Wall clock time and date at job start Wed Apr 1 2020 02:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 115.55109 * 2 1 4 4 C 1.38239 * 119.99858 * 65.63424 * 3 2 1 5 5 C 1.38230 * 119.99702 * 179.74810 * 4 3 2 6 6 C 1.38232 * 120.00290 * 0.54426 * 5 4 3 7 7 C 1.38234 * 119.99643 * 359.71121 * 6 5 4 8 8 C 1.38228 * 120.00152 * 0.02562 * 7 6 5 9 9 C 1.52998 * 117.49939 * 214.32824 * 2 1 3 10 10 C 1.53003 * 117.49856 * 145.66923 * 2 1 3 11 11 H 1.08999 * 117.49919 * 359.97438 * 10 2 1 12 12 C 1.50702 * 117.49965 * 214.97934 * 10 2 1 13 13 O 1.21277 * 119.99912 * 319.71989 * 12 10 2 14 14 N 1.34776 * 119.99760 * 139.71058 * 12 10 2 15 15 C 1.46501 * 119.99631 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.46767 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.43445 * 307.53948 * 16 15 14 18 18 C 1.54883 * 110.49029 * 70.22655 * 16 15 14 19 19 C 1.54890 * 102.75016 * 156.61883 * 18 16 15 20 20 C 1.54263 * 104.19830 * 322.05693 * 19 18 16 21 21 H 1.08997 * 110.07529 * 142.91687 * 20 19 18 22 22 N 1.46503 * 110.03187 * 264.32779 * 20 19 18 23 23 C 1.36943 * 119.99766 * 272.16751 * 22 20 19 24 24 H 1.08001 * 119.99701 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99703 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00400 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99449 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47551 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46767 * 120.00304 * 27 25 23 30 30 H 1.48501 * 109.47137 * 239.99927 * 27 25 23 31 31 C 1.53868 * 106.59529 * 23.60807 * 20 19 18 32 32 H 1.08994 * 109.46918 * 34.41904 * 1 2 3 33 33 H 1.08997 * 109.47388 * 274.41340 * 1 2 3 34 34 H 1.09000 * 109.46850 * 154.41351 * 1 2 3 35 35 H 1.08005 * 119.99589 * 359.97438 * 4 3 2 36 36 H 1.08007 * 119.99654 * 180.27659 * 5 4 3 37 37 H 1.08000 * 120.00347 * 179.72310 * 6 5 4 38 38 H 1.08003 * 119.99504 * 179.97438 * 7 6 5 39 39 H 1.08003 * 120.00209 * 179.97438 * 8 7 6 40 40 H 1.09006 * 117.50148 * 0.02562 * 9 2 1 41 41 H 1.09001 * 117.49793 * 144.99836 * 9 2 1 42 42 H 0.96998 * 120.00264 * 0.02562 * 14 12 10 43 43 H 1.09002 * 109.47407 * 300.00241 * 15 14 12 44 44 H 1.08997 * 109.47604 * 60.00207 * 15 14 12 45 45 H 1.09002 * 110.75662 * 274.93081 * 18 16 15 46 46 H 1.09000 * 110.75768 * 38.30432 * 18 16 15 47 47 H 1.09001 * 110.48733 * 203.37238 * 19 18 16 48 48 H 1.09004 * 110.48541 * 80.73877 * 19 18 16 49 49 H 0.96998 * 120.00511 * 92.16045 * 22 20 19 50 50 H 0.96996 * 119.99808 * 179.97438 * 26 25 23 51 51 H 1.09004 * 110.03628 * 240.71831 * 31 20 19 52 52 H 1.09002 * 110.07520 * 119.31252 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.0325 2.1962 1.0906 5 6 2.6330 3.4413 1.0927 6 6 3.3717 3.8543 -0.0003 7 6 3.5148 3.0198 -1.0930 8 6 2.9188 1.7726 -1.0929 9 6 2.2364 -1.1207 -0.7653 10 6 2.2364 -1.1207 0.7654 11 1 1.6112 -1.8578 1.2693 12 6 3.5293 -0.7807 1.4611 13 8 4.3355 -0.0533 0.9209 14 7 3.7894 -1.2846 2.6837 15 6 5.0459 -0.9536 3.3603 16 6 5.0908 -1.6499 4.7219 17 1 4.1889 -1.4283 5.2925 18 6 5.2608 -3.1790 4.5436 19 6 5.8807 -3.6139 5.8947 20 6 6.8486 -2.4675 6.2534 21 1 6.8366 -2.2903 7.3288 22 7 8.2062 -2.8014 5.8154 23 6 9.0393 -3.5051 6.6438 24 1 8.6956 -3.8135 7.6201 25 6 10.3254 -3.8219 6.2285 26 7 10.7440 -3.4465 5.0385 27 14 11.4619 -4.7811 7.3588 28 1 10.7569 -5.0819 8.6307 29 1 11.8577 -6.0519 6.7003 30 1 12.6745 -3.9726 7.6437 31 6 6.3464 -1.2188 5.5077 32 1 -0.3633 0.8477 -0.5809 33 1 -0.3634 0.0791 1.0246 34 1 -0.3633 -0.9269 -0.4438 35 1 1.4511 1.8755 1.9424 36 1 2.5215 4.0931 1.9466 37 1 3.8372 4.8288 -0.0004 38 1 4.0916 3.3426 -1.9471 39 1 3.0302 1.1207 -1.9468 40 1 1.6112 -1.8579 -1.2692 41 1 3.1713 -0.8746 -1.2688 42 1 3.1446 -1.8665 3.1157 43 1 5.8857 -1.2905 2.7524 44 1 5.1094 0.1254 3.5013 45 1 4.2948 -3.6597 4.3893 46 1 5.9389 -3.3987 3.7190 47 1 6.4251 -4.5513 5.7806 48 1 5.1065 -3.7117 6.6558 49 1 8.5150 -2.5242 4.9387 50 1 11.6428 -3.6676 4.7486 51 1 7.1127 -0.8611 4.8199 52 1 6.0900 -0.4351 6.2207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086762700.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:54 Heat of formation + Delta-G solvation = 10.245320 kcal Electronic energy + Delta-G solvation = -29433.473309 eV Core-core repulsion = 25590.952762 eV Total energy + Delta-G solvation = -3842.520547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.68859 -39.07717 -38.13319 -36.90231 -34.77705 -33.23053 -31.06596 -30.90360 -30.56817 -29.19281 -28.74682 -27.35103 -25.10224 -23.42128 -23.29811 -23.01841 -22.26929 -20.54827 -19.95513 -19.44637 -19.09154 -17.65725 -17.08312 -16.63450 -16.12564 -15.31266 -15.23207 -15.02622 -14.83961 -14.70386 -14.47330 -14.16763 -13.76027 -13.56453 -13.46632 -13.24451 -13.20665 -13.05435 -12.71366 -12.62269 -12.42214 -12.15022 -12.03435 -11.40153 -11.26462 -11.19383 -11.18311 -10.80250 -10.72863 -10.65756 -10.55321 -10.45499 -10.28629 -10.22458 -10.17703 -9.94856 -9.72325 -9.60375 -9.00771 -8.93885 -8.86692 -8.67076 -6.91285 -5.74210 -3.02476 1.28007 1.38088 2.43145 3.13618 3.44146 3.49706 3.52047 3.56769 3.73494 4.28440 4.41981 4.49944 4.60990 4.65684 4.84220 4.90894 4.92675 4.94469 5.00327 5.03495 5.13062 5.26434 5.31874 5.36203 5.43317 5.55324 5.56185 5.57687 5.61455 5.69761 5.76173 5.79760 5.80861 5.94165 5.95494 5.96831 6.04760 6.11980 6.16374 6.25297 6.37464 6.40787 6.45809 6.48560 6.50970 6.52822 6.67944 6.78347 6.93687 6.94872 7.12320 7.54399 7.73519 8.29372 8.45067 9.55627 10.15538 10.49407 11.48499 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.002073 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.796809 B =13500.865802 C =14026.565874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.060 4.060 3 C -0.035 4.035 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.094 4.094 9 C -0.136 4.136 10 C -0.179 4.179 11 H 0.120 0.880 12 C 0.536 3.464 13 O -0.527 6.527 14 N -0.724 5.724 15 C 0.129 3.871 16 C -0.102 4.102 17 H 0.073 0.927 18 C -0.112 4.112 19 C -0.146 4.146 20 C 0.175 3.825 21 H 0.048 0.952 22 N -0.721 5.721 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 C -0.121 4.121 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.398 0.602 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.048 0.952 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.072 0.928 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.150 9.529 -11.285 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.035 4.035 4 C -0.126 4.126 5 C -0.138 4.138 6 C -0.140 4.140 7 C -0.136 4.136 8 C -0.112 4.112 9 C -0.174 4.174 10 C -0.201 4.201 11 H 0.138 0.862 12 C 0.322 3.678 13 O -0.403 6.403 14 N -0.375 5.375 15 C 0.006 3.994 16 C -0.121 4.121 17 H 0.091 0.909 18 C -0.149 4.149 19 C -0.187 4.187 20 C 0.064 3.936 21 H 0.066 0.934 22 N -0.362 5.362 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 C -0.160 4.160 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.066 0.934 49 H 0.217 0.783 50 H 0.064 0.936 51 H 0.091 0.909 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.434 9.981 -11.511 28.795 hybrid contribution 0.611 -0.913 0.685 1.294 sum -23.823 9.068 -10.826 27.695 Atomic orbital electron populations 1.21361 0.90561 1.02556 1.02418 1.20183 0.94407 0.88103 1.03373 1.18756 0.97344 0.92898 0.94483 1.20814 1.00096 0.94172 0.97538 1.21039 0.98097 0.96353 0.98274 1.21092 0.99192 0.99727 0.93998 1.21062 0.99592 0.94418 0.98520 1.20858 0.96544 0.95875 0.97883 1.23231 1.03119 0.99806 0.91204 1.22468 0.98047 1.03436 0.96115 0.86187 1.19505 0.86967 0.80091 0.81231 1.90739 1.48132 1.36191 1.65211 1.45944 1.21787 1.51405 1.18379 1.21479 0.85632 0.99562 0.92720 1.22224 0.99327 0.96272 0.94305 0.90852 1.22487 0.99533 0.93673 0.99234 1.23120 0.98637 1.01639 0.95271 1.20795 0.85923 0.90530 0.96342 0.93413 1.42560 1.08791 1.66023 1.18832 1.19303 0.93478 1.26706 0.97389 0.91186 1.24744 0.97628 1.01745 0.96977 1.69672 1.18192 1.51473 1.18748 0.86147 0.81017 0.79425 0.79788 1.20603 1.21949 1.21921 1.22466 0.95965 0.98756 0.98833 0.91465 0.91793 0.91745 0.86796 0.86409 0.86440 0.86343 0.86444 0.87561 0.87378 0.76881 0.91152 0.91852 0.93046 0.91347 0.90985 0.93368 0.78265 0.93595 0.90947 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.77 37.16 0.36 -0.32 16 2 C -0.06 -0.52 2.28 -155.66 -0.35 -0.87 16 3 C -0.03 -0.37 3.09 -104.62 -0.32 -0.70 16 4 C -0.11 -1.17 9.63 -39.58 -0.38 -1.55 16 5 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 6 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 7 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 8 C -0.09 -1.03 8.91 -39.59 -0.35 -1.39 16 9 C -0.14 -1.15 8.90 -26.69 -0.24 -1.38 16 10 C -0.18 -1.63 5.91 -91.73 -0.54 -2.17 16 11 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 12 C 0.54 6.77 7.20 -10.99 -0.08 6.69 16 13 O -0.53 -8.65 14.70 5.56 0.08 -8.57 16 14 N -0.72 -8.24 5.45 -60.30 -0.33 -8.57 16 15 C 0.13 1.75 4.96 -4.04 -0.02 1.73 16 16 C -0.10 -1.35 2.89 -88.96 -0.26 -1.61 16 17 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.11 -1.62 6.19 -24.74 -0.15 -1.77 16 19 C -0.15 -2.52 6.54 -25.07 -0.16 -2.68 16 20 C 0.17 3.42 3.55 -66.82 -0.24 3.18 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -18.01 5.08 -52.34 -0.27 -18.28 16 23 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16 24 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 25 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 26 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 27 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 31 C -0.12 -1.96 6.14 -25.61 -0.16 -2.12 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 35 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.15 7.04 -52.48 -0.37 0.78 16 40 H 0.11 0.64 8.05 -51.93 -0.42 0.22 16 41 H 0.11 1.09 6.96 -51.93 -0.36 0.73 16 42 H 0.40 3.48 8.44 -40.82 -0.34 3.13 16 43 H 0.07 1.12 8.02 -51.93 -0.42 0.71 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 47 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.38 10.26 7.52 -40.82 -0.31 9.96 16 50 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.07 1.30 7.31 -51.93 -0.38 0.92 16 52 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 419.48 15.07 6.32 6.32 Total: -1.00 -33.15 419.48 -11.70 -44.85 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -8.87 Total: 11.69 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -4.34 Total: -17.26 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.13 Total: -54.56 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.15 -11.70 -44.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086762700.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.094 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds