Wall clock time and date at job start Wed Apr 1 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.90340 * 2 1 4 4 C 1.53877 * 113.68541 * 131.41850 * 2 1 3 5 5 H 1.09005 * 113.63655 * 25.93101 * 4 2 1 6 6 N 1.46498 * 113.63726 * 255.04426 * 4 2 1 7 7 C 1.34783 * 119.99971 * 154.99848 * 6 4 2 8 8 O 1.21280 * 119.99588 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00039 * 179.72639 * 7 6 4 10 10 C 1.50290 * 109.46325 * 300.30333 * 9 7 6 11 11 C 1.32275 * 121.58868 * 303.35938 * 10 9 7 12 12 C 1.45201 * 123.04378 * 0.95013 * 11 10 9 13 13 C 1.32938 * 125.19731 * 319.60484 * 12 11 10 14 14 C 1.45200 * 125.19965 * 359.97287 * 13 12 11 15 15 C 1.32292 * 123.02308 * 40.43467 * 14 13 12 16 16 C 1.54140 * 86.93517 * 140.53379 * 4 2 1 17 17 H 1.09007 * 114.24715 * 218.80802 * 16 4 2 18 18 C 1.53060 * 111.69249 * 88.02407 * 16 4 2 19 19 C 1.53023 * 109.41486 * 213.59568 * 18 16 4 20 20 C 1.52939 * 108.92644 * 64.64280 * 19 18 16 21 21 N 1.45887 * 109.89314 * 302.65666 * 20 19 18 22 22 C 1.36945 * 118.48175 * 219.35921 * 21 20 19 23 23 H 1.08001 * 119.99675 * 153.03174 * 22 21 20 24 24 C 1.38808 * 120.00092 * 333.03425 * 22 21 20 25 25 N 1.31614 * 120.00173 * 344.61556 * 24 22 21 26 26 Si 1.86806 * 119.99750 * 164.61960 * 24 22 21 27 27 H 1.48503 * 109.47358 * 89.99704 * 26 24 22 28 28 H 1.48502 * 109.47073 * 210.00084 * 26 24 22 29 29 H 1.48500 * 109.46901 * 329.99777 * 26 24 22 30 30 C 1.45089 * 123.03455 * 39.34332 * 21 20 19 31 31 H 1.09000 * 111.58093 * 203.57271 * 30 21 20 32 32 H 1.09005 * 109.46984 * 308.08419 * 1 2 3 33 33 H 1.08998 * 109.46930 * 68.08154 * 1 2 3 34 34 H 1.09002 * 109.47191 * 188.08928 * 1 2 3 35 35 H 1.09004 * 109.46860 * 203.46312 * 3 2 1 36 36 H 1.08998 * 109.46820 * 323.46375 * 3 2 1 37 37 H 1.08994 * 109.47185 * 83.47033 * 3 2 1 38 38 H 0.97000 * 120.00207 * 335.00143 * 6 4 2 39 39 H 1.08992 * 109.46816 * 60.28800 * 9 7 6 40 40 H 1.08003 * 119.20096 * 123.32452 * 10 9 7 41 41 H 1.07998 * 118.46488 * 180.93964 * 11 10 9 42 42 H 1.08002 * 117.40041 * 139.58243 * 12 11 10 43 43 H 1.08003 * 117.40270 * 179.97438 * 13 12 11 44 44 H 1.08002 * 118.48896 * 220.41384 * 14 13 12 45 45 H 1.08003 * 119.20626 * 179.00128 * 15 14 13 46 46 H 1.09003 * 109.47964 * 333.58020 * 18 16 4 47 47 H 1.09004 * 109.47830 * 93.61436 * 18 16 4 48 48 H 1.09000 * 109.56304 * 184.48186 * 19 18 16 49 49 H 1.09002 * 109.55753 * 304.81697 * 19 18 16 50 50 H 1.09001 * 109.40194 * 62.78906 * 20 19 18 51 51 H 1.09005 * 109.40217 * 182.61195 * 20 19 18 52 52 H 0.97002 * 119.99932 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1482 -0.9322 1.0567 5 1 1.5013 -1.7631 1.3385 6 7 2.7013 -0.2237 2.2135 7 6 2.8084 -0.8525 3.4009 8 8 2.4472 -2.0050 3.5114 9 6 3.3831 -0.1256 4.5893 10 6 4.7859 0.3141 4.2770 11 6 5.7167 -0.5500 3.9073 12 6 5.4618 -1.9712 3.7544 13 6 4.7103 -2.7068 4.5677 14 6 4.0193 -2.2118 5.7450 15 6 3.3984 -1.0442 5.7788 16 6 3.2032 -1.3002 -0.0051 17 1 3.4870 -2.3527 -0.0082 18 6 4.3963 -0.3419 0.0271 19 6 4.9393 -0.1579 -1.3917 20 6 3.8726 0.5289 -2.2459 21 7 2.6453 -0.2599 -2.2363 22 6 1.9317 -0.3716 -3.3997 23 1 1.3101 -1.2381 -3.5708 24 6 2.0073 0.6288 -4.3591 25 7 2.5055 1.8057 -4.0448 26 14 1.4018 0.3045 -6.0963 27 1 -0.0361 0.6625 -6.1943 28 1 2.1832 1.1270 -7.0545 29 1 1.5769 -1.1339 -6.4210 30 6 2.1462 -0.9317 -1.0511 31 1 1.4959 -1.7679 -1.3082 32 1 -0.3633 0.6339 0.8089 33 1 -0.3633 0.3836 -0.9534 34 1 -0.3634 -1.0174 0.1446 35 1 3.1353 1.3771 -0.4092 36 1 1.5062 2.0654 -0.6118 37 1 2.1592 1.7895 1.0209 38 1 2.9905 0.6979 2.1250 39 1 2.7700 0.7475 4.8124 40 1 5.0398 1.3609 4.3559 41 1 6.7123 -0.1809 3.7100 42 1 5.9189 -2.4704 2.9128 43 1 4.6053 -3.7560 4.3342 44 1 4.0117 -2.8253 6.6338 45 1 2.8898 -0.7438 6.6830 46 1 4.0773 0.6226 0.4222 47 1 5.1778 -0.7556 0.6645 48 1 5.8366 0.4602 -1.3618 49 1 5.1786 -1.1312 -1.8199 50 1 3.6687 1.5207 -1.8423 51 1 4.2336 0.6221 -3.2702 52 1 2.5580 2.5049 -4.7151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087287223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:35 Heat of formation + Delta-G solvation = 79.872100 kcal Electronic energy + Delta-G solvation = -32413.799425 eV Core-core repulsion = 28574.298121 eV Total energy + Delta-G solvation = -3839.501303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.02671 -39.79568 -37.00824 -35.12891 -33.36493 -32.80330 -32.32596 -31.99925 -30.19897 -29.92623 -26.91002 -26.67474 -25.43860 -24.33859 -23.61158 -22.42334 -21.58959 -20.20586 -19.46253 -18.65972 -17.61702 -17.36497 -17.23342 -16.88416 -16.33377 -15.49845 -14.90814 -14.81949 -14.60151 -14.33680 -14.05424 -13.91782 -13.35665 -13.26026 -13.17071 -12.60287 -12.55171 -12.46127 -12.29355 -12.22506 -12.03625 -11.84883 -11.55061 -11.39711 -11.09771 -11.01400 -10.96044 -10.80914 -10.68200 -10.37279 -10.25591 -10.22559 -9.96789 -9.90709 -9.63313 -9.53770 -9.35700 -9.27400 -9.08863 -8.47278 -8.33833 -8.17877 -6.61575 -5.77044 -3.20449 1.22034 1.96439 2.83314 3.19984 3.37008 3.44567 3.46691 3.57534 4.50545 4.66394 4.74952 4.86174 5.02621 5.04889 5.07260 5.15751 5.18517 5.33858 5.37468 5.38926 5.51253 5.56616 5.66055 5.73951 5.85903 5.90243 5.91618 5.98845 6.08722 6.16593 6.21633 6.27184 6.32768 6.39162 6.45734 6.47397 6.51495 6.59582 6.60619 6.69897 6.74502 6.74940 6.78069 6.81980 6.83083 6.87900 7.03929 7.11888 7.24508 7.43611 7.74311 7.84457 7.86032 8.47463 8.52913 9.26800 9.92224 10.35961 11.29044 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022235 B = 0.003332 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.974882 B = 8402.115085 C = 8771.359273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C -0.137 4.137 4 C 0.128 3.872 5 H 0.104 0.896 6 N -0.705 5.705 7 C 0.521 3.479 8 O -0.537 6.537 9 C -0.050 4.050 10 C -0.149 4.149 11 C -0.102 4.102 12 C -0.143 4.143 13 C -0.076 4.076 14 C -0.103 4.103 15 C -0.127 4.127 16 C -0.128 4.128 17 H 0.068 0.932 18 C -0.097 4.097 19 C -0.146 4.146 20 C 0.179 3.821 21 N -0.568 5.568 22 C -0.259 4.259 23 H 0.064 0.936 24 C 0.008 3.992 25 N -0.902 5.902 26 Si 0.898 3.102 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.280 1.280 30 C 0.187 3.813 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.398 0.602 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.072 0.928 47 H 0.043 0.957 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.038 0.962 51 H 0.067 0.933 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 -1.736 17.684 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.116 4.116 3 C -0.193 4.193 4 C 0.023 3.977 5 H 0.122 0.878 6 N -0.356 5.356 7 C 0.307 3.693 8 O -0.414 6.414 9 C -0.071 4.071 10 C -0.168 4.168 11 C -0.120 4.120 12 C -0.161 4.161 13 C -0.094 4.094 14 C -0.121 4.121 15 C -0.146 4.146 16 C -0.150 4.150 17 H 0.086 0.914 18 C -0.135 4.135 19 C -0.184 4.184 20 C 0.054 3.946 21 N -0.286 5.286 22 C -0.389 4.389 23 H 0.082 0.918 24 C -0.191 4.191 25 N -0.546 5.546 26 Si 0.728 3.272 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.206 1.206 30 C 0.076 3.924 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.235 0.765 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.056 0.944 51 H 0.086 0.914 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.770 -2.411 17.612 18.405 hybrid contribution -0.274 0.370 -0.944 1.051 sum 4.496 -2.041 16.667 17.383 Atomic orbital electron populations 1.21612 0.95064 1.00271 1.01309 1.22980 0.95022 0.96506 0.97078 1.22003 1.04167 0.94658 0.98519 1.22751 0.95988 0.96061 0.82887 0.87770 1.46015 1.63755 1.16480 1.09345 1.20337 0.77947 0.87070 0.83968 1.90661 1.49345 1.17018 1.84343 1.19237 0.95797 0.98891 0.93202 1.22882 0.93315 0.99416 1.01150 1.21102 0.99099 0.93169 0.98669 1.20994 1.01811 0.93891 0.99368 1.20990 0.94590 0.99904 0.93871 1.20987 0.97930 0.95994 0.97155 1.22672 1.00199 0.93928 0.97778 1.23206 0.95920 0.98848 0.97000 0.91402 1.21414 0.95832 0.99094 0.97114 1.22090 0.99210 1.00942 0.96204 1.20625 0.83447 0.92232 0.98272 1.43193 1.22619 1.57591 1.05148 1.19221 1.24132 1.01688 0.93886 0.91802 1.24969 1.00288 0.94705 0.99112 1.70047 1.49692 1.02115 1.32737 0.86366 0.78218 0.77581 0.84993 1.21513 1.21686 1.20588 1.21067 0.92460 0.93576 0.85299 0.90883 0.94267 0.91861 0.93622 0.88679 0.92034 0.95349 0.76492 0.87922 0.86113 0.86510 0.87119 0.87141 0.86792 0.86533 0.91014 0.93865 0.93140 0.92924 0.94442 0.91450 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.10 37.16 0.34 -1.80 16 2 C -0.11 -1.95 1.35 -153.85 -0.21 -2.16 16 3 C -0.14 -2.41 7.02 37.16 0.26 -2.15 16 4 C 0.13 2.06 3.63 -66.89 -0.24 1.82 16 5 H 0.10 1.81 7.34 -51.93 -0.38 1.43 16 6 N -0.71 -9.79 4.24 -52.79 -0.22 -10.02 16 7 C 0.52 7.35 5.49 -10.98 -0.06 7.29 16 8 O -0.54 -9.23 13.27 5.56 0.07 -9.15 16 9 C -0.05 -0.54 2.89 -94.47 -0.27 -0.82 16 10 C -0.15 -1.47 8.89 -36.43 -0.32 -1.79 16 11 C -0.10 -1.09 9.58 -38.75 -0.37 -1.46 16 12 C -0.14 -1.72 8.53 -38.65 -0.33 -2.05 16 13 C -0.08 -0.93 7.35 -38.65 -0.28 -1.22 16 14 C -0.10 -1.16 9.09 -38.75 -0.35 -1.51 16 15 C -0.13 -1.37 8.78 -36.43 -0.32 -1.69 16 16 C -0.13 -2.22 4.29 -89.88 -0.39 -2.61 16 17 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 18 C -0.10 -1.58 4.66 -26.69 -0.12 -1.70 16 19 C -0.15 -2.66 6.04 -26.75 -0.16 -2.82 16 20 C 0.18 4.00 4.00 -4.40 -0.02 3.98 16 21 N -0.57 -13.17 2.67 -166.87 -0.45 -13.62 16 22 C -0.26 -6.78 9.45 -15.06 -0.14 -6.93 16 23 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 24 C 0.01 0.21 4.87 -17.43 -0.08 0.13 16 25 N -0.90 -24.75 11.04 55.49 0.61 -24.13 16 26 Si 0.90 21.25 29.58 -169.99 -5.03 16.22 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 30 C 0.19 3.72 3.54 -68.39 -0.24 3.48 16 31 H 0.07 1.50 7.92 -51.93 -0.41 1.09 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.04 0.73 8.02 -51.93 -0.42 0.31 16 35 H 0.10 1.77 1.94 -51.93 -0.10 1.67 16 36 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 37 H 0.03 0.41 6.33 -51.93 -0.33 0.08 16 38 H 0.40 5.06 5.46 -40.82 -0.22 4.84 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 44 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 46 H 0.07 1.13 3.70 -51.93 -0.19 0.94 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 50 H 0.04 0.89 5.62 -51.93 -0.29 0.60 16 51 H 0.07 1.72 6.56 -51.93 -0.34 1.38 16 52 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -28.94 383.05 -10.71 -39.65 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -8.15 Total: 9.29 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.32 Total: -14.01 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.06 Total: -47.77 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.94 -10.71 -39.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087287223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.524 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds