Wall clock time and date at job start Wed Apr 1 2020 02:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 113.19761 * 2 1 4 4 C 1.55779 * 114.08590 * 227.08542 * 2 1 3 5 5 H 1.09003 * 114.12629 * 95.46707 * 4 2 1 6 6 N 1.46500 * 114.12616 * 323.09411 * 4 2 1 7 7 C 1.34780 * 119.99948 * 154.99361 * 6 4 2 8 8 O 1.21284 * 119.99700 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99641 * 180.02562 * 7 6 4 10 10 C 1.50289 * 109.47074 * 300.01067 * 9 7 6 11 11 C 1.32263 * 121.59566 * 303.37827 * 10 9 7 12 12 C 1.45208 * 123.03785 * 0.92672 * 11 10 9 13 13 C 1.32942 * 125.20094 * 319.61762 * 12 11 10 14 14 C 1.45196 * 125.19609 * 359.97438 * 13 12 11 15 15 C 1.32294 * 123.02687 * 40.43194 * 14 13 12 16 16 C 1.49307 * 83.36283 * 208.43406 * 4 2 1 17 17 H 1.09001 * 112.95664 * 284.46073 * 16 4 2 18 18 C 1.51201 * 125.56038 * 142.28296 * 16 4 2 19 19 C 1.54091 * 106.19728 * 198.49960 * 18 16 4 20 20 C 1.52068 * 112.72231 * 55.28679 * 19 18 16 21 21 N 1.48403 * 112.11413 * 313.47286 * 20 19 18 22 22 C 1.36929 * 123.17113 * 231.80536 * 21 20 19 23 23 H 1.08004 * 120.00319 * 214.33411 * 22 21 20 24 24 C 1.38806 * 119.99914 * 34.06243 * 22 21 20 25 25 N 1.31627 * 120.00159 * 17.04674 * 24 22 21 26 26 Si 1.86804 * 120.00316 * 197.04722 * 24 22 21 27 27 H 1.48495 * 109.47053 * 60.00019 * 26 24 22 28 28 H 1.48507 * 109.47194 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46936 * 299.99910 * 26 24 22 30 30 C 1.45380 * 113.66309 * 51.54118 * 21 20 19 31 31 H 1.09000 * 112.09522 * 60.01219 * 30 21 20 32 32 H 1.09007 * 109.46883 * 287.32759 * 1 2 3 33 33 H 1.08998 * 109.47308 * 47.32600 * 1 2 3 34 34 H 1.09002 * 109.47169 * 167.33045 * 1 2 3 35 35 H 1.09004 * 109.47515 * 198.60118 * 3 2 1 36 36 H 1.08999 * 109.46965 * 318.59958 * 3 2 1 37 37 H 1.08996 * 109.47702 * 78.60007 * 3 2 1 38 38 H 0.96992 * 120.00027 * 334.99627 * 6 4 2 39 39 H 1.08994 * 109.47106 * 60.00161 * 9 7 6 40 40 H 1.08000 * 119.20665 * 123.31787 * 10 9 7 41 41 H 1.07994 * 118.47497 * 180.93461 * 11 10 9 42 42 H 1.08003 * 117.39686 * 139.59014 * 12 11 10 43 43 H 1.08001 * 117.39836 * 179.97438 * 13 12 11 44 44 H 1.08010 * 118.48492 * 220.41724 * 14 13 12 45 45 H 1.07998 * 119.19896 * 179.00345 * 15 14 13 46 46 H 1.08993 * 110.10424 * 317.67292 * 18 16 4 47 47 H 1.09004 * 110.09927 * 79.32862 * 18 16 4 48 48 H 1.08994 * 108.84273 * 176.26235 * 19 18 16 49 49 H 1.09002 * 108.84324 * 294.72271 * 19 18 16 50 50 H 1.09001 * 108.91984 * 192.75576 * 20 19 18 51 51 H 1.09001 * 108.83554 * 74.13745 * 20 19 18 52 52 H 0.96996 * 120.00085 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1326 1.4063 0.0000 4 6 2.1657 -0.9684 -1.0415 5 1 2.4340 -0.4937 -1.9854 6 7 1.4340 -2.2257 -1.2148 7 6 1.5366 -2.9113 -2.3706 8 8 2.2350 -2.4876 -3.2671 9 6 0.7835 -4.2044 -2.5489 10 6 1.2236 -5.1889 -1.5022 11 6 2.4929 -5.5350 -1.3665 12 6 3.5553 -4.9873 -2.1910 13 6 3.4702 -4.7574 -3.4976 14 6 2.3008 -5.0162 -4.3184 15 6 1.0664 -4.7645 -3.9146 16 6 3.2859 -1.0158 -0.0555 17 1 3.9024 -0.1171 -0.0690 18 6 4.1032 -2.2405 0.2884 19 6 4.7829 -1.9385 1.6380 20 6 3.7895 -1.5521 2.7225 21 7 2.8029 -0.5513 2.2456 22 6 2.5436 0.6192 2.9071 23 1 1.5450 1.0308 2.9053 24 6 3.5628 1.2739 3.5848 25 7 4.8195 0.9779 3.3287 26 14 3.1511 2.5751 4.8603 27 1 2.3341 1.9676 5.9413 28 1 4.4074 3.1198 5.4351 29 1 2.3845 3.6729 4.2178 30 6 2.1420 -0.9280 1.0067 31 1 1.5931 -1.8647 1.1032 32 1 -0.3633 0.3061 0.9811 33 1 -0.3634 0.6966 -0.7555 34 1 -0.3633 -1.0027 -0.2254 35 1 3.1710 1.3567 -0.3278 36 1 1.5672 2.0439 -0.6796 37 1 2.0891 1.8203 1.0073 38 1 0.8758 -2.5647 -0.4977 39 1 -0.2857 -4.0192 -2.4466 40 1 0.4858 -5.6236 -0.8441 41 1 2.7510 -6.2586 -0.6075 42 1 4.4889 -4.7472 -1.7039 43 1 4.3401 -4.3454 -3.9875 44 1 2.4454 -5.4331 -5.3043 45 1 0.2421 -4.9661 -4.5826 46 1 3.4532 -3.1104 0.3827 47 1 4.8566 -2.4159 -0.4796 48 1 5.3329 -2.8224 1.9607 49 1 5.4863 -1.1170 1.5018 50 1 4.3351 -1.1368 3.5698 51 1 3.2586 -2.4466 3.0483 52 1 5.5318 1.4352 3.8025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087287225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:44 Heat of formation + Delta-G solvation = 92.471072 kcal Electronic energy + Delta-G solvation = -32563.255038 eV Core-core repulsion = 28724.300067 eV Total energy + Delta-G solvation = -3838.954971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.19870 -39.77428 -36.95205 -35.16803 -33.40680 -32.85518 -32.28818 -31.93618 -30.21615 -29.23709 -27.00522 -26.49393 -25.66724 -24.42114 -23.57546 -22.30093 -21.36966 -20.41199 -19.09309 -18.60805 -18.01989 -17.49496 -17.20780 -16.57680 -16.34412 -15.29348 -14.81157 -14.59397 -14.32089 -14.08946 -13.91989 -13.75402 -13.66997 -13.52951 -13.03957 -12.64719 -12.53204 -12.48961 -12.35464 -12.17331 -11.97536 -11.90697 -11.46725 -11.18777 -11.13376 -10.95136 -10.92939 -10.82702 -10.62410 -10.37976 -10.26127 -10.19646 -10.09115 -9.86371 -9.68611 -9.46336 -9.23792 -9.19027 -8.77220 -8.48956 -8.37205 -8.15429 -6.46054 -5.77837 -3.22689 1.26257 1.99687 2.85090 3.23493 3.36745 3.43364 3.44766 3.50305 4.48605 4.69142 4.77385 4.87255 4.90857 5.07133 5.08761 5.09788 5.18237 5.33964 5.38205 5.42647 5.51585 5.59976 5.68397 5.90384 5.93503 5.96421 5.98435 6.02905 6.14230 6.17932 6.22241 6.41175 6.42184 6.43197 6.45529 6.50795 6.57588 6.68745 6.71445 6.74643 6.77212 6.79660 6.81476 6.86832 6.87462 7.04643 7.16661 7.22748 7.36776 7.49389 7.65422 7.80279 7.83387 8.48956 8.53865 9.16976 9.82711 10.53547 11.29439 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.003690 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.581053 B = 7586.091648 C = 8216.157765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.137 3.863 5 H 0.091 0.909 6 N -0.697 5.697 7 C 0.525 3.475 8 O -0.532 6.532 9 C -0.047 4.047 10 C -0.152 4.152 11 C -0.100 4.100 12 C -0.140 4.140 13 C -0.078 4.078 14 C -0.101 4.101 15 C -0.129 4.129 16 C -0.165 4.165 17 H 0.105 0.895 18 C -0.081 4.081 19 C -0.124 4.124 20 C 0.165 3.835 21 N -0.569 5.569 22 C -0.242 4.242 23 H 0.062 0.938 24 C 0.010 3.990 25 N -0.891 5.891 26 Si 0.893 3.107 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.145 3.855 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.094 0.906 38 H 0.398 0.602 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.046 0.954 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.067 0.933 50 H 0.085 0.915 51 H -0.006 1.006 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -11.811 -10.829 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.032 3.968 5 H 0.109 0.891 6 N -0.347 5.347 7 C 0.311 3.689 8 O -0.409 6.409 9 C -0.069 4.069 10 C -0.170 4.170 11 C -0.118 4.118 12 C -0.158 4.158 13 C -0.096 4.096 14 C -0.119 4.119 15 C -0.148 4.148 16 C -0.186 4.186 17 H 0.123 0.877 18 C -0.119 4.119 19 C -0.163 4.163 20 C 0.040 3.960 21 N -0.291 5.291 22 C -0.371 4.371 23 H 0.079 0.921 24 C -0.190 4.190 25 N -0.534 5.534 26 Si 0.723 3.277 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.209 1.209 30 C 0.037 3.963 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.112 0.888 38 H 0.233 0.767 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.086 0.914 50 H 0.103 0.897 51 H 0.011 0.989 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.436 -11.383 -11.339 17.308 hybrid contribution -0.237 0.474 1.136 1.253 sum -6.672 -10.909 -10.203 16.360 Atomic orbital electron populations 1.21693 0.95273 1.00535 1.01537 1.21877 0.93993 0.95815 0.94835 1.21691 0.99406 0.92783 1.04061 1.21349 0.93233 0.84301 0.97945 0.89059 1.45597 1.49063 1.23543 1.16531 1.20288 0.81656 0.84883 0.82111 1.90673 1.39735 1.69084 1.41365 1.19209 1.01155 0.92580 0.93913 1.22867 0.96412 1.00440 0.97304 1.21115 0.92983 0.99017 0.98694 1.21026 0.99388 1.01491 0.93900 1.20987 0.97756 0.96677 0.94174 1.20996 0.92695 0.99175 0.99010 1.22658 0.96954 1.01186 0.93985 1.23183 0.97080 1.00009 0.98322 0.87707 1.21018 0.97793 0.96555 0.96535 1.21745 0.99520 0.99609 0.95387 1.20639 0.89944 0.89101 0.96323 1.43735 1.43999 1.18761 1.22559 1.18801 0.92808 0.98775 1.26722 0.92069 1.25073 0.95191 0.97687 1.01038 1.69976 0.97958 1.43749 1.41728 0.86532 0.77055 0.81844 0.82270 1.21166 1.21772 1.20887 1.21743 0.93540 0.94423 0.86560 0.93825 0.92275 0.93265 0.93479 0.92399 0.94619 0.88752 0.76670 0.87874 0.86123 0.86503 0.86975 0.87126 0.86805 0.86523 0.93539 0.94497 0.94437 0.91433 0.89733 0.98855 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.21 37.15 0.34 -1.64 16 2 C -0.06 -1.10 1.39 -161.47 -0.22 -1.33 16 3 C -0.12 -2.30 8.68 37.16 0.32 -1.97 16 4 C 0.14 2.30 3.94 -72.16 -0.28 2.02 16 5 H 0.09 1.67 7.45 -51.93 -0.39 1.28 16 6 N -0.70 -9.88 4.13 -57.99 -0.24 -10.12 16 7 C 0.53 7.52 5.48 -10.99 -0.06 7.46 16 8 O -0.53 -9.36 13.26 5.55 0.07 -9.28 16 9 C -0.05 -0.52 2.89 -94.47 -0.27 -0.79 16 10 C -0.15 -1.56 8.89 -36.43 -0.32 -1.88 16 11 C -0.10 -1.13 9.58 -38.74 -0.37 -1.50 16 12 C -0.14 -1.79 8.53 -38.65 -0.33 -2.12 16 13 C -0.08 -1.00 7.35 -38.65 -0.28 -1.29 16 14 C -0.10 -1.17 9.09 -38.75 -0.35 -1.52 16 15 C -0.13 -1.41 8.78 -36.43 -0.32 -1.73 16 16 C -0.16 -3.12 2.93 -98.49 -0.29 -3.41 16 17 H 0.11 2.32 5.89 -51.93 -0.31 2.01 16 18 C -0.08 -1.50 5.94 -27.07 -0.16 -1.66 16 19 C -0.12 -2.53 5.88 -26.64 -0.16 -2.69 16 20 C 0.16 3.76 5.69 -3.47 -0.02 3.74 16 21 N -0.57 -13.20 2.87 -169.67 -0.49 -13.69 16 22 C -0.24 -6.13 7.32 -15.07 -0.11 -6.24 16 23 H 0.06 1.56 7.64 -52.48 -0.40 1.16 16 24 C 0.01 0.26 5.02 -17.43 -0.09 0.17 16 25 N -0.89 -24.33 11.51 55.49 0.64 -23.69 16 26 Si 0.89 20.89 29.59 -169.99 -5.03 15.86 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 C 0.15 2.81 2.99 -72.13 -0.22 2.60 16 31 H 0.04 0.83 6.49 -51.93 -0.34 0.49 16 32 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 33 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.05 0.61 6.45 -51.93 -0.34 0.28 16 35 H 0.06 1.15 6.07 -51.93 -0.32 0.83 16 36 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.09 2.04 5.63 -51.93 -0.29 1.74 16 38 H 0.40 5.11 6.23 -40.82 -0.25 4.86 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.11 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 46 H 0.05 0.82 7.99 -51.93 -0.41 0.40 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 50 H 0.08 2.18 6.06 -51.93 -0.31 1.86 16 51 H -0.01 -0.14 8.14 -51.93 -0.42 -0.56 16 52 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -28.64 389.80 -10.77 -39.41 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -8.40 Total: 9.44 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -3.20 Total: -13.80 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.09 Total: -47.51 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.64 -10.77 -39.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087287225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.885 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds