Wall clock time and date at job start Wed Apr 1 2020 02:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.99608 * 2 1 4 4 C 1.38216 * 119.99502 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99958 * 359.80823 * 4 3 2 6 6 C 1.38216 * 120.00296 * 0.44694 * 5 4 3 7 7 C 1.50696 * 120.00241 * 179.78563 * 6 5 4 8 8 H 1.09001 * 115.56452 * 154.03535 * 7 6 5 9 9 C 1.53077 * 117.49243 * 8.32849 * 7 6 5 10 10 C 1.52996 * 117.49887 * 299.72346 * 7 6 5 11 11 H 1.08998 * 117.49893 * 359.97438 * 10 7 6 12 12 C 1.50696 * 117.50131 * 214.97705 * 10 7 6 13 13 O 1.21285 * 119.99808 * 0.08866 * 12 10 7 14 14 N 1.34785 * 120.00252 * 180.08856 * 12 10 7 15 15 C 1.46499 * 120.00050 * 180.02562 * 14 12 10 16 16 C 1.52991 * 109.47156 * 179.97438 * 15 14 12 17 17 H 1.09001 * 110.05670 * 306.41884 * 16 15 14 18 18 C 1.53878 * 110.03348 * 67.83334 * 16 15 14 19 19 C 1.54267 * 106.60189 * 119.28351 * 18 16 15 20 20 C 1.54890 * 104.19109 * 23.61307 * 19 18 16 21 21 H 1.08998 * 110.91276 * 80.44683 * 20 19 18 22 22 N 1.46504 * 110.75007 * 203.74349 * 20 19 18 23 23 C 1.36943 * 119.99781 * 268.32775 * 22 20 19 24 24 H 1.08002 * 119.99788 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99622 * 180.27904 * 23 22 20 26 26 N 1.31622 * 119.99400 * 179.72313 * 25 23 22 27 27 Si 1.86800 * 120.00144 * 359.72086 * 25 23 22 28 28 H 1.48506 * 109.46719 * 90.00417 * 27 25 23 29 29 H 1.48501 * 109.46793 * 210.00071 * 27 25 23 30 30 H 1.48489 * 109.47333 * 330.00315 * 27 25 23 31 31 C 1.54265 * 110.03331 * 184.99658 * 16 15 14 32 32 C 1.38208 * 120.00094 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47344 * 269.97932 * 1 2 3 34 34 H 1.09004 * 109.47528 * 29.98203 * 1 2 3 35 35 H 1.09005 * 109.47385 * 149.97726 * 1 2 3 36 36 H 1.07998 * 120.00480 * 359.97438 * 3 2 1 37 37 H 1.07994 * 119.99813 * 179.97438 * 4 3 2 38 38 H 1.08007 * 119.99908 * 180.22963 * 5 4 3 39 39 H 1.08997 * 117.51467 * 145.04148 * 9 7 6 40 40 H 1.09003 * 117.51404 * 359.97438 * 9 7 6 41 41 H 0.97000 * 119.99917 * 359.97438 * 14 12 10 42 42 H 1.09002 * 109.47335 * 59.99421 * 15 14 12 43 43 H 1.09000 * 109.46907 * 299.99732 * 15 14 12 44 44 H 1.09003 * 110.03116 * 238.57051 * 18 16 15 45 45 H 1.08998 * 110.03180 * 359.94853 * 18 16 15 46 46 H 1.08993 * 110.48412 * 264.93389 * 19 18 16 47 47 H 1.08998 * 110.48640 * 142.28715 * 19 18 16 48 48 H 0.97000 * 120.00410 * 88.33100 * 22 20 19 49 49 H 0.97009 * 119.99492 * 179.97438 * 26 25 23 50 50 H 1.09000 * 110.48712 * 98.42932 * 31 16 15 51 51 H 1.08995 * 110.60240 * 335.83874 * 31 16 15 52 52 H 1.07998 * 120.00004 * 359.97398 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0051 6 6 3.5806 -1.1969 -0.0003 7 6 4.3341 -2.5020 -0.0002 8 1 3.8020 -3.3523 0.4264 9 6 5.8502 -2.4426 0.2026 10 6 5.2746 -2.7747 -1.1757 11 1 5.3481 -2.0104 -1.9493 12 6 5.3945 -4.1983 -1.6551 13 8 4.7570 -5.0764 -1.1132 14 7 6.2101 -4.4959 -2.6861 15 6 6.3262 -5.8798 -3.1525 16 6 7.3080 -5.9424 -4.3242 17 1 7.0139 -5.2319 -5.0968 18 6 8.7330 -5.6293 -3.8352 19 6 9.5869 -6.8781 -4.1371 20 6 8.8311 -7.5855 -5.2892 21 1 9.0549 -7.1162 -6.2472 22 7 9.1568 -9.0134 -5.3240 23 6 10.1934 -9.4605 -6.0992 24 1 10.7705 -8.7605 -6.6852 25 6 10.4984 -10.8142 -6.1366 26 7 11.4913 -11.2445 -6.8859 27 14 9.4998 -12.0249 -5.1236 28 1 8.3519 -12.5151 -5.9283 29 1 10.3587 -13.1727 -4.7360 30 1 8.9949 -11.3496 -3.9013 31 6 7.3458 -7.3705 -4.9063 32 6 2.1980 -1.1969 -0.0005 33 1 -0.3634 -0.0004 1.0276 34 1 -0.3634 0.8901 -0.5136 35 1 -0.3634 -0.8898 -0.5142 36 1 1.6582 2.1328 -0.0004 37 1 4.1203 2.1327 0.0001 38 1 5.3517 0.0001 0.0092 39 1 6.3155 -3.2538 0.7624 40 1 6.3024 -1.4597 0.3354 41 1 6.7196 -3.7936 -3.1197 42 1 5.3491 -6.2366 -3.4782 43 1 6.6899 -6.5079 -2.3394 44 1 9.1304 -4.7669 -4.3704 45 1 8.7249 -5.4318 -2.7633 46 1 9.6396 -7.5250 -3.2615 47 1 10.5871 -6.5876 -4.4588 48 1 8.6383 -9.6422 -4.7980 49 1 11.7046 -12.1905 -6.9118 50 1 6.7104 -7.4395 -5.7893 51 1 7.0359 -8.0985 -4.1566 52 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086826156.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:51 Heat of formation + Delta-G solvation = 4.610193 kcal Electronic energy + Delta-G solvation = -28113.460636 eV Core-core repulsion = 24270.695732 eV Total energy + Delta-G solvation = -3842.764904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.63025 -39.63715 -38.36974 -36.82295 -35.01886 -33.43680 -32.92824 -31.31855 -31.02740 -29.27273 -27.72272 -27.30438 -25.47891 -24.04879 -23.36143 -22.69765 -22.44339 -20.69220 -20.09923 -19.77279 -19.36032 -17.83947 -17.53158 -17.04203 -16.27353 -15.85743 -15.65286 -15.35889 -14.99865 -14.85626 -14.42742 -14.30330 -14.16432 -13.99702 -13.54888 -13.17342 -13.03863 -12.86190 -12.74598 -12.69118 -12.58133 -12.45478 -12.28097 -12.19789 -11.70102 -11.36529 -11.34673 -11.10181 -10.95906 -10.85017 -10.83851 -10.65367 -10.60153 -10.40185 -10.25791 -10.06441 -9.87468 -9.58468 -9.20292 -9.14177 -8.90932 -8.90007 -7.25821 -5.77433 -3.12705 0.87944 0.99050 2.28828 2.90500 3.23720 3.38208 3.41544 3.45993 3.66028 4.09549 4.30948 4.42150 4.46278 4.52976 4.59216 4.64941 4.70502 4.74018 4.79439 4.83992 4.92659 4.93645 5.03675 5.17713 5.23840 5.30630 5.40766 5.41373 5.47146 5.51334 5.60110 5.61379 5.63146 5.69158 5.70373 5.75206 5.80274 5.93034 5.97554 6.07369 6.09508 6.18809 6.21725 6.24023 6.26756 6.32316 6.41933 6.60135 6.60761 6.78785 6.97577 7.32556 7.99511 8.04467 8.42245 9.20803 9.93637 10.13376 11.40907 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.028306 B = 0.001551 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.944486 B =18050.878269 C =18402.507634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.048 4.048 7 C -0.084 4.084 8 H 0.127 0.873 9 C -0.144 4.144 10 C -0.177 4.177 11 H 0.125 0.875 12 C 0.540 3.460 13 O -0.541 6.541 14 N -0.722 5.722 15 C 0.126 3.874 16 C -0.100 4.100 17 H 0.076 0.924 18 C -0.120 4.120 19 C -0.144 4.144 20 C 0.182 3.818 21 H 0.065 0.935 22 N -0.745 5.745 23 C -0.244 4.244 24 H 0.090 0.910 25 C 0.004 3.996 26 N -0.934 5.934 27 Si 0.884 3.116 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 C -0.127 4.127 32 C -0.110 4.110 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.402 0.598 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.361 0.639 49 H 0.259 0.741 50 H 0.067 0.933 51 H 0.066 0.934 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.640 28.250 15.079 37.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.131 4.131 5 C -0.144 4.144 6 C -0.048 4.048 7 C -0.102 4.102 8 H 0.145 0.855 9 C -0.181 4.181 10 C -0.198 4.198 11 H 0.143 0.857 12 C 0.326 3.674 13 O -0.419 6.419 14 N -0.372 5.372 15 C 0.003 3.997 16 C -0.120 4.120 17 H 0.094 0.906 18 C -0.159 4.159 19 C -0.184 4.184 20 C 0.072 3.928 21 H 0.083 0.917 22 N -0.386 5.386 23 C -0.374 4.374 24 H 0.108 0.892 25 C -0.191 4.191 26 N -0.582 5.582 27 Si 0.714 3.286 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.203 1.203 31 C -0.166 4.166 32 C -0.128 4.128 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.236 0.764 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.194 0.806 49 H 0.069 0.931 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.894 27.540 15.271 36.724 hybrid contribution -0.251 -0.605 0.397 0.766 sum -19.145 26.934 15.667 36.571 Atomic orbital electron populations 1.20810 0.91096 1.02917 1.02431 1.19926 0.96165 0.93035 0.99269 1.21056 0.94334 0.97511 1.01438 1.21108 0.94293 0.97905 0.99825 1.21056 1.00034 0.91907 1.01388 1.19100 0.93306 0.92874 0.99512 1.21086 0.91918 0.96898 1.00335 0.85518 1.23158 0.95464 1.03779 0.95702 1.22349 1.07801 0.95924 0.93765 0.85720 1.19595 0.78983 0.89140 0.79668 1.90712 1.45284 1.49042 1.56837 1.45975 1.45809 1.10886 1.34570 1.21576 0.99642 0.81819 0.96669 1.21952 0.95035 0.98834 0.96150 0.90593 1.22213 0.94389 0.98996 1.00252 1.23035 0.98997 0.95651 1.00734 1.21142 0.90323 0.85321 0.96035 0.91707 1.42748 1.38498 1.02300 1.55043 1.19103 1.06473 0.92718 1.19141 0.89205 1.24674 0.98225 0.96671 0.99556 1.69708 1.31025 1.14418 1.43040 0.86559 0.79927 0.81655 0.80455 1.21075 1.21751 1.20297 1.22646 0.99223 0.94346 1.00353 1.20898 0.93346 0.97844 1.00696 0.91082 0.91506 0.91387 0.86151 0.85969 0.85852 0.87601 0.87313 0.76429 0.91536 0.91211 0.92190 0.92301 0.92003 0.92082 0.80585 0.93079 0.91470 0.91508 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.01 36.00 0.36 -0.23 16 2 C -0.08 -0.60 5.88 -104.62 -0.62 -1.22 16 3 C -0.13 -0.84 9.70 -39.58 -0.38 -1.22 16 4 C -0.11 -0.74 10.05 -39.58 -0.40 -1.13 16 5 C -0.13 -0.88 9.30 -39.58 -0.37 -1.25 16 6 C -0.05 -0.39 5.61 -104.63 -0.59 -0.97 16 7 C -0.08 -0.70 5.56 -91.74 -0.51 -1.21 16 8 H 0.13 1.25 7.67 -51.93 -0.40 0.85 16 9 C -0.14 -1.00 9.57 -26.69 -0.26 -1.26 16 10 C -0.18 -1.44 5.82 -91.77 -0.53 -1.97 16 11 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 12 C 0.54 6.08 7.61 -10.98 -0.08 6.00 16 13 O -0.54 -8.30 16.26 5.55 0.09 -8.20 16 14 N -0.72 -7.04 5.34 -60.30 -0.32 -7.36 16 15 C 0.13 1.46 4.69 -4.05 -0.02 1.44 16 16 C -0.10 -1.16 2.96 -89.51 -0.27 -1.42 16 17 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.12 -1.46 6.19 -25.61 -0.16 -1.61 16 19 C -0.14 -2.36 6.51 -25.07 -0.16 -2.52 16 20 C 0.18 3.36 3.56 -65.93 -0.24 3.12 16 21 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 22 N -0.74 -17.42 5.03 -51.50 -0.26 -17.68 16 23 C -0.24 -6.85 10.44 -15.06 -0.16 -7.01 16 24 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 25 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 26 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 27 Si 0.88 22.22 27.73 -169.99 -4.71 17.50 16 28 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 31 C -0.13 -1.86 5.98 -25.07 -0.15 -2.01 16 32 C -0.11 -0.89 9.39 -39.59 -0.37 -1.26 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 36 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 38 H 0.12 0.65 6.02 -52.48 -0.32 0.33 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.11 0.54 6.17 -51.93 -0.32 0.22 16 41 H 0.40 2.89 8.35 -40.82 -0.34 2.55 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.68 7.61 -51.93 -0.40 0.28 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.36 8.37 5.63 -40.82 -0.23 8.14 16 49 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 50 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 52 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 418.81 15.07 6.31 6.31 Total: -1.00 -33.81 418.81 -11.86 -45.66 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.75 Total: 8.04 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -4.99 Total: -15.71 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.19 Total: -53.60 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.81 -11.86 -45.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086826156.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.273 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds