 -2.1404 -1.4612 7 8 0.2011 -1.9021 -1.6692 8 7 1.9000 -3.3170 -1.8524 9 6 1.0595 -4.3086 -2.5283 10 6 1.8975 -5.5440 -2.8634 11 1 2.5454 -5.8514 -2.0424 12 6 1.0797 -6.6976 -3.4678 13 6 2.2629 -6.9321 -4.4217 14 1 1.9609 -7.1726 -5.4410 15 7 3.2684 -7.8572 -3.8930 16 6 4.0740 -8.5565 -4.7516 17 1 3.9679 -8.4263 -5.8185 18 6 5.0271 -9.4327 -4.2507 19 7 5.1561 -9.5917 -2.9505 20 14 6.1257 -10.3871 -5.4219 21 1 5.7816 -10.0330 -6.8225 22 1 7.5462 -10.0439 -5.1587 23 1 5.9218 -11.8435 -5.2158 24 6 2.6191 -5.4500 -4.2180 25 6 2.2364 -1.1207 0.7652 26 1 1.6112 -1.8584 1.2684 27 6 3.5293 -0.7807 1.4609 28 6 4.6069 -0.3178 0.7293 29 6 5.7916 -0.0022 1.3680 30 6 5.9013 -0.1575 2.7371 31 6 4.8252 -0.6249 3.4682 32 6 3.6391 -0.9365 2.8301 33 1 -0.3634 0.4171 -0.9392 34 1 -0.3634 0.6048 0.8308 35 1 -0.3634 -1.0220 0.1084 36 1 2.2752 1.7422 1.0246 37 1 3.1828 1.3084 -0.4438 38 1 1.5816 2.0739 -0.5808 39 1 2.8365 -3.5075 -1.6865 40 1 0.2364 -4.5940 -1.8733 41 1 0.6605 -3.8802 -3.4478 42 1 0.9078 -7.5211 -2.7746 43 1 0.1704 -6.3707 -3.9722 44 1 3.3636 -7.9743 -2.9349 45 1 5.8223 -10.2036 -2.6005 46 1 2.1307 -4.7822 -4.9276 47 1 3.6900 -5.2664 -4.1306 48 1 4.5224 -0.2003 -0.3410 49 1 6.6324 0.3626 0.7968 50 1 6.8279 0.0858 3.2358 51 1 4.9111 -0.7467 4.5379 52 1 2.7985 -1.3020 3.4012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086367447.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:43 Heat of formation + Delta-G solvation = 20.604352 kcal Electronic energy + Delta-G solvation = -29074.217068 eV Core-core repulsion = 25232.145722 eV Total energy + Delta-G solvation = -3842.071346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.72583 -40.41755 -39.76004 -38.07626 -35.97593 -34.94628 -32.22897 -32.10548 -31.77805 -30.33630 -28.61467 -28.25996 -26.44555 -25.93892 -25.18740 -23.48021 -23.16971 -22.41622 -21.05439 -20.12345 -19.71505 -19.30592 -18.28577 -17.43725 -17.07521 -16.65641 -16.48615 -16.10831 -15.97253 -15.72451 -15.47378 -15.09737 -15.05748 -14.76352 -14.61970 -14.39737 -14.23184 -14.11830 -13.75917 -13.47540 -13.43085 -13.29674 -13.18816 -12.95299 -12.92549 -12.89502 -12.66051 -12.45868 -12.13822 -12.05201 -11.89587 -11.77466 -11.52321 -11.48180 -11.30380 -11.00286 -10.94217 -10.86246 -10.53519 -10.03152 -9.77925 -9.41205 -9.00716 -7.96180 -5.24441 0.39996 0.53286 1.47547 1.47902 1.52449 1.57992 2.13150 2.55081 2.59078 3.04835 3.36490 3.45166 3.64695 3.68682 3.71292 3.78715 3.84203 3.93707 4.03700 4.13927 4.15947 4.19802 4.28985 4.32015 4.34290 4.40226 4.58446 4.63913 4.71426 4.72592 4.76551 4.80556 4.91885 4.94612 4.97987 4.98458 5.06431 5.06920 5.10756 5.13807 5.19193 5.26691 5.30524 5.35055 5.46399 5.51197 5.57154 5.61919 5.65767 5.66809 5.71435 6.13658 6.27678 6.54926 7.23818 7.32592 8.09637 8.31905 9.27312 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.002285 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.550244 B =12252.957081 C =14178.313143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.074 4.074 3 C -0.113 4.113 4 C -0.181 4.181 5 H 0.143 0.857 6 C 0.539 3.461 7 O -0.568 6.568 8 N -0.716 5.716 9 C 0.142 3.858 10 C -0.102 4.102 11 H 0.079 0.921 12 C -0.135 4.135 13 C 0.144 3.856 14 H 0.060 0.940 15 N -0.720 5.720 16 C -0.241 4.241 17 H 0.077 0.923 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.294 1.294 24 C -0.152 4.152 25 C -0.081 4.081 26 H 0.109 0.891 27 C -0.057 4.057 28 C -0.125 4.125 29 C -0.125 4.125 30 C -0.132 4.132 31 C -0.125 4.125 32 C -0.125 4.125 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.409 0.591 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.091 0.909 47 H 0.047 0.953 48 H 0.131 0.869 49 H 0.138 0.862 50 H 0.138 0.862 51 H 0.138 0.862 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 24.806 10.766 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.074 4.074 3 C -0.170 4.170 4 C -0.202 4.202 5 H 0.161 0.839 6 C 0.326 3.674 7 O -0.447 6.447 8 N -0.367 5.367 9 C 0.018 3.982 10 C -0.121 4.121 11 H 0.097 0.903 12 C -0.174 4.174 13 C 0.034 3.966 14 H 0.078 0.922 15 N -0.358 5.358 16 C -0.373 4.373 17 H 0.094 0.906 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.222 1.222 24 C -0.193 4.193 25 C -0.099 4.099 26 H 0.127 0.873 27 C -0.057 4.057 28 C -0.143 4.143 29 C -0.143 4.143 30 C -0.150 4.150 31 C -0.143 4.143 32 C -0.143 4.143 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.245 0.755 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.124 0.876 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.148 0.852 49 H 0.156 0.844 50 H 0.156 0.844 51 H 0.156 0.844 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.943 24.869 10.417 27.412 hybrid contribution 1.211 -1.219 -0.070 1.720 sum -3.732 23.650 10.348 26.083 Atomic orbital electron populations 1.21313 0.91296 1.01969 1.01449 1.21731 0.95226 0.91274 0.99182 1.21398 1.00383 0.92609 1.02618 1.22665 1.02308 1.00403 0.94803 0.83921 1.19998 0.87287 0.82074 0.78041 1.90673 1.18165 1.78817 1.57091 1.46040 1.14804 1.16355 1.59480 1.21284 0.92889 0.87189 0.96829 1.22478 0.97820 0.94462 0.97323 0.90280 1.23350 0.97996 0.97119 0.98916 1.21384 0.89543 0.89425 0.96270 0.92211 1.42312 1.39665 1.48199 1.05633 1.19705 1.10702 1.16411 0.90434 0.90550 1.25552 1.01875 1.02015 0.97354 1.69818 1.38436 1.41582 1.12131 0.85091 0.78249 0.77878 0.78663 1.19036 1.22074 1.22150 1.23704 0.99598 0.99299 0.96690 1.21246 0.96718 1.01963 0.90018 0.87309 1.19069 0.93313 0.99614 0.93731 1.21222 0.92991 0.99716 1.00380 1.21411 0.97906 0.99758 0.95196 1.21472 0.99466 0.99510 0.94512 1.21402 0.93011 0.98909 1.00949 1.21150 0.98663 1.00597 0.93849 0.92538 0.91657 0.93085 0.91478 0.91343 0.91256 0.75533 0.92026 0.91380 0.92451 0.87629 0.79389 0.94029 0.89024 0.93399 0.85170 0.84443 0.84400 0.84395 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 8.11 71.98 0.58 -1.48 16 2 C -0.07 -1.30 2.70 -52.19 -0.14 -1.44 16 3 C -0.11 -1.57 8.62 71.98 0.62 -0.95 16 4 C -0.18 -3.42 5.17 -11.52 -0.06 -3.48 16 5 H 0.14 2.23 6.08 -2.39 -0.01 2.21 16 6 C 0.54 13.24 7.39 87.66 0.65 13.89 16 7 O -0.57 -17.35 13.51 -3.05 -0.04 -17.39 16 8 N -0.72 -16.70 5.56 -463.06 -2.57 -19.28 16 9 C 0.14 3.56 5.51 86.38 0.48 4.03 16 10 C -0.10 -2.91 3.63 -10.27 -0.04 -2.95 16 11 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 12 C -0.13 -4.11 7.39 31.12 0.23 -3.88 16 13 C 0.14 5.46 4.56 45.52 0.21 5.67 16 14 H 0.06 2.28 8.10 -2.38 -0.02 2.26 16 15 N -0.72 -35.57 5.31 -320.43 -1.70 -37.27 16 16 C -0.24 -13.20 9.97 84.03 0.84 -12.36 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 19 N -0.97 -58.69 13.06 21.65 0.28 -58.40 16 20 Si 0.97 45.73 29.55 68.60 2.03 47.75 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 C -0.15 -4.83 7.43 31.12 0.23 -4.59 16 25 C -0.08 -1.45 5.43 -11.52 -0.06 -1.51 16 26 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 27 C -0.06 -0.97 5.04 -19.86 -0.10 -1.07 16 28 C -0.13 -1.95 7.78 22.27 0.17 -1.78 16 29 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 30 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 31 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 32 C -0.12 -2.03 9.74 22.27 0.22 -1.81 16 33 H 0.06 1.23 8.01 -2.39 -0.02 1.21 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.23 6.32 -2.38 -0.02 1.22 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.86 5.93 -2.39 -0.01 0.84 16 38 H 0.07 0.89 8.09 -2.38 -0.02 0.87 16 39 H 0.41 8.59 8.47 -92.71 -0.79 7.80 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.73 7.84 -2.39 -0.02 1.71 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.11 2.65 8.10 -2.38 -0.02 2.63 16 44 H 0.37 19.82 7.90 -92.71 -0.73 19.09 16 45 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 46 H 0.09 2.49 7.90 -2.39 -0.02 2.47 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.13 1.72 5.19 -2.91 -0.02 1.71 16 49 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 50 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 51 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 52 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -66.98 415.72 2.36 -64.62 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.59 Total: 42.31 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.96 Total: -22.34 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -3.99 Total: -114.95 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.04 Total: -17.39 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -66.98 2.36 -64.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086367447.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.224 kcal (2) G-P(sol) polarization free energy of solvation -66.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds